Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 8.4e-127 457.6 341 100.0
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 8.1e-106 387.9 341 87.1
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 3.1e-89 332.8 322 77.0
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 5.3e-89 332.0 315 74.9
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 2.0e-88 330.1 315 83.5
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 7.6e-88 328.2 337 76.9
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 3.8e-87 325.9 321 75.4
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 5.0e-87 325.5 321 75.1
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.0e-84 317.8 333 76.9
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.3e-84 317.4 341 79.2
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 2.3e-84 316.6 318 73.0
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 5.1e-84 315.5 341 78.9
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 8.7e-84 314.7 327 74.6
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 1.1e-83 314.3 337 78.0
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 1.1e-83 314.3 341 77.7
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.5e-83 313.9 341 77.7
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 2.5e-83 313.2 320 73.4
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 3.3e-83 312.8 311 83.3
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 1.3e-82 310.8 340 75.0
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.3e-82 310.8 341 73.3
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.6e-82 310.5 341 77.7
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 2.2e-82 310.1 341 75.1
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 3.7e-82 309.3 320 78.8
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 4.8e-82 308.9 331 79.2
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 4.8e-82 308.9 319 71.8
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 6.3e-82 308.5 329 71.1
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 6.3e-82 308.5 329 71.1
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.2e-82 308.1 320 78.4
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 2.4e-81 306.6 323 77.7
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.1e-81 306.2 318 78.6
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.1e-81 306.2 318 78.6
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.1e-81 306.2 330 76.4
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 4.1e-81 305.8 314 69.4
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 5.3e-81 305.4 334 77.5
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 6.9e-81 305.1 340 77.1
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.2e-80 304.3 329 78.4
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.5e-80 303.9 318 64.2
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 3.4e-80 302.8 325 77.8
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 7.7e-80 301.6 321 62.6
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.0e-79 301.2 323 77.1
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 1.7e-79 300.4 316 71.2
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 3.8e-79 299.3 341 67.4
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 5.0e-79 298.9 316 79.1
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 8.5e-79 298.1 341 72.1
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.1e-78 297.7 330 71.2
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.1e-78 297.7 336 73.2
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 1.4e-78 297.4 319 72.1
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 1.4e-78 297.4 331 72.5
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.4e-78 297.4 318 77.7
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 1.9e-78 297.0 327 70.0
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.9e-78 297.0 334 69.8
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 2.5e-78 296.6 324 65.7
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 4.2e-78 295.8 322 62.1
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 5.5e-78 295.4 320 69.4
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 5.5e-78 295.4 339 74.9
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 9.4e-78 294.7 327 70.9
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 9.4e-78 294.7 336 71.7
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.6e-77 293.9 323 78.6
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 2.7e-77 293.1 314 70.4
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 2.7e-77 293.1 330 71.2
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 2.7e-77 293.1 321 69.5
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 2.7e-77 293.1 319 69.0
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 3.6e-77 292.7 353 58.4
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 6.1e-77 292.0 310 78.7
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 3.9e-76 289.3 318 76.4
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 3.9e-76 289.3 327 69.4
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 6.7e-76 288.5 319 70.8
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 8.8e-76 288.1 327 69.4
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 8.8e-76 288.1 327 68.8
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.0e-75 287.0 318 76.1
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.0e-75 287.0 318 76.1
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 3.3e-75 286.2 335 65.4
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 4.4e-75 285.8 303 74.3
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 5.7e-75 285.4 318 69.2
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 7.4e-75 285.0 323 70.0
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 2.8e-74 283.1 321 62.0
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 4.8e-74 282.3 334 70.1
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 8.2e-74 281.6 332 69.3
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 1.1e-73 281.2 322 69.3
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-73 280.8 326 68.7
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-73 280.8 326 68.7
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 1.8e-73 280.4 330 72.4
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 2.4e-73 280.0 325 76.6
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 6.9e-73 278.5 319 73.7
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 2.6e-72 276.6 329 66.9
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 4.5e-72 275.8 332 62.0
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.3e-71 274.2 328 65.9
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 3.8e-71 272.7 309 77.0
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.8e-71 272.7 333 72.1
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 5.0e-71 272.3 341 68.3
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 8.5e-71 271.6 316 62.7
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 8.5e-71 271.6 316 62.7
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.1e-70 271.2 327 74.9
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 1.9e-70 270.4 323 66.9
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 2.5e-70 270.0 345 64.1
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.6e-69 267.3 314 75.2
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.6e-69 266.2 308 78.2
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.7e-69 265.8 314 77.4
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.4e-68 264.2 315 77.5
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 3.0e-68 263.1 305 78.7
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.3e-67 259.6 318 68.6
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 5.7e-67 258.8 311 60.1
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.3e-66 257.7 295 73.6
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.2e-66 256.9 300 77.3
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.7e-63 247.3 315 69.2
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.1e-61 240.4 320 59.1
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 3.6e-61 239.6 248 67.3
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-60 237.7 300 66.3
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.5e-59 234.2 235 66.4
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.4e-57 226.9 352 52.0
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 2.0e-56 223.8 319 57.1
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 2.0e-56 223.8 319 57.7
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.0e-55 221.5 171 70.8
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.9e-55 219.9 315 56.8
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 9.4e-54 214.9 327 59.6
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.0e-52 211.5 217 58.1
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 6.8e-52 208.8 332 56.9
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 8.8e-52 208.4 216 63.0
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-51 207.6 217 73.7
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-47 194.9 174 69.0
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 1.7e-47 194.1 308 61.7
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 2.9e-47 193.4 194 62.9
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 8.5e-47 191.8 308 65.6
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.9e-46 190.7 174 57.5
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 2.5e-46 190.3 174 57.5
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 3.2e-46 189.9 170 62.4
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 4.0e-44 183.0 319 50.2
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 5.2e-44 182.6 317 56.5
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.0e-43 180.6 121 76.9
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-43 180.3 174 63.2
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 6.3e-42 175.6 133 70.7
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 2.4e-41 173.7 183 74.3
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 4.1e-41 172.9 212 87.3
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.3e-39 167.9 134 65.7
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-36 157.5 185 56.2
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 3.0e-36 156.8 185 61.1
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 4.0e-36 156.4 326 43.9
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 6.8e-36 155.6 325 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 8.9e-36 155.2 322 46.3
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-35 154.5 148 56.8
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.5e-35 154.5 133 60.9
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 9.2e-33 145.2 217 47.5
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.3e-31 140.6 156 59.0
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 3.9e-31 139.8 154 55.2
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.1e-29 134.0 207 75.4
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 2.8e-29 133.7 152 57.9
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 7.5e-27 125.6 157 58.6
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 6.4e-26 122.5 174 50.0
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 4.1e-25 119.8 151 64.2
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.5e-22 111.3 183 73.2
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 3.3e-22 110.2 146 47.3
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.3e-22 110.2 94 63.8
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.5e-22 108.6 94 63.8
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.5e-22 108.6 94 63.8
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.8e-19 99.4 87 62.1
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.5e-16 90.1 76 61.8
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 4.6e-16 89.7 96 53.1
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 1.5e-14 84.7 67 62.7
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.2e-13 81.6 106 49.1
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 2.1e-13 80.9 96 47.9
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 4.0e-12 76.6 102 46.1
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 9.9e-11 72.0 162 34.0
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.4e-09 68.2 53 62.3
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 2.4e-09 67.4 47 63.8
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 6.0e-08 62.8 86 47.7
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-06 58.2 62 50.0
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 9.6e-06 55.5 163 53.4


User provided reference genes

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