Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 4.5e-39 164.1 80 100.0
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 2.5e-21 105.1 81 64.2
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 1.6e-20 102.4 80 63.8
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.9e-19 97.8 78 61.5
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.7e-17 92.4 84 54.8
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 2.2e-17 92.0 85 56.5
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 6.3e-17 90.5 79 62.0
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.4e-16 89.4 79 58.2
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.4e-16 89.4 83 56.6
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.8e-16 89.0 91 58.2
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.4e-16 88.6 80 55.0
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.4e-16 88.6 80 55.0
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 4.1e-16 87.8 83 55.4
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 7.0e-16 87.0 82 57.3
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 9.1e-16 86.7 84 57.1
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.6e-15 85.1 84 57.1
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.6e-15 85.1 84 57.1
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.6e-15 85.1 84 57.1
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.6e-15 85.1 92 52.2
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 5.9e-15 84.0 81 55.6
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.0e-14 83.2 84 56.0
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.2e-14 82.0 83 55.4
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 2.9e-14 81.6 81 50.6
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 2.9e-14 81.6 81 50.6
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 3.8e-14 81.3 85 54.1
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 5.0e-14 80.9 82 57.3
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 1.1e-13 79.7 83 51.8
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 1.5e-13 79.3 78 56.4
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.5e-13 79.3 83 51.8
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 1.5e-13 79.3 88 51.1
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 2.5e-13 78.6 84 54.8
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.2e-13 78.2 83 50.6
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.2e-13 78.2 83 51.8
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 3.2e-13 78.2 79 50.6
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 3.2e-13 78.2 75 52.0
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 5.5e-13 77.4 84 51.2
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 5.5e-13 77.4 80 58.8
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 7.2e-13 77.0 71 57.7
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 7.2e-13 77.0 77 49.4
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 9.4e-13 76.6 86 51.2
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 9.4e-13 76.6 71 57.7
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.2e-12 76.3 81 54.3
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 1.6e-12 75.9 79 51.9
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.1e-12 75.5 81 54.3
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 2.1e-12 75.5 81 54.3
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.1e-12 75.5 83 53.0
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.7e-12 75.1 81 53.1
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 2.7e-12 75.1 83 53.0
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 3.6e-12 74.7 90 48.9
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 4.7e-12 74.3 85 49.4
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 4.7e-12 74.3 85 49.4
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 6.1e-12 73.9 77 48.1
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 1.0e-11 73.2 81 53.1
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 1.0e-11 73.2 81 48.1
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 1.4e-11 72.8 80 48.8
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 1.4e-11 72.8 82 51.2
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.4e-11 72.8 77 50.6
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 1.4e-11 72.8 83 48.2
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 1.8e-11 72.4 74 50.0
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.8e-11 72.4 84 45.2
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.8e-11 72.4 81 54.3
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.3e-11 72.0 83 48.2
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.3e-11 72.0 74 47.3
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.3e-11 72.0 81 50.6
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 4.0e-11 71.2 80 50.0
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 4.0e-11 71.2 73 49.3
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 5.2e-11 70.9 85 45.9
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 5.2e-11 70.9 88 45.5
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 5.2e-11 70.9 81 49.4
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.1e-10 69.7 81 48.1
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.5e-10 69.3 76 47.4
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.5e-10 69.3 71 53.5
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.5e-10 69.3 72 51.4
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 2.0e-10 68.9 82 51.2
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.0e-10 68.9 82 48.8
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.6e-10 68.6 79 49.4
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.3e-10 68.2 77 50.6
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 4.4e-10 67.8 76 46.1
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 4.4e-10 67.8 75 53.3
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 7.5e-10 67.0 82 45.1
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 9.7e-10 66.6 91 44.0
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 9.7e-10 66.6 86 48.8
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 9.7e-10 66.6 85 45.9
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 9.7e-10 66.6 84 47.6
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 1.7e-09 65.9 82 42.7
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.7e-09 65.9 74 47.3
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 1.7e-09 65.9 84 46.4
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 2.2e-09 65.5 89 42.7
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 2.8e-09 65.1 88 42.0
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 2.8e-09 65.1 88 42.0
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 2.8e-09 65.1 72 48.6
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.8e-09 65.1 86 46.5
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 3.7e-09 64.7 82 40.2
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 3.7e-09 64.7 89 41.6
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 4.8e-09 64.3 82 43.9
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 4.8e-09 64.3 88 45.5
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 6.3e-09 63.9 74 50.0
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 6.3e-09 63.9 74 45.9
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 8.2e-09 63.5 72 47.2
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 8.2e-09 63.5 72 47.2
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 1.1e-08 63.2 74 45.9
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 1.1e-08 63.2 74 45.9
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 1.1e-08 63.2 83 45.8
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.1e-08 63.2 69 52.2
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.1e-08 63.2 90 41.1
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-08 63.2 72 47.2
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 1.1e-08 63.2 77 45.5
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 1.4e-08 62.8 74 48.6
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 1.4e-08 62.8 77 44.2
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 1.4e-08 62.8 82 43.9
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.8e-08 62.4 74 44.6
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.8e-08 62.4 76 46.1
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 2.4e-08 62.0 72 45.8
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 2.4e-08 62.0 80 45.0
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 3.1e-08 61.6 81 40.7
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 3.1e-08 61.6 77 44.2
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 4.1e-08 61.2 77 41.6
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 4.1e-08 61.2 83 42.2
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 4.1e-08 61.2 83 43.4
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 4.1e-08 61.2 83 43.4
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 5.3e-08 60.8 54 51.9
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 5.3e-08 60.8 83 43.4
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.3e-08 60.8 74 51.4
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 5.3e-08 60.8 90 40.0
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 9.1e-08 60.1 75 44.0
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 1.2e-07 59.7 74 45.9
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.2e-07 59.7 82 43.9
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 1.2e-07 59.7 78 42.3
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 1.6e-07 59.3 81 45.7
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.6e-07 59.3 79 44.3
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.0e-07 58.9 90 44.4
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 2.7e-07 58.5 54 50.0
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 3.5e-07 58.2 80 41.2
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.5e-07 58.2 83 43.4
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 5.9e-07 57.4 70 45.7
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 7.7e-07 57.0 81 42.0
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 7.7e-07 57.0 68 41.2
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 1.3e-06 56.2 68 44.1
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 2.2e-06 55.5 77 41.6
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.9e-06 55.1 51 52.9
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.9e-06 55.1 78 41.0
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 6.5e-06 53.9 72 44.4
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 8.5e-06 53.5 82 40.2
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 8.5e-06 53.5 83 41.0
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 8.5e-06 53.5 70 42.9


User provided reference genes

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