Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 7.1e-113 410.6 206 100.0
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 5.1e-71 271.6 203 68.0
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 3.4e-67 258.8 208 67.8
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.0e-66 257.3 208 67.3
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 1.2e-64 250.4 202 65.3
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 2.1e-64 249.6 207 62.8
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 2.1e-64 249.6 203 63.5
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.4e-60 236.9 206 61.7
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 3.1e-60 235.7 207 58.9
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 4.1e-60 235.3 209 59.8
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 9.1e-60 234.2 209 59.8
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 1.5e-59 233.4 207 60.4
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 2.6e-59 232.6 207 59.9
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 1.3e-58 230.3 207 59.4
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 3.8e-58 228.8 205 58.5
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 8.5e-58 227.6 210 58.6
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 1.1e-57 227.3 206 59.2
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 1.4e-57 226.9 206 59.2
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.9e-57 226.5 206 58.7
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 2.5e-57 226.1 204 60.8
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 5.5e-57 224.9 211 58.8
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 5.5e-57 224.9 207 59.9
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.6e-56 223.4 207 58.0
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 1.6e-56 223.4 207 59.4
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 3.6e-56 222.2 214 55.6
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 3.6e-56 222.2 193 59.6
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 4.7e-56 221.9 245 51.8
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.1e-56 221.5 204 59.8
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 7.9e-56 221.1 203 57.6
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.0e-55 220.7 204 59.3
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 3.0e-55 219.2 204 58.3
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 3.9e-55 218.8 186 60.8
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 6.7e-55 218.0 207 58.0
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 6.7e-55 218.0 207 57.0
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.5e-54 216.9 195 57.4
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 3.3e-54 215.7 208 58.7
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 3.3e-54 215.7 207 56.5
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 3.3e-54 215.7 207 55.6
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 5.7e-54 214.9 201 59.2
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 5.7e-54 214.9 201 59.2
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 5.7e-54 214.9 220 56.8
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 7.4e-54 214.5 212 57.5
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 9.7e-54 214.2 208 59.1
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 1.3e-53 213.8 212 57.1
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 2.8e-53 212.6 193 56.5
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 2.8e-53 212.6 205 56.6
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 2.4e-52 209.5 208 52.4
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 2.4e-52 209.5 186 61.8
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 3.1e-52 209.1 197 58.4
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.2e-51 207.2 195 56.4
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 1.2e-51 207.2 207 54.6
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 2.0e-51 206.5 207 54.6
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 2.0e-51 206.5 188 56.4
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.6e-51 206.1 186 60.8
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 4.5e-51 205.3 206 53.4
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 1.3e-50 203.8 200 57.0
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 1.3e-50 203.8 187 56.1
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.3e-50 203.8 191 56.5
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.7e-50 203.4 206 53.9
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 8.5e-50 201.1 303 41.9
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 1.5e-49 200.3 198 53.0
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.9e-49 199.9 186 55.9
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 3.2e-49 199.1 209 52.6
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 5.5e-49 198.4 206 52.4
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 8.0e-48 194.5 256 46.5
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 1.8e-47 193.4 186 55.4
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 1.8e-47 193.4 133 73.7
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 2.3e-47 193.0 197 53.8
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 5.2e-47 191.8 188 55.3
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 1.2e-46 190.7 192 55.7
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.5e-46 190.3 193 52.3
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 1.5e-46 190.3 193 51.3
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 2.0e-46 189.9 191 54.5
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 2.0e-46 189.9 191 54.5
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 2.0e-46 189.9 197 53.3
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 2.6e-46 189.5 195 54.4
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 2.6e-46 189.5 186 55.9
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.3e-46 189.1 172 59.9
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 4.4e-46 188.7 195 53.3
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 7.5e-46 188.0 206 51.5
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 1.3e-45 187.2 191 53.9
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 2.2e-45 186.4 185 55.1
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 2.2e-45 186.4 191 53.9
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 3.7e-45 185.7 195 52.8
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 3.7e-45 185.7 290 41.4
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 3.7e-45 185.7 206 50.0
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 8.2e-45 184.5 186 54.8
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 1.1e-44 184.1 186 53.2
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 1.8e-44 183.3 176 56.2
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 5.3e-44 181.8 185 51.4
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 7.0e-44 181.4 195 52.3
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 7.0e-44 181.4 209 48.8
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 9.1e-44 181.0 196 53.1
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 5.9e-43 178.3 187 54.5
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 2.2e-42 176.4 134 66.4
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 2.2e-42 176.4 205 51.2
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 3.2e-41 172.6 346 35.5
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 9.4e-41 171.0 239 44.4
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 6.1e-40 168.3 187 51.9
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.4e-39 167.2 200 48.5
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 5.7e-38 161.8 172 52.9
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 2.0e-35 153.3 164 54.3
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 2.0e-35 153.3 112 69.6
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.9e-34 149.4 159 54.7
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 3.8e-34 149.1 123 59.3
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 3.3e-33 146.0 121 60.3
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 9.8e-30 134.4 190 41.1
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 4.9e-29 132.1 111 57.7
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 8.3e-29 131.3 186 41.4
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.7e-27 126.3 189 39.7
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 5.9e-27 125.2 185 41.6
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.3e-26 123.2 197 38.6
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 1.1e-25 120.9 137 46.0
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 6.1e-24 115.2 119 52.1
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 6.1e-24 115.2 110 53.6
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 5.2e-23 112.1 122 51.6
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 4.6e-19 99.0 95 53.7
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.0e-18 97.8 108 50.0
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 3.3e-17 92.8 126 44.4
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.4e-14 82.8 90 48.9
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.4e-14 82.4 90 50.0
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 7.5e-14 81.6 94 45.7
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.7e-13 80.5 87 48.3
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 2.2e-13 80.1 193 29.5
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 6.4e-13 78.6 134 34.3
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.4e-12 77.4 66 54.5
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 1.9e-12 77.0 86 47.7
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 2.0e-11 73.6 56 62.5
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 3.9e-10 69.3 196 30.6
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 6.6e-10 68.6 70 57.1
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.5e-09 66.6 45 64.4
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 3.3e-09 66.2 55 67.3
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.3e-09 65.9 49 63.3
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.2e-08 64.3 84 44.0
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 8.1e-08 61.6 154 31.8


User provided reference genes

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