Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 4.0e-113 411.4 199 100.0
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 5.8e-88 327.8 172 90.1
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 8.4e-87 323.9 174 87.9
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.1e-86 323.6 174 89.1
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.4e-86 322.4 174 89.1
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 4.2e-86 321.6 174 88.5
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 7.1e-86 320.9 174 87.9
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 7.1e-86 320.9 174 87.9
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 9.3e-86 320.5 174 87.9
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.2e-85 320.1 174 86.8
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.2e-85 320.1 174 87.4
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.6e-85 319.7 174 86.8
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.6e-85 319.7 174 87.9
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 2.7e-85 318.9 172 87.8
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 3.5e-85 318.5 172 87.8
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 4.6e-85 318.2 173 86.1
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.8e-84 316.2 172 87.8
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.3e-84 315.8 174 85.6
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 5.1e-84 314.7 174 84.5
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.5e-83 313.2 174 85.1
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.9e-83 312.8 172 86.6
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 3.3e-83 312.0 174 84.5
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 7.4e-83 310.8 174 85.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 9.6e-83 310.5 174 86.2
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.6e-82 309.7 174 84.5
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.6e-82 309.7 174 85.6
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 2.1e-82 309.3 174 83.3
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.1e-82 309.3 202 74.3
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.8e-82 308.9 174 83.3
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.7e-82 308.5 174 85.1
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 3.7e-82 308.5 186 78.0
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 6.2e-82 307.8 174 85.1
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.2e-82 307.8 202 74.3
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 6.2e-82 307.8 174 84.5
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 8.1e-82 307.4 174 83.9
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.1e-81 307.0 174 83.9
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.1e-81 307.0 174 84.5
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.4e-81 306.6 186 79.0
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.8e-81 306.2 174 84.5
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.4e-81 305.8 174 83.9
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 2.4e-81 305.8 186 80.1
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.1e-81 305.4 174 83.9
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 3.1e-81 305.4 172 84.3
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 4.0e-81 305.1 174 83.9
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.0e-81 305.1 174 83.9
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 6.9e-81 304.3 174 81.6
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 9.0e-81 303.9 174 82.8
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 9.0e-81 303.9 174 82.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 9.0e-81 303.9 172 83.7
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.2e-80 303.5 174 83.9
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.5e-80 303.1 174 83.3
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.5e-80 303.1 174 83.3
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.5e-80 303.1 186 76.9
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.0e-80 302.8 186 76.9
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.0e-80 302.8 174 83.9
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.6e-80 302.4 174 83.3
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.6e-80 302.4 174 82.8
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 2.6e-80 302.4 174 82.8
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 3.4e-80 302.0 173 82.7
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 3.4e-80 302.0 172 83.1
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.4e-80 302.0 174 81.6
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.4e-80 302.0 174 81.6
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 4.5e-80 301.6 185 77.8
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.0e-79 300.4 174 82.8
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.0e-79 300.4 176 81.8
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.3e-79 300.1 174 82.2
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.3e-79 300.1 186 75.3
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.7e-79 299.7 188 77.1
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.7e-79 299.7 174 81.0
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 1.7e-79 299.7 172 80.8
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.2e-79 299.3 174 81.6
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.2e-79 299.3 188 77.7
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 2.2e-79 299.3 206 70.4
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 2.2e-79 299.3 174 82.2
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.9e-79 298.9 174 81.6
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.9e-79 298.9 174 80.5
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 3.8e-79 298.5 174 81.6
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 3.8e-79 298.5 188 75.5
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.8e-79 298.5 174 82.2
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.9e-79 298.1 188 76.1
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 6.5e-79 297.7 199 75.4
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 6.5e-79 297.7 188 76.1
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 6.5e-79 297.7 186 74.2
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 6.5e-79 297.7 174 81.0
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 6.5e-79 297.7 174 81.0
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 6.5e-79 297.7 174 81.0
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 6.5e-79 297.7 174 81.0
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 6.5e-79 297.7 174 81.6
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 8.4e-79 297.4 174 81.0
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.4e-78 296.6 174 80.5
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.4e-78 296.6 174 79.3
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.9e-78 296.2 174 80.5
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 2.5e-78 295.8 174 81.0
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 2.5e-78 295.8 174 81.0
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.5e-78 295.8 174 80.5
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 3.2e-78 295.4 175 80.6
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 3.2e-78 295.4 174 77.6
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 3.2e-78 295.4 174 78.7
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 3.2e-78 295.4 186 74.2
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 5.5e-78 294.7 174 78.2
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 9.3e-78 293.9 172 80.8
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 1.6e-77 293.1 186 74.2
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 2.1e-77 292.7 174 81.0
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 4.6e-77 291.6 205 67.8
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 7.9e-77 290.8 186 73.1
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.0e-76 290.4 205 68.3
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.3e-76 290.0 198 69.7
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.3e-76 290.0 175 76.0
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 2.3e-76 289.3 196 69.9
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 3.0e-76 288.9 177 78.5
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.5e-75 286.6 174 76.4
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.9e-75 286.2 174 78.2
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 2.5e-75 285.8 193 71.5
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 5.7e-75 284.6 186 72.6
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 5.7e-75 284.6 167 82.0
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 5.7e-75 284.6 167 82.0
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.6e-74 283.1 167 80.8
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 2.1e-74 282.7 176 75.0
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.8e-74 282.3 188 73.4
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.8e-74 282.3 148 91.9
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.7e-74 282.0 178 77.0
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 6.9e-73 277.7 174 77.0
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 6.9e-73 277.7 232 62.5
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 4.5e-72 275.0 206 71.4
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.3e-71 273.5 172 76.7
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 5.0e-71 271.6 149 85.2
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 5.0e-71 271.6 147 88.4
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 8.7e-68 260.8 151 79.5
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.5e-67 260.0 149 83.9
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 4.3e-67 258.5 164 75.6
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 8.2e-66 254.2 149 81.2
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.5e-64 250.0 149 77.2
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 6.1e-61 238.0 133 85.0
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 6.7e-60 234.6 174 59.8
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.7e-53 212.6 174 58.6
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 5.7e-51 204.9 175 58.3
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 7.7e-48 194.5 110 86.4
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 6.5e-47 191.4 193 54.9
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 6.5e-47 191.4 193 54.9
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.5e-46 189.5 110 83.6
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 3.7e-42 175.6 110 75.5
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.6e-37 159.1 88 84.1
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 4.7e-37 158.7 153 48.4
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 2.4e-33 146.4 117 62.4
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 5.5e-30 135.2 135 51.1
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 3.6e-29 132.5 72 87.5
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 8.0e-29 131.3 66 89.4
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 4.9e-26 122.1 175 37.7
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 4.1e-25 119.0 72 77.8
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 5.0e-23 112.1 75 77.3
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 7.3e-22 108.2 108 57.4
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 9.5e-22 107.8 100 55.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 9.5e-22 107.8 100 55.0
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.2e-21 107.5 168 35.7
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 3.0e-15 86.3 83 57.8
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 4.3e-14 82.4 94 52.1
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.5e-11 73.9 66 53.0
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.1e-09 67.8 172 29.7
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 1.9e-09 67.0 165 29.1
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 2.7e-08 63.2 38 76.3
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 3.5e-08 62.8 54 59.3
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 3.9e-07 59.3 65 46.2
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 8.6e-07 58.2 188 26.1


User provided reference genes

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