Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 3.0e-188 661.8 350 100.0
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 5.0e-151 538.1 434 70.5
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 2.0e-131 473.0 431 65.0
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 5.4e-129 464.9 426 62.4
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 7.3e-126 454.5 429 60.8
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 2.8e-125 452.6 428 61.7
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 4.0e-124 448.7 428 61.2
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 6.8e-124 448.0 424 61.3
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 8.9e-124 447.6 424 61.1
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.2e-123 447.2 429 60.1
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.0e-123 446.4 430 61.6
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.6e-123 446.0 428 61.0
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 4.4e-123 445.3 428 61.7
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 5.8e-123 444.9 422 61.4
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.3e-122 443.7 423 60.3
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 3.7e-122 442.2 427 60.2
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 3.7e-122 442.2 428 60.7
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 3.7e-122 442.2 422 60.7
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 4.9e-122 441.8 424 61.3
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 4.9e-122 441.8 434 60.6
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 8.3e-122 441.0 416 61.8
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.1e-121 440.7 426 60.1
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.4e-121 440.3 463 57.0
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.4e-121 440.3 463 57.0
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 1.9e-121 439.9 423 60.8
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 4.1e-121 438.7 428 62.1
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 5.4e-121 438.3 420 60.0
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.0e-121 438.0 428 60.0
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 7.0e-121 438.0 399 63.4
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 1.2e-120 437.2 420 61.9
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.2e-120 437.2 431 59.9
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 2.0e-120 436.4 428 59.8
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 3.5e-120 435.6 425 61.2
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 3.5e-120 435.6 420 61.0
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 6.0e-120 434.9 431 60.3
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 7.8e-120 434.5 429 59.9
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.3e-119 433.7 398 63.3
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.0e-119 432.6 423 60.8
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.0e-119 432.6 427 59.7
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.0e-119 432.6 427 59.0
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 5.0e-119 431.8 429 59.7
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 5.0e-119 431.8 427 59.0
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.6e-119 431.0 427 59.7
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.1e-118 430.6 427 60.7
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.1e-118 430.6 429 59.0
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 1.5e-118 430.3 427 58.5
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.5e-118 430.3 428 60.3
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.9e-118 429.9 449 58.1
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 3.3e-118 429.1 424 59.7
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 4.3e-118 428.7 426 59.2
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 5.6e-118 428.3 430 58.8
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 9.5e-118 427.6 397 61.7
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.6e-117 426.8 428 58.4
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 2.8e-117 426.0 422 58.3
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 6.2e-117 424.9 426 59.4
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 6.2e-117 424.9 435 58.6
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 8.0e-117 424.5 428 57.5
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 2.3e-116 422.9 429 58.5
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 3.1e-116 422.5 427 57.6
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.1e-116 422.5 432 58.8
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 8.9e-116 421.0 430 59.1
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 5.8e-115 418.3 430 57.2
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.3e-114 417.2 427 57.4
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 3.7e-114 415.6 425 56.7
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.7e-114 415.6 430 56.3
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 3.7e-114 415.6 426 58.5
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 4.9e-114 415.2 466 55.8
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 6.4e-114 414.8 427 57.4
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 8.3e-114 414.5 426 57.5
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.4e-113 412.9 428 58.4
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 3.2e-113 412.5 431 56.4
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.1e-113 412.1 444 56.8
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 4.1e-113 412.1 426 56.8
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 7.0e-113 411.4 444 56.8
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.6e-112 410.2 428 58.2
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.7e-112 409.5 428 57.0
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.7e-112 409.5 428 57.9
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.7e-112 409.5 428 57.0
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 7.8e-112 407.9 435 54.7
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 7.8e-112 407.9 283 77.4
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 7.8e-112 407.9 428 56.8
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.3e-111 407.1 430 56.3
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.3e-111 407.1 425 57.2
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.3e-111 406.4 424 57.5
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.0e-111 406.0 427 56.2
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.9e-111 405.6 440 54.8
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 5.0e-111 405.2 442 56.6
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.9e-110 403.3 436 55.3
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.9e-110 403.3 425 55.5
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 2.5e-110 402.9 425 55.5
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.5e-110 402.9 425 55.5
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.3e-110 402.5 423 56.5
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.3e-110 402.5 426 56.1
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 4.3e-110 402.1 444 54.7
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 4.3e-110 402.1 431 56.1
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 5.6e-110 401.7 425 55.8
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.4e-108 397.1 405 58.3
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.8e-108 396.7 428 55.1
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 2.3e-108 396.4 432 56.2
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 4.0e-108 395.6 279 75.3
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 2.0e-107 393.3 433 55.2
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 2.0e-107 393.3 424 54.0
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 4.4e-107 392.1 431 54.8
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 4.4e-107 392.1 283 73.5
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.7e-104 382.9 283 72.1
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 3.0e-103 379.4 405 55.6
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.5e-102 376.3 279 72.0
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.5e-102 376.3 279 72.0
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 8.1e-101 371.3 291 69.4
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 1.4e-100 370.5 283 71.0
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 8.9e-100 367.9 434 51.6
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 3.8e-98 362.5 310 67.4
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 9.0e-92 341.3 431 48.0
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 4.6e-88 328.9 405 52.3
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.6e-85 320.5 373 53.4
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 3.4e-83 312.8 439 43.3
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.8e-79 300.4 429 46.6
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 4.8e-77 292.4 283 55.8
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 5.1e-63 245.7 253 58.5
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 4.3e-54 216.1 418 37.3
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.8e-53 213.4 346 42.5
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-49 201.4 148 70.9
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.2e-48 198.0 439 33.5
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.7e-45 186.4 175 60.6
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.2e-43 181.4 299 37.8
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 7.7e-43 178.7 412 35.0
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.1e-41 174.9 332 36.4
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.1e-38 164.9 288 38.5
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.7e-37 159.8 132 62.9
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.6e-35 154.5 282 38.3
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.5e-30 137.9 283 33.9
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 4.8e-29 132.9 112 63.4
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.1e-28 131.7 174 47.7
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 5.2e-23 112.8 65 86.2
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 6.8e-23 112.5 278 29.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.7e-18 97.8 102 54.9
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.3e-18 97.4 56 83.9
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 8.6e-18 95.5 73 67.1
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 7.5e-14 82.4 65 64.6
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 3.2e-12 77.0 59 67.8
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 5.4e-12 76.3 102 45.1
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.7e-10 71.2 44 79.5
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.9e-09 67.8 50 62.0
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 2.1e-08 64.3 79 48.1
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 4.7e-08 63.2 36 80.6
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 4.7e-08 63.2 36 80.6
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 4.7e-08 63.2 36 80.6
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 8.0e-08 62.4 59 57.6
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 4.0e-07 60.1 42 71.4
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.2e-06 58.5 36 80.6
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 3.4e-06 57.0 100 42.0
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 5.8e-06 56.2 57 54.4


User provided reference genes

Program Settings