Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 2716.0 1377 100.0
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1700.6 1402 62.6
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1674.4 1424 61.9
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1661.7 1407 62.9
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1656.3 1368 64.5
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1632.8 1451 59.7
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1615.1 1353 62.1
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1580.8 1407 60.4
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1575.5 1404 59.3
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1570.1 1355 61.0
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1568.5 1382 59.2
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1562.4 1375 59.1
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1560.0 1382 58.9
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1559.3 1394 58.7
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1558.5 1382 58.8
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1557.0 1402 59.4
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1551.6 1382 58.8
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1546.9 1400 59.4
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1546.6 1389 58.6
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1537.3 1341 60.3
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1532.7 1374 60.3
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1527.7 1376 60.3
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1527.7 1418 57.8
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1523.5 1392 58.5
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1517.7 1374 59.8
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1510.4 1381 58.6
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1504.2 1411 58.3
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1496.1 1476 56.7
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1494.9 1324 60.8
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1483.4 1383 56.5
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1482.2 1392 56.0
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1479.2 1387 56.3
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1474.1 1369 57.0
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1473.8 1400 56.8
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1473.0 1366 57.4
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1460.7 1395 57.2
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1448.0 1385 55.9
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1442.9 1446 54.4
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1440.2 1389 56.4
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1437.6 1349 57.2
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1431.4 1359 57.5
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1430.6 1387 54.9
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1418.3 1379 56.1
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1409.8 1373 56.6
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1407.5 1377 55.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1406.3 1384 54.7
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1404.0 1373 54.8
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1401.7 1385 55.2
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1396.3 1378 54.5
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1389.0 1390 54.5
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1385.2 1376 53.8
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1382.1 1383 56.0
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1381.7 1382 53.6
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1381.3 1400 53.8
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1376.7 1435 52.7
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1374.0 1221 59.0
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1370.9 1385 54.3
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1370.5 1410 53.3
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1368.2 1392 54.1
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1363.2 1371 53.9
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1363.2 1367 55.4
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1353.2 1387 53.2
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1341.6 1376 54.1
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1340.1 1343 54.3
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1335.1 1133 62.4
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1324.7 1360 52.9
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1323.1 1359 52.7
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1316.6 1360 52.7
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1315.4 1362 52.7
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1305.8 1360 52.5
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1291.6 1390 51.7
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1284.2 1363 53.0
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1278.8 1376 52.0
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1271.1 1369 51.6
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1241.5 1387 47.8
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1236.5 1563 46.5
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1211.1 1112 58.7
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1164.8 1604 44.6
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1130.5 1372 45.3
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 0.0e+00 1086.6 1355 47.5
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.6e-309 1066.6 1046 56.5
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 3.8e-303 1045.4 1040 53.6
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-296 1023.1 991 55.3
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 5.3e-289 998.4 1014 55.0
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 1.1e-286 990.7 1158 48.2
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.0e-267 926.8 832 59.5
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.4e-249 867.5 829 56.9
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 4.3e-246 855.9 835 54.4
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 7.3e-238 828.6 731 59.1
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 6.4e-234 815.5 752 56.0
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 4.0e-212 743.0 1393 36.8
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 2.3e-191 674.1 1414 34.0
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 8.2e-181 639.0 524 62.6
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 2.4e-164 584.3 1455 30.8
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 1.0e-162 578.9 581 54.2
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 9.4e-161 572.4 455 66.2
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.7e-157 560.5 458 62.9
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.7e-152 544.3 541 54.5
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 3.7e-149 533.9 542 53.7
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.0e-135 489.2 341 70.4
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 8.9e-135 486.1 411 60.8
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.4e-132 478.0 666 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.0e-127 462.6 999 34.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.9e-105 388.7 558 45.0
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 2.1e-99 368.6 850 33.9
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.3e-97 361.3 273 65.6
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.3e-97 360.1 474 42.6
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.9e-85 321.6 472 41.9
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 3.2e-84 318.2 359 49.6
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.2e-76 291.2 440 41.1
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 9.3e-68 263.5 373 43.2
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 6.5e-61 240.7 168 72.6
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-59 236.5 359 42.3
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.6e-59 236.1 404 40.1
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.3e-56 224.2 164 67.7
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 4.1e-55 221.5 253 48.2
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 7.2e-52 210.7 149 71.8
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.6e-51 208.4 138 73.2
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 6.1e-51 207.6 224 52.2
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.8e-50 206.1 242 45.0
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 3.0e-50 205.3 220 49.1
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 8.2e-48 197.2 192 56.2
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.2e-46 193.4 169 59.2
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 7.2e-44 184.1 255 40.4
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 1.8e-39 169.5 174 53.4
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 4.1e-39 168.3 1020 22.2
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 5.3e-39 167.9 141 61.7
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 3.0e-34 152.1 677 24.7
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 2.6e-33 149.1 1175 23.6
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 2.2e-32 146.0 212 42.0
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 6.5e-29 134.4 137 48.9
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 3.2e-28 132.1 412 29.6
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 5.5e-28 131.3 133 50.4
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 3.0e-26 125.6 166 42.8
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.6e-25 122.5 107 54.2
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 5.7e-25 121.3 91 64.8
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.4e-23 114.8 276 37.0
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 2.0e-22 112.8 152 45.4
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 3.5e-22 112.1 100 54.0
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 8.6e-21 107.5 91 61.5
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.1e-20 107.1 152 45.4
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 2.1e-19 102.8 121 48.8
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 6.1e-19 101.3 95 51.6
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.0e-19 100.9 77 59.7
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 6.8e-18 97.8 575 22.3
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 5.7e-17 94.7 87 52.9
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 8.3e-16 90.9 61 67.2
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.1e-15 90.5 142 37.3
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 4.1e-15 88.6 143 41.3
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.0e-15 87.8 121 39.7
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 9.2e-15 87.4 143 41.3
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.6e-14 86.7 94 47.9
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.0e-13 84.0 73 57.5
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 2.3e-13 82.8 63 66.7
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 3.3e-12 79.0 118 42.4
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 7.3e-12 77.8 118 41.5
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 7.3e-12 77.8 73 54.8
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 2.0e-09 69.7 51 60.8
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.4e-09 68.6 140 35.7
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 5.8e-09 68.2 85 44.7
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 3.7e-08 65.5 95 38.9
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 3.7e-08 65.5 95 38.9
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.4e-08 64.7 150 33.3
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 5.4e-07 61.6 61 52.5
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 1.2e-06 60.5 72 50.0
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 2.0e-06 59.7 75 42.7


User provided reference genes

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