Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 3.1e-217 758.1 356 100.0
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 2.3e-159 565.8 356 73.3
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.9e-159 565.1 360 73.6
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.6e-159 563.9 364 72.3
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 2.5e-158 562.4 361 71.7
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.6e-157 559.7 370 71.6
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.5e-155 553.1 361 72.9
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 4.4e-155 551.6 364 70.1
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.3e-154 550.1 354 70.9
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.9e-154 548.9 365 69.9
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 3.8e-154 548.5 356 71.6
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 6.4e-154 547.7 354 68.9
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.1e-153 547.0 356 71.6
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.4e-153 545.8 360 69.4
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 5.4e-153 544.7 356 71.3
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.7e-152 542.3 363 69.7
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 3.5e-152 542.0 366 70.8
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 6.0e-152 541.2 363 68.3
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.7e-151 539.7 361 68.1
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 4.4e-147 525.0 359 67.1
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 4.9e-146 521.5 362 65.7
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 8.4e-146 520.8 365 66.0
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.4e-145 520.0 358 68.2
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.4e-145 520.0 365 66.0
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 2.4e-145 519.2 359 66.9
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 3.5e-144 515.4 360 66.7
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.0e-144 514.6 366 65.6
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 1.7e-143 513.1 364 64.8
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.3e-143 512.7 356 64.3
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 3.0e-143 512.3 360 68.6
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.1e-142 510.4 363 64.2
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 1.5e-142 510.0 359 65.2
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 1.9e-142 509.6 350 68.0
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 2.5e-142 509.2 340 68.5
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 2.5e-142 509.2 365 65.8
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 3.3e-142 508.8 344 66.0
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 5.6e-142 508.1 365 64.4
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 5.6e-142 508.1 346 65.6
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 7.3e-142 507.7 362 64.6
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 7.3e-142 507.7 358 64.0
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.1e-141 506.1 358 64.0
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.1e-141 504.2 362 64.9
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.1e-141 504.2 362 64.9
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 4.0e-140 501.9 358 64.2
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.0e-140 500.7 362 64.4
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 9.0e-140 500.7 360 61.9
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 1.2e-139 500.4 361 65.4
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.5e-139 500.0 342 67.3
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.5e-139 500.0 362 63.5
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.6e-139 499.2 366 64.5
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 4.5e-139 498.4 351 64.4
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 7.6e-139 497.7 363 63.9
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.3e-138 496.9 359 65.2
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 2.2e-138 496.1 454 54.2
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 8.4e-138 494.2 366 63.4
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 2.4e-137 492.7 367 62.4
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.2e-137 492.3 366 61.5
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 3.0e-135 485.7 344 64.0
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 5.1e-135 485.0 344 63.4
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 6.7e-135 484.6 408 58.8
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 6.7e-135 484.6 337 64.1
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.1e-134 483.8 365 61.1
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.5e-134 483.4 344 63.4
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 1.9e-134 483.0 347 62.0
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 2.5e-134 482.6 357 62.5
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 2.5e-134 482.6 366 61.2
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 3.3e-134 482.3 349 63.0
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 3.3e-134 482.3 319 67.7
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 5.6e-134 481.5 346 66.2
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 5.6e-134 481.5 350 62.0
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 5.6e-134 481.5 319 67.7
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 7.4e-134 481.1 350 63.7
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.3e-133 480.3 365 60.8
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.6e-133 479.9 344 62.8
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 2.1e-133 479.6 320 66.9
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 2.8e-133 479.2 342 63.5
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 3.7e-133 478.8 342 63.2
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 3.7e-133 478.8 319 67.4
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.1e-132 477.2 342 63.5
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.1e-132 477.2 352 62.2
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.8e-132 476.5 342 63.2
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.8e-132 476.5 342 63.2
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.8e-132 476.5 367 59.9
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 2.4e-132 476.1 344 62.5
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 6.9e-132 474.6 364 59.6
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 6.9e-132 474.6 360 60.6
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.5e-131 471.9 366 60.7
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 5.8e-131 471.5 423 54.1
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 5.8e-131 471.5 311 67.8
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 7.6e-131 471.1 370 58.9
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 1.7e-130 469.9 345 61.7
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 2.2e-130 469.5 366 60.1
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 2.9e-130 469.2 350 64.9
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.1e-129 467.2 346 61.0
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.4e-129 466.8 350 61.4
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.9e-129 466.5 352 61.1
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.9e-129 466.5 352 60.5
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.6e-128 463.4 352 60.8
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.6e-128 463.4 355 62.3
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.6e-128 463.4 352 60.5
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 2.1e-128 463.0 316 67.4
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 2.7e-128 462.6 355 62.3
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 2.0e-123 446.4 355 57.2
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 2.9e-122 442.6 334 59.0
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 8.4e-122 441.0 342 57.6
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 1.4e-121 440.3 315 67.0
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.9e-121 439.9 339 63.7
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.1e-118 430.6 359 60.4
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 7.7e-115 417.9 292 65.4
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.1e-113 414.1 344 56.4
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 4.6e-112 408.7 235 77.9
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-110 404.1 276 65.2
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 2.5e-110 402.9 276 64.9
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 2.2e-109 399.8 276 64.5
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 3.8e-106 389.0 315 62.9
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 8.5e-106 387.9 338 55.0
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 1.1e-102 377.5 250 66.0
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.3e-101 374.0 287 61.7
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 2.7e-96 356.3 247 64.8
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.0e-87 325.9 231 64.1
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.8e-87 324.7 229 65.1
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.8e-84 317.0 251 60.2
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 3.2e-81 306.2 337 45.7
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.7e-80 303.1 313 50.5
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.7e-80 303.1 266 55.3
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.4e-76 290.8 204 64.2
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 5.9e-75 285.4 362 41.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 2.9e-74 283.1 221 58.4
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.9e-73 280.4 362 41.4
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.0e-71 274.6 304 44.4
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.0e-71 274.6 156 76.3
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 2.3e-71 273.5 363 40.5
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.2e-70 271.2 200 64.0
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 6.6e-66 255.4 190 61.6
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 9.8e-62 241.5 201 56.2
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.7e-58 230.7 156 68.6
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 2.0e-54 217.2 271 43.9
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.1e-52 211.5 159 59.7
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 2.3e-47 193.7 238 43.7
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 5.1e-34 149.4 97 73.2
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.5e-30 137.9 99 61.6
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.0e-30 137.5 100 64.0
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 2.6e-30 137.1 232 39.2
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.9e-29 133.7 109 58.7
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 5.5e-20 102.8 94 43.6
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 2.9e-13 80.5 106 34.9
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 6.9e-07 59.3 58 48.3


User provided reference genes

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