Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 1.5e-186 656.0 323 100.0
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 3.2e-112 409.1 336 64.0
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 2.4e-107 392.9 317 66.2
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 4.5e-106 388.7 319 64.6
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 2.9e-105 386.0 332 62.7
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 8.5e-105 384.4 322 61.8
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 1.1e-104 384.0 317 61.2
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 4.2e-104 382.1 322 60.9
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.2e-103 380.6 322 61.2
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 2.7e-103 379.4 322 60.6
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 2.7e-103 379.4 320 61.9
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 1.0e-102 377.5 331 59.8
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 4.0e-102 375.6 308 63.6
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 2.6e-101 372.9 322 60.6
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 4.4e-101 372.1 313 61.0
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 4.4e-101 372.1 259 71.0
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 1.1e-99 367.5 287 66.6
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.4e-99 367.1 314 61.8
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 2.4e-99 366.3 314 62.4
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 3.1e-99 365.9 245 72.7
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 5.3e-99 365.2 316 60.1
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 5.3e-99 365.2 330 60.0
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.6e-98 363.6 214 80.4
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.6e-98 363.6 245 73.1
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 3.5e-98 362.5 315 61.3
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 3.5e-98 362.5 316 59.8
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 4.5e-98 362.1 317 59.3
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 7.7e-98 361.3 317 59.0
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 7.7e-98 361.3 316 61.7
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 1.0e-97 360.9 321 58.6
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.7e-97 360.1 313 61.3
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 1.7e-97 360.1 288 62.5
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 5.0e-97 358.6 313 60.1
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 6.5e-97 358.2 274 66.8
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 8.5e-97 357.8 265 66.4
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 1.1e-96 357.5 307 60.9
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 1.5e-96 357.1 215 79.1
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.5e-96 357.1 335 57.6
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.9e-96 356.7 317 58.0
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 2.5e-96 356.3 243 69.5
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 3.2e-96 355.9 220 76.8
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 4.2e-96 355.5 265 66.4
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 2.7e-95 352.8 287 61.0
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 2.7e-95 352.8 228 74.6
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 4.7e-95 352.1 221 76.9
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 8.0e-95 351.3 311 58.2
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 2.3e-94 349.7 311 58.2
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 4.0e-94 349.0 326 59.2
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.2e-93 347.4 316 57.9
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 2.0e-93 346.7 288 62.2
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 2.6e-93 346.3 218 76.6
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 5.7e-93 345.1 275 63.3
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 9.8e-93 344.4 216 74.5
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 2.2e-92 343.2 287 62.0
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 2.8e-92 342.8 215 76.3
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 3.7e-92 342.4 317 57.4
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.8e-91 340.1 228 72.4
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 3.1e-91 339.3 315 59.4
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 5.4e-91 338.6 225 70.7
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 7.0e-91 338.2 223 70.9
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 2.7e-90 336.3 218 72.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.5e-90 335.9 216 74.1
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 4.5e-90 335.5 278 60.8
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 1.3e-89 334.0 270 62.2
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 1.3e-89 334.0 238 70.2
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 1.7e-89 333.6 321 57.6
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 8.6e-89 331.3 216 72.2
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 1.9e-88 330.1 268 61.9
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 3.2e-88 329.3 269 61.0
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 4.2e-88 328.9 223 69.5
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 7.2e-88 328.2 226 66.8
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.6e-87 327.0 216 70.8
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 2.1e-87 326.6 268 61.2
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 3.0e-86 322.8 275 59.3
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 3.0e-86 322.8 279 59.9
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 8.9e-86 321.2 268 59.7
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 4.4e-85 318.9 308 56.5
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 4.4e-85 318.9 225 66.7
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 1.3e-84 317.4 230 68.7
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 6.3e-84 315.1 268 58.6
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 2.4e-83 313.2 216 68.1
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 2.4e-83 313.2 216 68.1
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 2.4e-83 313.2 216 68.1
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 7.8e-82 308.1 214 71.0
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 2.9e-81 306.2 317 56.8
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 2.8e-79 299.7 217 64.5
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 4.7e-79 298.9 313 55.3
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 8.0e-79 298.1 185 76.8
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 2.3e-78 296.6 318 55.0
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 6.4e-76 288.5 174 79.9
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.4e-75 287.3 173 79.2
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 4.1e-75 285.8 264 56.8
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 5.4e-75 285.4 217 62.7
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 7.8e-74 281.6 173 76.9
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 1.7e-73 280.4 173 76.9
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.9e-72 276.9 181 73.5
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 2.5e-72 276.6 174 76.4
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 4.3e-72 275.8 181 72.9
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.8e-70 270.4 244 54.1
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 1.2e-66 257.7 239 56.5
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 5.6e-64 248.8 164 75.0
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 8.7e-49 198.4 150 66.0
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.5e-48 196.8 133 73.7
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 7.3e-48 195.3 133 72.9
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 9.6e-48 194.9 215 44.7
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 1.6e-47 194.1 215 44.7
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 2.8e-47 193.4 128 71.9
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 3.1e-46 189.9 224 47.3
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 4.9e-44 182.6 215 44.2
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 6.4e-44 182.2 136 61.0
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 7.1e-43 178.7 216 42.6
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.9e-41 172.9 204 50.5
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 5.6e-40 169.1 103 82.5
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 1.4e-38 164.5 126 66.7
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 9.9e-37 158.3 97 78.4
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.3e-33 147.1 109 63.3
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 1.5e-29 134.4 105 67.6
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 1.7e-28 131.0 134 56.0
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 1.7e-28 131.0 134 56.0
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.9e-24 117.5 78 71.8
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 2.1e-23 114.0 155 46.5
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 4.2e-19 99.8 61 73.8
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 9.3e-19 98.6 123 50.4
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.9e-17 93.2 56 78.6
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.3e-15 85.9 50 80.0
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 1.8e-14 84.3 112 46.4
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 2.4e-14 84.0 112 49.1
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 2.4e-14 84.0 112 49.1
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 5.5e-11 72.8 89 47.2
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 6.7e-09 65.9 48 62.5
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 2.8e-07 60.5 36 80.6
MBI07_g30978_MAGBIO Magnolia biondii HOM05D000450 ORTHO05D000327 1.8e-06 57.8 218 27.5
SalBow1G1243 Salvia bowleyana HOM05D000450 ORTHO05D000327 1.8e-06 57.8 199 29.6
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 2.4e-06 57.4 176 29.0
HPP92_008889 Vanilla planifolia HOM05D000450 ORTHO05D000327 2.4e-06 57.4 204 28.9
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 3.1e-06 57.0 36 72.2
Ciclev10002405m.g Citrus clementina HOM05D000450 ORTHO05D000327 6.9e-06 55.8 215 30.7
TAR381G0955 Trochodendron aralioides HOM05D000450 ORTHO05D000327 6.9e-06 55.8 207 30.9
CsaV3_6G031690 Cucumis sativus L. HOM05D000450 ORTHO05D000327 9.1e-06 55.5 218 29.8


User provided reference genes

Program Settings