Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.4e-210 736.1 386 100.0
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.9e-119 433.3 345 66.4
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 4.7e-110 402.1 346 62.7
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 6.6e-104 381.7 355 59.7
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 9.5e-103 377.9 347 61.1
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 8.1e-102 374.8 355 59.7
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 9.2e-98 361.3 353 58.4
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 7.3e-95 351.7 342 55.8
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.7e-91 340.5 333 56.8
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.2e-91 340.1 342 55.3
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 8.4e-91 338.2 353 55.0
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.2e-90 336.3 307 59.9
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 4.1e-90 335.9 355 54.6
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 7.1e-90 335.1 350 53.4
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 3.5e-89 332.8 355 53.5
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 6.0e-89 332.0 351 54.4
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 6.0e-89 332.0 355 54.1
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.0e-88 331.3 349 52.4
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.0e-88 331.3 350 52.9
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.3e-88 330.9 345 53.9
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.3e-88 330.9 354 53.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.7e-88 330.5 350 52.6
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 3.9e-88 329.3 349 53.6
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 3.9e-88 329.3 349 53.6
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 8.7e-88 328.2 349 53.3
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.9e-87 327.0 346 52.6
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 4.3e-87 325.9 349 53.6
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 9.6e-87 324.7 351 53.3
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 9.6e-87 324.7 344 52.0
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.6e-86 323.9 352 53.1
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 3.6e-86 322.8 349 52.1
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.4e-85 320.1 352 50.6
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 3.1e-85 319.7 357 52.4
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.0e-85 318.2 352 50.3
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.2e-84 317.8 349 52.4
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.6e-84 316.6 356 50.6
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 3.4e-84 316.2 348 51.7
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.4e-84 316.2 357 51.0
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 5.8e-84 315.5 351 52.7
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.9e-83 313.2 359 51.5
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 2.9e-83 313.2 320 54.1
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 6.4e-83 312.0 356 50.6
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.4e-83 311.6 353 49.9
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.1e-82 311.2 353 48.7
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.1e-82 311.2 353 49.9
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.2e-82 309.3 349 53.0
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.6e-81 307.4 352 49.4
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.6e-81 307.4 311 53.4
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 2.1e-81 307.0 349 51.0
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.3e-80 304.3 391 47.1
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 5.1e-80 302.4 352 49.7
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 6.6e-80 302.0 352 49.7
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 8.7e-80 301.6 321 51.4
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.1e-79 301.2 301 57.8
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.9e-79 300.4 348 50.3
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 2.1e-78 297.0 355 49.6
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 2.8e-78 296.6 347 50.1
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 6.2e-78 295.4 327 50.8
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 8.1e-78 295.0 348 50.0
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.4e-77 294.3 352 47.2
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.4e-77 294.3 351 49.9
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.8e-77 293.9 346 49.7
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.1e-77 293.1 352 47.4
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.0e-77 292.7 347 49.9
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.0e-77 292.7 352 47.4
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 5.3e-77 292.4 305 54.4
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.2e-76 291.2 330 51.8
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 1.5e-76 290.8 350 50.3
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 2.0e-76 290.4 303 53.8
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 3.4e-76 289.7 346 48.8
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 4.5e-76 289.3 346 48.8
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 4.5e-76 289.3 352 48.6
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.9e-76 288.1 352 47.4
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.3e-75 287.7 346 48.6
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.6e-73 280.8 351 48.7
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 2.1e-73 280.4 348 47.1
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.7e-73 280.0 352 46.6
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.5e-73 279.6 352 46.9
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.8e-72 277.3 349 48.1
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 6.7e-72 275.4 348 46.6
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.3e-71 273.1 346 46.2
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.1e-69 268.1 347 45.5
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 3.1e-69 266.5 333 46.8
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 5.3e-69 265.8 329 47.1
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.5e-68 264.2 353 44.5
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.4e-66 257.7 351 45.9
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 2.7e-65 253.4 307 48.2
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 2.7e-65 253.4 331 45.9
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-64 251.1 348 41.4
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.3e-64 251.1 348 41.4
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.3e-64 251.1 348 41.1
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 2.3e-64 250.4 349 39.8
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 3.0e-64 250.0 355 39.2
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 6.7e-64 248.8 348 39.9
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 8.7e-64 248.4 345 41.2
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 8.7e-64 248.4 345 41.2
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 2.5e-63 246.9 350 44.6
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 4.3e-63 246.1 350 44.3
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 9.6e-63 245.0 353 42.5
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.3e-62 244.6 375 42.7
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.6e-62 244.2 351 42.5
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.6e-62 244.2 352 39.8
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.1e-62 243.8 341 45.5
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 6.2e-62 242.3 351 41.9
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.1e-61 241.5 348 40.5
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.6e-60 236.9 348 39.9
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.0e-59 235.0 325 41.5
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 2.2e-59 233.8 350 40.0
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.2e-59 233.8 348 39.1
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 2.9e-59 233.4 349 39.5
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.9e-59 233.4 349 39.5
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 6.5e-59 232.3 260 49.6
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 8.4e-59 231.9 348 39.1
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.5e-58 230.3 309 46.3
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 5.5e-58 229.2 349 38.4
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 5.5e-58 229.2 349 38.4
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.2e-57 228.0 347 39.8
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 2.7e-57 226.9 348 38.8
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.1e-55 221.5 348 37.9
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.3e-54 218.0 314 41.4
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.3e-54 218.0 348 37.6
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-54 218.0 348 37.6
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.1e-53 213.0 276 44.9
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 5.0e-51 206.1 262 45.0
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.9e-50 204.1 350 37.1
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 7.2e-50 202.2 309 38.8
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 2.7e-49 200.3 328 37.5
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.1e-47 194.9 353 36.3
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.5e-47 194.5 200 51.5
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 9.1e-45 185.3 314 37.6
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 9.1e-29 132.1 152 46.1
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-28 131.7 128 49.2
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.7e-27 127.9 127 48.0
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 8.5e-27 125.6 199 40.2
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.7e-25 119.8 121 48.8
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.8e-24 117.9 109 62.4
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.7e-24 115.9 117 48.7
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.2e-22 110.9 262 32.1
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 3.1e-21 107.1 244 32.8
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.0e-20 104.4 295 29.5
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 2.7e-20 104.0 344 28.2
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 3.5e-20 103.6 91 52.7
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.8e-19 100.1 200 32.0
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.1e-18 98.6 291 28.5
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.5e-18 97.4 108 49.1
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 4.7e-17 93.2 362 26.5
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 4.0e-16 90.1 83 65.1
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 1.2e-15 88.6 83 63.9
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 4.4e-15 86.7 365 26.8
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 5.7e-15 86.3 67 71.6
Oeu051052.1 Olea europaea HOM05D002428 ORTHO05D005085 5.4e-13 79.7 67 70.1
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 7.0e-13 79.3 55 76.4
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 1.6e-12 78.2 76 61.8
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.6e-12 78.2 62 69.4
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 1.7e-11 74.7 271 28.0
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 2.9e-11 73.9 116 42.2
Oeu059684.1 Olea europaea HOM05D067431 ORTHO05D005085 5.0e-11 73.2 75 58.7
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 2.8e-09 67.4 111 36.0
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 3.6e-09 67.0 66 50.0
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.7e-09 66.6 89 40.4
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.7e-09 66.6 89 40.4
Oeu014904.1 Olea europaea HOM05D002428 ORTHO05D005085 2.3e-08 64.3 77 55.8


User provided reference genes

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