Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2911.3 1475 100.0
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2343.5 1548 78.7
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2334.7 1548 76.6
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2326.6 1618 75.2
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2305.4 1549 76.3
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2252.2 1554 74.4
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2250.3 1550 74.8
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2243.8 1548 73.4
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2234.1 1558 73.2
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2232.6 1562 72.6
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2231.8 1537 73.8
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2222.2 1557 73.6
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2221.8 1559 72.9
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2217.6 1550 72.1
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2214.5 1547 74.9
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2210.6 1548 73.5
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2202.2 1550 72.4
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2199.9 1501 73.8
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2194.5 1550 71.9
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2192.2 1550 72.5
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2177.9 1570 72.3
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2175.6 1460 76.0
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2171.0 1550 71.4
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2164.4 1550 70.8
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2163.7 1549 70.5
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2158.3 1563 70.3
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2155.6 1549 70.2
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2153.6 1550 70.6
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2153.3 1563 70.2
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2151.3 1549 70.4
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2146.3 1551 69.7
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2135.1 1553 69.3
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2125.1 1550 69.7
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2124.4 1553 70.6
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2121.7 1551 68.9
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2100.1 1561 69.0
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2099.3 1546 70.0
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2098.2 1555 69.5
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2095.1 1552 68.1
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2090.1 1551 68.0
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2090.1 1550 69.2
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2090.1 1573 67.1
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2088.9 1552 68.5
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2087.0 1464 72.7
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2074.7 1551 67.8
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2073.9 1551 67.4
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2072.7 1553 68.1
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2069.3 1588 67.1
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2060.8 1550 68.6
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2037.7 1562 67.4
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2035.8 1557 66.7
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2035.4 1569 66.4
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2033.1 1563 67.6
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2032.7 1434 72.1
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2030.0 1505 69.0
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2025.8 1577 66.2
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2023.8 1546 67.7
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2021.5 1572 66.0
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2015.7 1551 66.4
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2011.9 1601 67.8
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2008.0 1547 66.8
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2000.7 1861 58.8
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 1993.8 1558 65.9
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 1993.0 1573 65.5
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 1991.9 1574 65.6
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 1989.5 1571 65.7
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 1983.8 1551 65.0
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1979.5 1521 66.7
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1964.9 1515 66.2
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 1963.3 1521 66.3
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1963.0 1558 65.0
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1961.8 1521 66.2
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 1961.8 1459 69.1
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 1953.3 1340 72.2
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 1948.3 1544 66.0
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1941.0 1528 65.6
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 1937.5 1532 65.3
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 1932.9 1531 65.4
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 1928.3 1517 65.3
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1924.1 1519 65.4
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1924.1 1517 65.1
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1897.9 1407 70.5
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1893.2 1188 78.6
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1880.5 1558 63.2
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1868.2 1558 62.5
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1854.0 1882 54.0
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1815.0 1368 68.9
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1812.7 1550 61.3
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1800.0 1425 66.7
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1796.9 1552 61.3
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1779.6 1520 61.8
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1771.5 1437 64.6
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1751.5 1514 60.8
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1742.2 1533 60.6
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1739.9 1210 73.1
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1659.0 1092 75.0
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1606.3 971 82.2
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1578.5 1362 62.2
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1565.8 975 80.0
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1555.4 1415 61.9
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1280.4 1585 46.2
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1251.9 1069 60.9
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1233.0 1523 46.2
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1229.2 1571 44.7
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1192.2 1478 50.0
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1181.8 1180 53.3
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1140.9 723 77.5
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 3.6e-243 846.3 593 71.7
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 1.4e-231 807.7 524 76.7
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.0e-229 801.6 495 81.2
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 3.0e-229 800.0 644 66.1
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.9e-223 780.8 647 61.8
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 2.3e-205 720.7 522 69.9
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 1.3e-197 694.9 583 64.2
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.0e-193 681.0 601 63.7
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.4e-193 680.2 592 64.2
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 2.7e-190 670.6 587 62.4
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.3e-176 625.2 553 61.7
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 3.1e-146 524.2 641 47.6
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 1.1e-143 515.8 368 72.6
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.7e-139 501.9 338 70.7
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 7.0e-138 496.5 325 78.5
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.4e-132 477.6 324 75.9
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 5.0e-128 463.8 440 60.2
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 5.6e-127 460.3 292 79.8
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.5e-124 452.2 518 52.3
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 6.6e-120 436.8 317 71.0
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 1.2e-113 416.0 460 51.7
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.3e-111 407.9 313 67.4
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.2e-110 406.0 400 53.2
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.2e-110 406.0 250 78.0
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 7.6e-108 396.7 354 58.5
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 1.5e-103 382.5 416 53.1
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.0e-96 358.2 454 45.8
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 1.4e-93 349.4 362 56.9
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.6e-70 272.7 211 67.8
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 5.9e-68 264.2 154 81.2
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 9.4e-66 256.9 151 82.1
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 6.5e-59 234.2 141 77.3
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 7.2e-58 230.7 398 38.7
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 7.2e-58 230.7 142 77.5
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 9.4e-50 203.8 203 55.2
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 3.7e-46 191.8 146 65.8
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.3e-43 183.3 122 74.6
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 4.7e-41 174.9 129 69.8
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 4.4e-39 168.3 176 49.4
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.9e-36 157.9 158 56.3
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.7e-36 157.5 158 56.3
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.7e-36 157.5 158 56.3
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.7e-36 157.5 158 56.3
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.7e-36 157.5 158 56.3
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.7e-36 157.5 158 56.3
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-35 157.1 158 55.7
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 1.7e-35 156.4 92 79.3
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.7e-35 156.4 139 56.1
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 1.1e-34 153.7 93 76.3
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.5e-34 153.3 158 55.1
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 1.0e-32 147.1 84 81.0
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.2e-32 144.8 93 72.0
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 2.4e-29 136.0 97 68.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.5e-28 131.7 145 52.4
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.7e-28 131.0 145 52.4
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 6.6e-27 127.9 84 67.9
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.8e-21 109.8 108 57.4
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 4.0e-16 92.0 74 56.8
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 6.8e-16 91.3 51 76.5
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.7e-14 86.7 56 71.4
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.2e-14 86.3 55 72.7
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.1e-13 84.0 82 57.3
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 9.2e-13 80.9 54 70.4
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 2.1e-09 69.7 176 34.7
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.1e-08 67.4 53 62.3
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.3e-06 60.5 41 68.3


User provided reference genes

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