Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu019968.1 Olea europaea HOM05D005080 ORTHO05D002680 3.2e-66 255.0 133 100.0
Oeu032023.1 Olea europaea HOM05D005080 ORTHO05D002680 2.7e-57 225.3 133 88.0
MSTRG.3863 Avicennia marina HOM05D005080 ORTHO05D002680 1.0e-43 180.3 123 78.0
QL06p011711 Quercus lobata HOM05D005080 ORTHO05D002680 3.6e-41 171.8 131 72.5
SGA_v2.0_scaffold18G08397 Striga asiatica HOM05D005080 ORTHO05D002680 1.4e-40 169.9 128 71.1
Migut.G00046 Erythranthe guttata HOM05D005080 ORTHO05D002680 3.0e-40 168.7 117 77.8
Hund11962 Selenicereus undatus HOM05D005080 ORTHO05D002680 9.7e-39 163.7 130 66.9
GSVIVG01031233001 Vitis vinifera HOM05D005080 ORTHO05D002680 4.8e-38 161.4 148 63.5
SalBow6G6408 Salvia bowleyana HOM05D005080 ORTHO05D002680 1.4e-37 159.8 159 56.0
AUR62016127 Chenopodium quinoa HOM05D005080 ORTHO05D002680 4.1e-37 158.3 127 69.3
MBI19_g07241_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 4.1e-37 158.3 136 65.4
MBI19_g09323_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 1.2e-36 156.8 137 65.7
Manes.08G111700 Manihot esculenta HOM05D005080 ORTHO05D002680 1.2e-36 156.8 153 57.5
EL10Ac3g05465 Beta vulgaris HOM05D005080 ORTHO05D002680 3.5e-36 155.2 106 76.4
CSS0006739 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 5.9e-36 154.5 144 62.5
CSS0004193 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 7.7e-36 154.1 144 62.5
Duzib177G0226 Durio zibethinus HOM05D005080 ORTHO05D002680 1.0e-35 153.7 140 63.6
CiPaw.07G029300 Carya illinoinensis HOM05D005080 ORTHO05D002680 2.2e-35 152.5 144 61.8
vmacro01559 Vaccinium macrocarpon HOM05D005080 ORTHO05D002680 2.9e-35 152.1 147 59.9
TAR362G1134 Trochodendron aralioides HOM05D005080 ORTHO05D002680 6.5e-35 151.0 129 68.2
Aqoxy2G02773 Aquilegia oxysepala HOM05D005080 ORTHO05D002680 8.5e-35 150.6 116 70.7
Cc02_g34980 Coffea canephora HOM05D005080 ORTHO05D002680 8.5e-35 150.6 149 60.4
Sc25g0003340 Simmondsia chinensis HOM05D005080 ORTHO05D002680 8.5e-35 150.6 139 62.6
TWI56G0821 Tripterygium wilfordii HOM05D005080 ORTHO05D002680 9.4e-34 147.1 141 60.3
Thecc.05G322200 Theobroma cacao HOM05D005080 ORTHO05D002680 1.2e-33 146.7 140 61.4
Dinv24438 Davidia involucrata HOM05D005080 ORTHO05D002680 2.7e-33 145.6 145 60.7
CANSAT80G1801 Cannabis sativa HOM05D005080 ORTHO05D002680 3.6e-33 145.2 142 57.0
QL03p013481 Quercus lobata HOM05D005080 ORTHO05D002680 3.6e-33 145.2 149 57.7
Ciclev10002575m.g Citrus clementina HOM05D005080 ORTHO05D002680 4.7e-33 144.8 146 59.6
Cpa.g.sc48.156 Carica papaya HOM05D005080 ORTHO05D002680 6.1e-33 144.4 130 65.4
