Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 6.1e-52 207.2 106 100.0
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 4.3e-37 157.9 105 73.3
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 9.5e-37 156.8 107 75.7
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 3.6e-36 154.8 105 72.4
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.8e-35 152.5 98 75.5
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 5.2e-35 151.0 107 67.3
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 5.2e-35 151.0 105 73.3
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 6.8e-35 150.6 105 73.3
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.5e-34 149.4 106 71.7
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 2.0e-34 149.1 104 73.1
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 2.0e-34 149.1 104 72.1
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 2.6e-34 148.7 105 69.5
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 3.4e-34 148.3 105 70.5
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 5.7e-34 147.5 106 70.8
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 5.7e-34 147.5 107 67.3
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 5.7e-34 147.5 104 71.2
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.3e-33 146.4 98 73.5
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.7e-33 146.0 107 67.3
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.2e-33 145.6 103 71.8
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.2e-33 145.6 105 66.7
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 2.9e-33 145.2 105 71.4
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 2.9e-33 145.2 105 67.6
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 2.9e-33 145.2 106 70.8
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 3.7e-33 144.8 107 68.2
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 3.7e-33 144.8 107 68.2
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.9e-33 144.4 103 70.9
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 4.9e-33 144.4 103 70.9
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 6.4e-33 144.1 90 75.6
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 8.3e-33 143.7 106 71.7
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.1e-32 143.3 105 71.4
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.1e-32 143.3 104 69.2
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.4e-32 142.9 107 72.0
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.4e-32 142.9 105 65.7
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.4e-32 142.9 90 75.6
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.8e-32 142.5 105 65.7
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.8e-32 142.5 105 65.7
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 2.4e-32 142.1 125 60.0
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 2.4e-32 142.1 102 68.6
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 3.2e-32 141.7 106 66.0
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.2e-32 141.7 106 66.0
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.2e-32 141.7 106 66.0
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 3.2e-32 141.7 105 62.9
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 3.2e-32 141.7 102 67.6
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 4.1e-32 141.4 105 64.8
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.1e-32 141.4 105 67.6
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 5.4e-32 141.0 105 64.8
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 7.0e-32 140.6 102 65.7
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 7.0e-32 140.6 106 65.1
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.2e-31 139.8 106 65.1
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.2e-31 139.8 106 65.1
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.2e-31 139.8 93 72.0
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 2.0e-31 139.0 104 66.3
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 2.0e-31 139.0 105 65.7
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.0e-31 139.0 99 69.7
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.7e-31 138.7 126 61.1
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 3.5e-31 138.3 105 65.7
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 3.5e-31 138.3 99 65.7
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 4.6e-31 137.9 107 66.4
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.6e-31 137.9 106 65.1
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 64.2
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 1.3e-30 136.3 105 63.8
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 1.7e-30 136.0 106 67.9
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 1.7e-30 136.0 114 62.3
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.7e-30 136.0 105 62.9
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 2.3e-30 135.6 106 67.0
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 5.0e-30 134.4 102 65.7
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 5.0e-30 134.4 105 61.0
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 6.6e-30 134.0 105 62.9
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 8.6e-30 133.7 105 62.9
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 8.6e-30 133.7 105 64.8
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 8.6e-30 133.7 94 67.0
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.1e-29 133.3 93 68.8
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.5e-29 132.9 93 74.2
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.9e-29 132.5 106 64.2
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 1.9e-29 132.5 91 71.4
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 2.5e-29 132.1 105 62.9
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.5e-29 132.1 94 69.1
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 3.3e-29 131.7 87 67.8
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 3.3e-29 131.7 99 65.7
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 4.3e-29 131.3 106 65.1
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 4.3e-29 131.3 105 65.7
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.6e-29 131.0 105 60.0
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 7.3e-29 130.6 105 59.0
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 7.3e-29 130.6 100 68.0
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 9.5e-29 130.2 97 67.0
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 9.5e-29 130.2 119 58.8
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 9.5e-29 130.2 105 64.8
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 1.2e-28 129.8 87 66.7
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.2e-28 129.8 100 68.0
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.2e-28 129.8 106 59.4
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 1.6e-28 129.4 87 67.8
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 1.6e-28 129.4 87 67.8
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 1.6e-28 129.4 87 67.8
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.1e-28 129.0 101 67.3
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 3.6e-28 128.3 87 66.7
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 3.6e-28 128.3 87 65.5
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 3.6e-28 128.3 87 66.7
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 3.6e-28 128.3 106 60.4
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 6.2e-28 127.5 96 62.5
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 8.0e-28 127.1 106 64.2
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.0e-27 126.7 106 58.5
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 1.0e-27 126.7 82 68.3
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 1.0e-27 126.7 106 58.5
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.4e-27 126.3 89 66.3
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.4e-27 126.3 105 56.2
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.8e-27 125.9 93 62.4
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.3e-27 125.6 106 58.5
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 3.1e-27 125.2 87 64.4
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 4.0e-27 124.8 87 65.5
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 6.8e-27 124.0 103 61.2
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 6.8e-27 124.0 103 61.2
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 6.8e-27 124.0 84 72.6
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.2e-26 123.2 106 63.2
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.5e-26 122.9 90 64.4
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.5e-26 122.9 106 58.5
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.0e-26 122.5 106 57.5
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 7.5e-26 120.6 107 62.6
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.7e-25 118.2 90 62.2
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 4.9e-25 117.9 91 62.6
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 6.4e-25 117.5 93 60.2
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.4e-24 116.3 103 55.3
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 4.1e-24 114.8 107 57.0
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 5.4e-24 114.4 87 62.1
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 5.4e-24 114.4 105 54.3
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 5.4e-24 114.4 105 54.3
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 2.7e-23 112.1 105 53.3
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 4.6e-23 111.3 106 56.6
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 3.9e-22 108.2 73 74.0
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 1.1e-21 106.7 101 53.5
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.1e-19 100.1 65 75.4
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.8e-19 99.4 100 51.0
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 3.1e-19 98.6 74 70.3
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 6.8e-19 97.4 73 68.5
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 5.8e-18 94.4 73 63.0
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 1.7e-17 92.8 64 68.8
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 3.2e-16 88.6 92 48.9
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.2e-15 86.7 76 64.5
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.7e-15 85.5 63 68.3
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 6.0e-15 84.3 83 51.8
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.0e-14 83.6 58 70.7
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.0e-14 83.6 82 52.4
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 3.9e-14 81.6 74 59.5
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 9.5e-13 77.0 74 60.8
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.6e-12 76.3 70 64.3
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 1.4e-08 63.2 67 49.3
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 3.2e-08 62.0 75 48.0
Solyc11g065610.1 Solanum lycopersicum HOM05D005271 ORTHO05D006072 3.0e-06 55.5 37 67.6


User provided reference genes

Program Settings