Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 4.4e-206 721.1 370 100.0
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 3.2e-132 475.7 414 65.2
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.8e-127 459.9 404 64.4
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 8.8e-122 441.0 405 61.0
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.5e-121 440.3 383 62.9
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 3.3e-121 439.1 404 60.6
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.4e-121 438.7 407 61.7
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 7.4e-121 438.0 408 61.0
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 4.8e-120 435.3 405 60.7
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 4.8e-120 435.3 403 62.0
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 8.2e-120 434.5 407 61.4
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 5.3e-119 431.8 401 60.6
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 7.0e-119 431.4 387 61.8
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 2.0e-118 429.9 402 61.7
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.6e-118 429.5 407 60.2
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 5.9e-118 428.3 402 61.7
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 7.7e-118 427.9 408 59.1
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 7.7e-118 427.9 410 60.0
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.7e-117 426.8 409 60.4
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 3.8e-117 425.6 402 60.2
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 5.0e-117 425.2 395 61.5
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 8.5e-117 424.5 407 59.0
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.5e-116 423.7 408 59.3
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.9e-116 423.3 424 58.5
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.9e-116 423.3 406 59.6
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.5e-116 422.9 401 60.1
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.5e-116 422.9 404 58.4
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 3.2e-116 422.5 407 60.4
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 3.2e-116 422.5 402 60.7
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 7.2e-116 421.4 407 59.7
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 9.4e-116 421.0 405 59.3
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.2e-115 420.6 410 58.3
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.2e-115 420.6 405 59.0
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.6e-115 420.2 407 59.2
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.6e-115 420.2 407 60.0
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.6e-115 419.1 407 58.7
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 8.0e-115 417.9 406 58.9
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.4e-114 417.2 405 57.8
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.4e-114 417.2 407 59.5
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 3.0e-114 416.0 408 58.3
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 3.9e-114 415.6 406 57.6
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 8.8e-114 414.5 405 59.0
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.1e-113 414.1 406 57.6
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.5e-113 413.7 408 58.6
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.5e-113 413.7 411 57.7
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.5e-113 413.7 406 59.1
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 3.3e-113 412.5 407 59.2
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 4.4e-113 412.1 409 58.4
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 4.4e-113 412.1 410 57.8
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 4.4e-113 412.1 335 67.2
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 5.7e-113 411.8 406 57.9
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 5.7e-113 411.8 415 57.6
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 5.7e-113 411.8 401 57.9
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 7.4e-113 411.4 410 59.3
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 7.4e-113 411.4 413 57.4
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.3e-112 410.6 405 58.8
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.7e-112 410.2 406 57.9
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.7e-112 410.2 406 58.6
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 2.8e-112 409.5 418 57.4
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 6.3e-112 408.3 404 56.9
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 8.2e-112 407.9 409 56.7
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 2.4e-111 406.4 405 58.8
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 3.1e-111 406.0 413 54.5
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 5.3e-111 405.2 410 56.3
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.0e-111 404.8 388 59.8
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 7.0e-111 404.8 405 58.8
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 9.1e-111 404.4 407 57.5
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 1.2e-110 404.1 445 55.5
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 2.0e-110 403.3 409 56.0
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.6e-110 402.9 404 55.7
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 3.5e-110 402.5 404 55.7
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 4.5e-110 402.1 391 57.5
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 7.7e-110 401.4 407 57.5
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.0e-109 401.0 409 57.0
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.7e-109 400.2 404 55.9
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.9e-109 399.4 409 57.0
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.9e-109 399.4 418 56.2
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.8e-109 399.1 418 56.2
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.8e-109 399.1 408 57.4
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 8.5e-109 397.9 415 54.2
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.1e-108 397.5 408 57.1
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.9e-108 396.7 405 56.0
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 3.2e-108 396.0 406 57.1
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 3.2e-108 396.0 403 56.6
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.2e-108 395.6 418 54.5
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 5.5e-108 395.2 353 62.9
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 9.4e-108 394.4 408 56.9
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.1e-107 393.3 409 56.0
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.1e-107 393.3 402 57.7
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 2.7e-107 392.9 409 54.3
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.7e-107 392.1 438 53.7
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.7e-107 392.1 438 53.7
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 6.1e-107 391.7 412 56.6
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 8.0e-107 391.3 405 54.6
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.2e-105 387.5 424 55.0
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 7.5e-105 384.8 410 55.6
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 1.3e-104 384.0 408 55.4
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.7e-104 383.6 333 62.2
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.4e-103 380.6 412 54.4
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 4.1e-103 379.0 338 61.5
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 4.1e-103 379.0 338 61.5
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.2e-102 377.5 403 53.6
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 7.7e-102 374.8 389 54.8
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 3.6e-99 365.9 344 59.0
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.4e-97 359.4 312 62.5
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 4.1e-95 352.4 414 48.6
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 7.0e-95 351.7 413 51.3
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 2.7e-94 349.7 329 59.3
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.1e-91 340.1 397 51.1
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 4.7e-91 339.0 405 52.3
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.0e-89 333.6 473 46.1
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.0e-89 333.6 473 46.1
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.4e-89 332.4 408 51.5
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 9.5e-84 314.7 422 44.5
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.6e-83 313.9 299 58.9
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.6e-75 287.3 314 50.0
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 8.1e-75 285.0 269 58.7
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.3e-72 277.7 319 52.4
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.1e-66 256.5 298 51.3
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 3.7e-64 249.6 316 51.6
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.2e-54 218.0 395 35.4
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 2.7e-54 216.9 316 41.5
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 9.9e-49 198.4 424 33.0
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.1e-44 184.9 301 40.2
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.9e-44 184.1 126 73.0
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.6e-43 181.0 243 45.7
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.2e-41 174.9 467 27.8
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.9e-40 170.2 289 39.4
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.9e-36 157.5 290 35.9
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 3.3e-36 156.8 320 33.8
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.3e-36 156.8 405 31.6
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.1e-35 152.1 105 72.4
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.4e-34 150.6 105 71.4
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.1e-31 141.7 107 68.2
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 2.5e-28 130.6 148 48.6
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 7.4e-28 129.0 132 54.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 3.8e-24 116.7 128 51.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.8e-19 99.8 116 53.4
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.2e-17 95.1 58 72.4
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 3.4e-17 93.6 67 70.1
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 3.8e-16 90.1 75 58.7
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 2.1e-14 84.3 114 46.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 8.2e-11 72.4 102 43.1
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 3.1e-10 70.5 49 73.5
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.5e-09 68.2 64 60.9
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 1.1e-07 62.0 92 43.5
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 7.2e-07 59.3 102 39.2
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 9.4e-07 58.9 149 28.2
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 4.7e-06 56.6 48 62.5


User provided reference genes

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