COL.COLO4_04158 Corchorus olitorius HOM05D005080 ORTHO05D002680 1.0e-32 143.7 141 61.0
Haze_04068 Corylus avellana HOM05D005080 ORTHO05D002680 1.0e-32 143.7 123 66.7
Glyma.10G147400 Glycine max HOM05D005080 ORTHO05D002680 1.0e-32 143.7 130 62.3
Hma1.2p1_0008F-1.1_g005640 Hydrangea macrophylla HOM05D005080 ORTHO05D002680 1.4e-32 143.3 147 57.8
Medtr1g084000 Medicago truncatula HOM05D005080 ORTHO05D002680 1.4e-32 143.3 132 61.4
Rhsim11G0094800 Rhododendron simsii HOM05D005080 ORTHO05D002680 1.4e-32 143.3 147 58.5
Ca_10168_v3 Cicer arietinum L. HOM05D005080 ORTHO05D002680 1.8e-32 142.9 132 62.1
Aqoxy2G03866 Aquilegia oxysepala HOM05D005080 ORTHO05D002680 2.3e-32 142.5 132 62.1
TPR.G25211 Trifolium pratense HOM05D005080 ORTHO05D002680 2.3e-32 142.5 144 56.2
Dinv30882 Davidia involucrata HOM05D005080 ORTHO05D002680 3.0e-32 142.1 148 60.1
Lalb_Chr02g0147831 Lupinus albus HOM05D005080 ORTHO05D002680 3.0e-32 142.1 130 63.8
Nitab4.5_0000155g0030 Nicotiana tabacum HOM05D005080 ORTHO05D002680 3.0e-32 142.1 149 57.0
ClCG02G014980 Citrullus lanatus HOM05D005080 ORTHO05D002680 4.0e-32 141.7 143 54.5
ECA234G0011 Erigeron canadensis HOM05D005080 ORTHO05D002680 4.0e-32 141.7 109 74.3
QL03p040025 Quercus lobata HOM05D005080 ORTHO05D002680 4.0e-32 141.7 149 57.0
arahy.Tifrunner.gnm1.ann1.6BZ3LL Arachis hypogaea HOM05D005080 ORTHO05D002680 6.8e-32 141.0 132 60.6
HanXRQChr10g0294491 Helianthus annuus HOM05D005080 ORTHO05D002680 6.8e-32 141.0 88 84.1
THA.LOC104816888 Tarenaya hassleriana HOM05D005080 ORTHO05D002680 6.8e-32 141.0 136 61.0
Cfa006699 Carpinus fangiana HOM05D005080 ORTHO05D002680 1.2e-31 140.2 123 65.9
TPR.G34915 Trifolium pratense HOM05D005080 ORTHO05D002680 1.2e-31 140.2 132 60.6
arahy.Tifrunner.gnm1.ann1.DD48CX Arachis hypogaea HOM05D005080 ORTHO05D002680 1.5e-31 139.8 132 60.6
Lsat_1_v5_gn_5_103961 Lactuca sativa HOM05D005080 ORTHO05D002680 2.0e-31 139.4 113 68.1
Actinidia35525 Actinidia chinensis HOM05D005080 ORTHO05D002680 2.6e-31 139.0 141 61.7
MELO3C004191.2 Cucumis melo HOM05D005080 ORTHO05D002680 3.4e-31 138.7 143 54.5
CsaV3_2G007020 Cucumis sativus L. HOM05D005080 ORTHO05D002680 5.7e-31 137.9 143 53.8
Sp2g06450 Schrenkiella parvula HOM05D005080 ORTHO05D002680 5.7e-31 137.9 118 64.4
VMungo0720G3125 Vigna mungo HOM05D005080 ORTHO05D002680 5.7e-31 137.9 136 60.3
CARHR055230 Cardamine hirsuta HOM05D005080 ORTHO05D002680 7.5e-31 137.5 120 67.5
Nitab4.5_0003894g0020 Nicotiana tabacum HOM05D005080 ORTHO05D002680 7.5e-31 137.5 149 55.7
Phvul.007G201000 Phaseolus vulgaris HOM05D005080 ORTHO05D002680 7.5e-31 137.5 136 60.3
Gorai.007G306000 Gossypium raimondii HOM05D005080 ORTHO05D002680 9.7e-31 137.1 143 58.0
