Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 9.7e-182 640.2 363 100.0
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.3e-89 332.8 346 61.0
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 9.6e-89 331.3 342 59.6
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 6.2e-88 328.6 346 63.9
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 6.2e-88 328.6 346 63.9
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 6.0e-83 312.0 265 74.0
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 2.3e-82 310.1 346 59.2
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 5.8e-78 295.4 359 53.2
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.7e-77 293.9 359 54.3
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 6.5e-77 292.0 347 55.3
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 4.6e-75 285.8 353 55.0
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 2.5e-73 280.0 356 52.0
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 5.7e-73 278.9 354 53.1
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 5.7e-73 278.9 356 51.7
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.4e-66 257.7 379 50.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.8e-66 257.3 374 48.9
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.1e-65 254.6 369 46.9
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 2.8e-64 250.0 368 47.3
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 3.7e-64 249.6 367 48.0
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 4.8e-64 249.2 373 47.7
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 4.8e-64 249.2 345 49.3
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 3.1e-63 246.5 359 47.1
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 6.9e-63 245.4 369 45.3
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 9.1e-63 245.0 379 46.2
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.5e-62 244.2 369 45.0
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 3.4e-62 243.0 372 47.0
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.5e-62 242.7 369 44.7
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 5.9e-62 242.3 379 45.4
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.7e-61 240.7 375 45.6
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 5.0e-61 239.2 370 46.2
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 5.0e-61 239.2 365 48.8
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 6.5e-61 238.8 370 44.9
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.4e-60 237.7 370 45.7
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 2.5e-60 236.9 367 49.0
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 3.2e-60 236.5 369 45.5
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 4.2e-60 236.1 368 44.8
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.5e-60 235.7 372 44.1
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 5.5e-60 235.7 367 45.0
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 5.5e-60 235.7 367 45.0
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.6e-59 234.2 358 47.5
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.1e-59 233.8 371 44.2
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 7.9e-59 231.9 355 45.1
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.4e-58 231.1 355 46.8
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.8e-58 230.7 363 47.4
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 2.3e-58 230.3 370 47.3
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 3.0e-58 229.9 359 44.6
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 3.9e-58 229.6 369 43.6
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.9e-58 229.6 369 43.6
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.6e-57 226.9 373 43.7
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 4.4e-57 226.1 371 43.4
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 4.4e-57 226.1 362 44.2
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 5.7e-57 225.7 370 43.8
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 7.4e-57 225.3 377 45.1
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 7.4e-57 225.3 377 45.1
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 9.7e-57 224.9 374 46.5
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.3e-56 224.6 372 42.7
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 2.2e-56 223.8 355 44.2
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 3.7e-56 223.0 369 45.5
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.4e-55 221.1 380 47.6
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.4e-55 221.1 371 44.2
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 1.8e-55 220.7 357 44.0
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 2.4e-55 220.3 370 43.2
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 5.3e-55 219.2 374 44.1
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 7.0e-55 218.8 370 43.8
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 2.0e-54 217.2 367 43.3
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 2.6e-54 216.9 345 45.5
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 3.5e-54 216.5 354 44.1
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 4.5e-54 216.1 377 44.3
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.3e-53 214.5 359 47.6
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 3.8e-53 213.0 367 44.1
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 5.0e-53 212.6 349 43.8
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 5.0e-53 212.6 349 43.8
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 5.0e-53 212.6 367 43.3
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 8.5e-53 211.8 350 42.6
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 1.4e-52 211.1 372 44.1
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 1.9e-52 210.7 370 42.7
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 2.5e-52 210.3 366 45.1
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.2e-52 209.9 372 41.9
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 4.2e-52 209.5 356 45.5
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 9.4e-52 208.4 361 44.9
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 2.1e-51 207.2 343 42.9
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 2.1e-51 207.2 343 42.9
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.1e-51 207.2 373 44.8
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 3.6e-51 206.5 373 44.5
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 4.7e-51 206.1 345 43.8
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 8.0e-51 205.3 363 42.4
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 8.0e-51 205.3 375 42.4
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 8.0e-51 205.3 375 42.4
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.0e-50 204.9 354 42.9
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.1e-49 201.4 361 43.8
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.5e-49 201.1 365 46.6
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 4.4e-49 199.5 350 44.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 7.4e-49 198.7 390 40.8
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 7.4e-49 198.7 349 45.6
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 7.4e-49 198.7 370 43.8
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.2e-48 197.2 341 42.2
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 2.2e-48 197.2 374 42.2
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 4.8e-48 196.1 347 40.9
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 8.2e-48 195.3 366 41.3
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 7.0e-47 192.2 378 38.6
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 7.0e-47 192.2 354 40.4
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 3.5e-46 189.9 374 39.6
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 4.5e-46 189.5 355 40.8
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 3.8e-45 186.4 376 40.7
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 6.5e-45 185.7 327 42.8
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 3.0e-42 176.8 368 39.9
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 4.0e-42 176.4 373 39.1
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 2.0e-41 174.1 356 39.9
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 2.8e-40 170.2 371 37.2
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 3.7e-40 169.9 375 39.2
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 8.3e-40 168.7 378 37.3
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.8e-37 159.8 371 37.7
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 9.4e-36 155.2 373 37.5
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 8.0e-35 152.1 316 38.0
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.8e-34 151.0 293 43.7
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.3e-34 150.6 376 35.4
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.2e-33 148.3 284 45.4
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 7.5e-33 145.6 313 43.1
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 2.8e-32 143.7 335 35.2
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.4e-31 141.4 120 66.7
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 1.7e-29 134.4 354 36.7
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 4.2e-28 129.8 357 34.2
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 9.5e-28 128.6 328 33.8
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 2.0e-25 120.9 171 47.4
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 5.7e-25 119.4 186 42.5
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 9.8e-25 118.6 375 32.5
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.3e-24 118.2 220 44.5
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 3.7e-24 116.7 366 33.1
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 4.9e-24 116.3 99 65.7
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.1e-23 115.2 338 34.3
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.0e-22 110.9 331 34.1
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.1e-20 105.1 161 42.9
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.2e-19 101.7 325 31.7
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.0e-17 94.4 348 29.3
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 6.4e-16 89.4 99 49.5
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 2.7e-14 84.0 435 26.2
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 3.0e-13 80.5 132 41.7
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 3.0e-13 80.5 341 29.0
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.0e-13 80.5 86 55.8
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 2.5e-12 77.4 352 27.6
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.1e-10 72.0 69 55.1
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 2.3e-10 70.9 148 34.5
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 8.9e-10 68.9 202 38.1
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.9e-08 63.9 118 44.9
MSTRG.10449 Avicennia marina HOM05D004638 ORTHO05D005443 6.4e-08 62.8 100 44.0
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 6.4e-08 62.8 62 54.8
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 2.4e-07 60.8 62 53.2
Nitab4.5_0000047g0210 Nicotiana tabacum HOM05D004638 ORTHO05D005443 9.2e-07 58.9 97 44.3


User provided reference genes

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