Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 4.8e-177 624.4 314 100.0
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 2.2e-118 429.5 318 74.5
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 7.8e-87 324.7 323 58.5
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 8.1e-84 314.7 317 57.7
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.3e-83 313.2 315 59.0
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.5e-82 310.5 307 59.3
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 5.8e-82 308.5 301 58.1
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.7e-81 305.8 301 57.8
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.4e-80 303.9 312 57.7
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.4e-80 303.1 299 56.9
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 3.2e-80 302.8 323 56.3
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 5.4e-80 302.0 302 56.6
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 5.4e-80 302.0 312 55.8
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 7.1e-80 301.6 309 55.7
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.5e-79 299.3 309 56.6
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 7.8e-79 298.1 281 58.7
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 7.8e-79 298.1 280 59.3
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.7e-78 297.0 286 58.0
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.7e-78 297.0 236 69.1
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 2.3e-78 296.6 301 55.5
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 2.3e-78 296.6 276 59.8
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.0e-78 296.2 293 55.3
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.9e-78 295.8 293 55.3
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 3.9e-78 295.8 293 55.3
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 3.9e-78 295.8 280 58.9
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 8.6e-78 294.7 298 54.7
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.9e-77 293.5 307 56.0
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.9e-77 293.5 304 53.9
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 3.3e-77 292.7 307 54.7
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 3.3e-77 292.7 262 62.2
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 4.3e-77 292.4 305 54.4
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 5.6e-77 292.0 306 55.2
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 5.6e-77 292.0 243 64.2
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.6e-76 290.4 310 52.6
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.1e-76 290.0 307 54.4
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 2.1e-76 290.0 287 55.7
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 2.1e-76 290.0 319 54.2
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 6.2e-76 288.5 324 51.9
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 8.1e-76 288.1 244 63.9
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.8e-75 287.0 298 54.4
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.3e-75 286.6 305 52.5
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 6.8e-75 285.0 251 61.4
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.2e-74 284.3 308 51.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 3.4e-74 282.7 305 54.8
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 9.9e-74 281.2 255 60.4
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 9.9e-74 281.2 308 55.2
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.2e-73 280.0 258 58.5
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 3.7e-73 279.3 250 60.8
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.1e-72 277.7 290 53.1
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.4e-72 277.3 305 50.8
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.9e-72 276.9 282 53.9
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 2.4e-72 276.6 258 57.0
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 3.2e-72 276.2 337 48.4
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 9.2e-72 274.6 258 56.6
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.6e-71 273.9 262 55.7
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.6e-71 273.9 262 55.7
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 2.1e-71 273.5 304 51.3
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 4.6e-71 272.3 313 52.7
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 7.8e-71 271.6 278 54.7
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.3e-70 270.0 295 51.5
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 5.1e-70 268.9 257 57.2
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.1e-69 267.7 314 52.5
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 3.3e-69 266.2 322 49.7
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 5.6e-69 265.4 255 56.5
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 3.6e-68 262.7 254 57.9
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 3.6e-68 262.7 301 49.5
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 6.2e-68 261.9 283 53.0
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 6.2e-68 261.9 244 58.6
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 8.1e-68 261.5 245 59.2
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.1e-67 261.2 244 58.2
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.8e-67 260.4 238 58.4
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.8e-67 260.4 241 58.1
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 1.8e-67 260.4 254 55.9
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.8e-67 260.4 241 58.1
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 4.0e-67 259.2 249 60.6
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 8.9e-67 258.1 240 58.3
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.9e-67 258.1 280 51.1
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 2.0e-66 256.9 248 57.7
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.0e-66 256.9 236 58.5
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 2.6e-66 256.5 240 57.9
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 2.6e-66 256.5 240 57.9
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 2.6e-66 256.5 242 57.4
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 3.4e-66 256.1 264 54.9
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 5.8e-66 255.4 321 50.2
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 5.8e-66 255.4 248 57.3
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 7.6e-66 255.0 254 55.9
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.3e-65 254.2 292 51.7
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 2.2e-65 253.4 242 56.6
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.9e-65 253.1 290 50.7
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 3.8e-65 252.7 236 57.2
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 4.9e-65 252.3 244 58.2
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 6.4e-65 251.9 240 57.1
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 6.4e-65 251.9 244 56.1
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.4e-65 251.5 306 47.1
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.1e-64 251.1 297 47.5
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-64 250.0 306 46.7
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 7.1e-64 248.4 240 55.4
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 7.1e-64 248.4 244 57.0
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 9.3e-64 248.1 300 47.0
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 2.1e-63 246.9 244 56.6
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 4.6e-63 245.7 244 57.4
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 8.7e-62 241.5 222 59.0
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.1e-61 241.1 237 55.7
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.9e-61 240.4 266 49.2
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 9.6e-61 238.0 240 55.4
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 1.6e-60 237.3 247 56.7
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 2.8e-60 236.5 240 55.4
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 3.4e-58 229.6 244 54.1
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 4.4e-58 229.2 219 56.6
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 7.9e-55 218.4 228 52.2
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 3.9e-54 216.1 213 52.1
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.6e-52 210.7 187 60.4
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 3.6e-52 209.5 243 50.6
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 6.2e-52 208.8 235 49.4
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 7.6e-50 201.8 239 49.8
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 6.4e-49 198.7 205 56.6
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 4.2e-48 196.1 94 100.0
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 6.0e-47 192.2 198 55.6
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 3.9e-46 189.5 230 49.6
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 6.7e-46 188.7 209 52.2
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 6.7e-46 188.7 234 44.0
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 8.1e-44 181.8 194 52.6
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 2.2e-41 173.7 209 49.8
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.8e-41 172.9 162 58.0
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 3.0e-38 163.3 171 53.2
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 3.0e-30 136.7 99 67.7
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.9e-30 136.3 113 67.3
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.9e-30 136.3 113 67.3
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 2.2e-28 130.6 200 41.5
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.7e-28 129.8 302 33.4
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.6e-26 123.6 304 33.9
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 3.6e-23 113.2 94 63.8
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 1.0e-22 111.7 93 65.6
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 2.2e-20 104.0 83 67.5
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 6.3e-20 102.4 186 33.9
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 5.3e-19 99.4 203 30.5
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 9.1e-19 98.6 186 33.9
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 5.3e-11 72.8 138 39.1
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 4.5e-10 69.7 41 75.6
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 4.2e-08 63.2 61 52.5
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 9.4e-08 62.0 264 27.3
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.7e-07 59.7 119 35.3
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 8.0e-07 58.9 41 73.2


User provided reference genes

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