CDE05G2119 Ceratophyllum demersum HOM05D005080 ORTHO05D002680 1.3e-30 136.7 147 52.4
Gohir.A11G272900 Gossypium hirsutum HOM05D005080 ORTHO05D002680 1.3e-30 136.7 143 57.3
Peaxi162Scf01208g00140 Petunia axillaris HOM05D005080 ORTHO05D002680 1.7e-30 136.3 148 56.8
Potri.013G009100 Populus trichocarpa HOM05D005080 ORTHO05D002680 1.7e-30 136.3 153 52.9
Gohir.D11G283200 Gossypium hirsutum HOM05D005080 ORTHO05D002680 2.2e-30 136.0 143 57.3
TWI36G1328 Tripterygium wilfordii HOM05D005080 ORTHO05D002680 2.2e-30 136.0 88 78.4
BcaC09g49559 Brassica carinata HOM05D005080 ORTHO05D002680 2.8e-30 135.6 115 64.3
A01p27440 Brassica napus HOM05D005080 ORTHO05D002680 2.8e-30 135.6 115 64.3
C01p35300 Brassica napus HOM05D005080 ORTHO05D002680 2.8e-30 135.6 115 64.3
BolC1t03487H Brassica oleracea HOM05D005080 ORTHO05D002680 2.8e-30 135.6 115 64.3
BraA01t02883Z Brassica rapa HOM05D005080 ORTHO05D002680 2.8e-30 135.6 115 64.3
Duzib106G0715 Durio zibethinus HOM05D005080 ORTHO05D002680 2.8e-30 135.6 134 59.0
Lj5g0010805 Lotus japonicus HOM05D005080 ORTHO05D002680 2.8e-30 135.6 134 59.0
FvH4_6g07400 Fragaria vesca HOM05D005080 ORTHO05D002680 3.7e-30 135.2 76 85.5
FAN14G1760 Fragaria x ananassa HOM05D005080 ORTHO05D002680 3.7e-30 135.2 76 85.5
RcHm_v2.0_Chr3g0457001 Rosa chinensis HOM05D005080 ORTHO05D002680 3.7e-30 135.2 76 85.5
BcaB04g20161 Brassica carinata HOM05D005080 ORTHO05D002680 4.8e-30 134.8 111 69.4
FAN02G4361 Fragaria x ananassa HOM05D005080 ORTHO05D002680 4.8e-30 134.8 80 81.2
Gohir.A11G273000 Gossypium hirsutum HOM05D005080 ORTHO05D002680 4.8e-30 134.8 143 57.3
MD04G1193400 Malus domestica HOM05D005080 ORTHO05D002680 4.8e-30 134.8 76 88.2
Psat6g152200 Pisum sativum HOM05D005080 ORTHO05D002680 4.8e-30 134.8 142 57.0
AT1G56420 Arabidopsis thaliana HOM05D005080 ORTHO05D002680 6.3e-30 134.4 117 64.1
Glyma.20G098100 Glycine max HOM05D005080 ORTHO05D002680 6.3e-30 134.4 144 54.9
Gorai.007G305900 Gossypium raimondii HOM05D005080 ORTHO05D002680 6.3e-30 134.4 143 57.3
PGSC0003DMG400012652 Solanum tuberosum HOM05D005080 ORTHO05D002680 6.3e-30 134.4 146 56.8
CAN.G625.12 Capsicum annuum HOM05D005080 ORTHO05D002680 8.3e-30 134.0 118 63.6
Eucgr.H03287 Eucalyptus grandis HOM05D005080 ORTHO05D002680 1.1e-29 133.7 115 67.8
FAN05G0620 Fragaria x ananassa HOM05D005080 ORTHO05D002680 1.1e-29 133.7 80 81.2
Carub.0002s0773 Capsella rubella HOM05D005080 ORTHO05D002680 1.8e-29 132.9 122 63.1
Gohir.D11G283100 Gossypium hirsutum HOM05D005080 ORTHO05D002680 1.8e-29 132.9 143 56.6
CDE11G1091 Ceratophyllum demersum HOM05D005080 ORTHO05D002680 2.4e-29 132.5 135 57.0
