Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 1.3e-29 132.1 56 100.0
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.1e-20 102.4 53 77.4
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.1e-20 102.4 53 77.4
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 9.5e-20 99.4 50 80.0
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.2e-19 99.0 54 74.1
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 8.0e-19 96.3 50 74.0
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 8.0e-19 96.3 50 76.0
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.4e-18 95.5 50 74.0
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.4e-18 95.5 50 74.0
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.8e-18 95.1 50 76.0
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 1.8e-18 95.1 50 76.0
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 4.0e-18 94.0 50 74.0
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 6.8e-18 93.2 51 68.6
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 6.8e-18 93.2 50 74.0
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 8.9e-18 92.8 50 74.0
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.2e-17 92.4 50 72.0
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.2e-17 92.4 50 72.0
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 1.2e-17 92.4 50 72.0
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.2e-17 92.4 50 74.0
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.2e-17 92.4 50 72.0
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.5e-17 92.0 50 72.0
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.5e-17 92.0 54 68.5
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.5e-17 92.0 50 70.0
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.5e-17 92.0 50 72.0
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 1.5e-17 92.0 50 72.0
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 2.6e-17 91.3 50 70.0
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.6e-17 91.3 50 74.0
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.6e-17 91.3 50 70.0
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 2.6e-17 91.3 50 72.0
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.6e-17 91.3 50 74.0
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 3.4e-17 90.9 50 66.0
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 3.4e-17 90.9 50 70.0
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 3.4e-17 90.9 50 72.0
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 3.4e-17 90.9 50 72.0
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.4e-17 90.5 50 70.0
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 4.4e-17 90.5 50 70.0
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 5.8e-17 90.1 46 76.1
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 5.8e-17 90.1 50 68.0
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 5.8e-17 90.1 50 72.0
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 7.5e-17 89.7 54 64.8
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 7.5e-17 89.7 53 62.3
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 9.8e-17 89.4 51 68.6
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 9.8e-17 89.4 51 68.6
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 9.8e-17 89.4 51 68.6
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 9.8e-17 89.4 51 68.6
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 9.8e-17 89.4 51 68.6
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 9.8e-17 89.4 51 68.6
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 9.8e-17 89.4 50 68.0
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 9.8e-17 89.4 50 66.0
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.8e-17 89.4 50 66.0
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.8e-17 89.4 50 66.0
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.8e-17 89.4 50 66.0
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.3e-16 89.0 52 63.5
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.3e-16 89.0 50 72.0
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.3e-16 89.0 50 66.0
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.3e-16 89.0 50 70.0
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 1.3e-16 89.0 50 68.0
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.7e-16 88.6 45 75.6
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 2.2e-16 88.2 50 68.0
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.2e-16 88.2 50 66.0
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 2.2e-16 88.2 50 68.0
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 2.2e-16 88.2 50 68.0
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.9e-16 87.8 51 66.7
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.9e-16 87.8 50 70.0
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 2.9e-16 87.8 50 68.0
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 2.9e-16 87.8 50 70.0
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.9e-16 87.8 50 70.0
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.9e-16 87.8 51 66.7
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 3.7e-16 87.4 49 71.4
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 4.9e-16 87.0 50 68.0
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 4.9e-16 87.0 51 70.6
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 6.4e-16 86.7 49 69.4
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 6.4e-16 86.7 51 66.7
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 6.4e-16 86.7 50 68.0
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 6.4e-16 86.7 54 68.5
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 8.3e-16 86.3 50 64.0
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.1e-15 85.9 55 60.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.1e-15 85.9 54 61.1
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.1e-15 85.9 50 68.0
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.4e-15 85.5 50 64.0
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.4e-15 85.5 50 64.0
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.4e-15 85.5 50 62.0
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.4e-15 85.5 50 66.0
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.4e-15 85.5 50 68.0
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.9e-15 85.1 56 62.5
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-15 85.1 50 66.0
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.2e-15 84.3 50 64.0
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 3.2e-15 84.3 50 64.0
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.2e-15 84.3 50 64.0
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-15 84.3 50 66.0
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-15 84.3 50 66.0
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-15 84.3 50 66.0
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-15 84.3 50 66.0
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-15 84.3 50 66.0
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 3.2e-15 84.3 50 66.0
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 3.2e-15 84.3 51 68.6
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 5.4e-15 83.6 53 58.5
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 5.4e-15 83.6 51 60.8
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 5.4e-15 83.6 51 60.8
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.4e-15 83.6 50 66.0
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 5.4e-15 83.6 56 62.5
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 7.0e-15 83.2 51 60.8
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.0e-15 83.2 51 68.6
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 7.0e-15 83.2 50 66.0
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 9.2e-15 82.8 52 63.5
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 9.2e-15 82.8 52 63.5
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 9.2e-15 82.8 52 59.6
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.2e-15 82.8 50 70.0
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 9.2e-15 82.8 50 68.0
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 9.2e-15 82.8 55 58.2
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.2e-14 82.4 45 68.9
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.6e-14 82.0 55 56.4
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.0e-14 81.6 50 66.0
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 2.0e-14 81.6 49 63.3
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.7e-14 81.3 41 75.6
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.7e-14 81.3 41 75.6
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 2.7e-14 81.3 42 71.4
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 3.5e-14 80.9 45 68.9
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 4.6e-14 80.5 50 62.0
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 4.6e-14 80.5 54 59.3
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 4.6e-14 80.5 53 60.4
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 4.6e-14 80.5 41 75.6
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.0e-14 80.1 51 70.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 6.0e-14 80.1 53 60.4
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 7.8e-14 79.7 50 68.0
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.8e-14 79.7 50 68.0
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 7.8e-14 79.7 50 60.0
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.0e-13 79.3 43 72.1
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.0e-13 79.3 50 64.0
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.0e-13 79.3 55 54.5
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 1.0e-13 79.3 51 62.7
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.3e-13 79.0 47 61.7
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 3.0e-13 77.8 49 65.3
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 5.0e-13 77.0 45 64.4
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 8.6e-13 76.3 50 66.0
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-12 75.5 41 68.3
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.5e-12 75.5 40 75.0
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.9e-12 75.1 50 58.0
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.9e-12 75.1 50 58.0
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.3e-12 73.9 49 61.2
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.3e-12 73.2 43 62.8
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 7.3e-12 73.2 41 65.9
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 9.5e-12 72.8 49 57.1
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 9.5e-12 72.8 50 58.0
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 4.7e-11 70.5 38 65.8
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 6.2e-11 70.1 50 52.0
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 6.2e-11 70.1 44 59.1
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 6.2e-11 70.1 47 48.9
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 5.2e-10 67.0 45 57.8
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 2.6e-09 64.7 44 56.8
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 3.4e-09 64.3 50 44.0
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.3e-08 62.4 28 82.1
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.7e-08 62.0 41 51.2
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.9e-08 61.2 40 60.0
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.1e-07 59.3 50 48.0


User provided reference genes

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