unitig_0.g2584 Utricularia gibba HOM05D005080 ORTHO05D002680 2.4e-29 132.5 88 78.4
AL1G66100 Arabidopsis lyrata HOM05D005080 ORTHO05D002680 3.1e-29 132.1 119 64.7
FAN09G1903 Fragaria x ananassa HOM05D005080 ORTHO05D002680 3.1e-29 132.1 83 79.5
Aa31LG1G5960 Aethionema arabicum HOM05D005080 ORTHO05D002680 4.1e-29 131.7 130 60.8
PSO170G3135 Papaver somniferum HOM05D005080 ORTHO05D002680 4.1e-29 131.7 89 76.4
Duzib128G1506 Durio zibethinus HOM05D005080 ORTHO05D002680 5.3e-29 131.3 117 64.1
Thhalv10023712m.g Eutrema salsugineum HOM05D005080 ORTHO05D002680 7.0e-29 131.0 119 63.9
Lalb_Chr06g0167471 Lupinus albus HOM05D005080 ORTHO05D002680 9.1e-29 130.6 141 56.7
Prupe.6G313500 Prunus persica HOM05D005080 ORTHO05D002680 1.2e-28 130.2 149 55.0
Solyc02g085920.3 Solanum lycopersicum HOM05D005080 ORTHO05D002680 3.5e-28 128.6 105 70.5
SalBow8G3275 Salvia bowleyana HOM05D005080 ORTHO05D002680 4.5e-28 128.3 112 63.4
Sed0010078 Sechium edule HOM05D005080 ORTHO05D002680 5.9e-28 127.9 107 65.4
PSO357G0168 Papaver somniferum HOM05D005080 ORTHO05D002680 7.7e-28 127.5 76 80.3
Sabra13G0007700 Salix brachista HOM05D005080 ORTHO05D002680 1.3e-27 126.7 112 61.6
HPP92_019389 Vanilla planifolia HOM05D005080 ORTHO05D002680 1.3e-27 126.7 111 63.1
Zm00001eb137010 Zea mays HOM05D005080 ORTHO05D002680 1.3e-27 126.7 131 58.8
ATR0706G213 Amborella trichopoda HOM05D005080 ORTHO05D002680 4.2e-26 121.7 135 56.3
PGR083G2900 Punica granatum HOM05D005080 ORTHO05D002680 7.2e-26 120.9 129 55.8
DCAR_025280 Daucus carota HOM05D005080 ORTHO05D002680 9.4e-26 120.6 90 73.3
Os12g0560600 Oryza sativa ssp. japonica HOM05D005080 ORTHO05D002680 1.8e-24 116.3 118 55.9
PSO210G1547 Papaver somniferum HOM05D005080 ORTHO05D002680 2.3e-24 115.9 113 62.8
PSO761G0685 Papaver somniferum HOM05D005080 ORTHO05D002680 2.3e-24 115.9 113 62.8
Lju926A9G32 Lonicera japonica HOM05D005080 ORTHO05D002680 1.2e-23 113.6 61 93.4
AUR62041400 Chenopodium quinoa HOM05D005080 ORTHO05D002680 3.4e-23 112.1 102 61.8
QL06p011739 Quercus lobata HOM05D005080 ORTHO05D002680 5.7e-23 111.3 101 62.4
SEGI_39060 Sequoiadendron giganteum HOM05D005080 ORTHO05D002680 7.0e-21 104.4 127 51.2
AagrBONN_evm.TU.Sc2ySwM_368.3291 Anthoceros agrestis HOM05D005080 ORTHO05D002680 7.2e-18 94.4 80 58.8
Ah.04g154650 Amaranthus hybridus HOM05D005080 ORTHO05D002680 1.0e-16 90.5 93 58.1
SMO146G0256 Selaginella moellendorffii HOM05D005080 ORTHO05D002680 1.2e-15 87.0 67 59.7
Pp3c5_5210 Physcomitrium patens HOM05D005080 ORTHO05D002680 4.4e-15 85.1 84 52.4
CSS0044415 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 1.3e-14 83.6 89 57.3
Peaxi162Scf00484g00214 Petunia axillaris HOM05D005080 ORTHO05D002680 2.8e-14 82.4 118 46.6
QL03p014030 Quercus lobata HOM05D005080 ORTHO05D002680 1.1e-13 80.5 118 45.8
Sopen02g030590 Solanum pennellii HOM05D005080 ORTHO05D002680 1.2e-12 77.0 75 62.7
RcHm_v2.0_Chr5g0001621 Rosa chinensis HOM05D005080 ORTHO05D002680 4.5e-12 75.1 85 51.8
Mapoly0002s0008 Marchantia polymorpha HOM05D005080 ORTHO05D002680 4.7e-09 65.1 67 46.3
Atru.chr5.2961 Acer truncatum HOM05D005080 ORTHO05D002680 3.1e-08 62.4 34 88.2
DCAR_000888 Daucus carota HOM05D006448 ORTHO05D002680 3.4e-07 58.9 69 43.5
SalBow8G1371 Salvia bowleyana HOM05D005080 ORTHO05D002680 3.4e-07 58.9 30 96.7
CSS0032564 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 4.4e-07 58.5 30 96.7
TAR365G0655 Trochodendron aralioides HOM05D005080 ORTHO05D002680 4.4e-07 58.5 30 96.7
TWI81G0076 Tripterygium wilfordii HOM05D006448 ORTHO05D002680 5.8e-07 58.2 70 40.0
Ah.04g154660 Amaranthus hybridus HOM05D005080 ORTHO05D002680 9.8e-07 57.4 29 96.6
MSTRG.13803 Avicennia marina HOM05D006448 ORTHO05D002680 9.8e-07 57.4 67 41.8
ATR0661G558 Amborella trichopoda HOM05D006448 ORTHO05D002680 1.3e-06 57.0 98 37.8
Oeu048758.1 Olea europaea HOM05D006448 ORTHO05D002680 1.3e-06 57.0 67 41.8
A09p63810 Brassica napus HOM05D006448 ORTHO05D002680 1.7e-06 56.6 95 36.8
BraA09t41728Z Brassica rapa HOM05D005378 ORTHO05D006986 1.7e-06 56.6 95 36.8
COL.COLO4_23809 Corchorus olitorius HOM05D006448 ORTHO05D002680 2.2e-06 56.2 62 41.9
Actinidia05239 Actinidia chinensis HOM05D006448 ORTHO05D002680 2.9e-06 55.8 122 31.1
C02p30770 Brassica napus HOM05D004697 ORTHO05D006015 2.9e-06 55.8 30 90.0
BolC3t14325H Brassica oleracea HOM05D004697 ORTHO05D002680 2.9e-06 55.8 30 90.0
MBI18_g35139_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 2.9e-06 55.8 33 84.8
Thecc.03G266800 Theobroma cacao HOM05D006448 ORTHO05D002680 2.9e-06 55.8 65 41.5
Cc08_g13670 Coffea canephora HOM05D006448 ORTHO05D002680 6.4e-06 54.7 66 42.4
SGA_v2.0_scaffold144G35983 Striga asiatica HOM05D006448 ORTHO05D002680 6.4e-06 54.7 122 31.1
BcaC05g29157 Brassica carinata HOM05D004697 ORTHO05D002680 8.3e-06 54.3 30 86.7
C05p54140 Brassica napus HOM05D004697 ORTHO05D002680 8.3e-06 54.3 30 86.7
BolC4t24474H Brassica oleracea HOM05D006448 ORTHO05D002680 8.3e-06 54.3 95 36.8
BolC5t34080H Brassica oleracea HOM05D004697 ORTHO05D002680 8.3e-06 54.3 30 86.7
CSS0026776 Camellia sinensis var. sinensis HOM05D006448 ORTHO05D002680 8.3e-06 54.3 132 31.1
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 8.3e-06 54.3 29 89.7


User provided reference genes

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