Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu017573.1 Olea europaea HOM05D003637 ORTHO05D004175 1.2e-248 862.8 467 100.0
Oeu019452.1 Olea europaea HOM05D003637 ORTHO05D004175 1.8e-204 716.1 441 87.1
MSTRG.13350 Avicennia marina HOM05D003637 ORTHO05D004175 2.1e-128 463.4 454 61.7
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 6.9e-124 448.4 454 58.6
SalBow8G3371 Salvia bowleyana HOM05D003637 ORTHO05D004175 1.1e-110 404.4 454 55.3
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 5.7e-110 402.1 453 55.0
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 3.8e-106 389.4 455 55.2
Solyc01g102800.3 Solanum lycopersicum HOM05D003637 ORTHO05D004175 1.5e-105 387.5 464 54.7
Sopen01g045200 Solanum pennellii HOM05D003637 ORTHO05D004175 1.6e-104 384.0 458 55.0
PGSC0003DMG400018260 Solanum tuberosum HOM05D003637 ORTHO05D004175 3.4e-102 376.3 463 53.6
Nitab4.5_0001497g0160 Nicotiana tabacum HOM05D003637 ORTHO05D004175 7.0e-92 342.0 461 50.3
CAN.G1379.10 Capsicum annuum HOM05D003637 ORTHO05D004175 2.0e-91 340.5 491 48.5
vmacro18730 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 2.0e-91 340.5 489 47.6
Nitab4.5_0003246g0090 Nicotiana tabacum HOM05D003637 ORTHO05D004175 2.3e-90 337.0 457 50.3
Nitab4.5_0000110g0370 Nicotiana tabacum HOM05D003637 ORTHO05D004175 2.1e-88 330.5 461 49.9
Cc04_g00120 Coffea canephora HOM05D003637 ORTHO05D004175 3.6e-88 329.7 458 48.3
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 1.8e-87 327.4 460 46.5
Peaxi162Scf00194g01048 Petunia axillaris HOM05D003637 ORTHO05D004175 2.3e-87 327.0 454 48.0
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 4.0e-87 326.2 487 47.2
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 7.5e-86 322.0 459 44.2
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 1.1e-84 318.2 460 44.8
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 3.2e-84 316.6 459 44.4
GSVIVG01036288001 Vitis vinifera HOM05D003637 ORTHO05D004175 2.3e-82 310.5 446 46.9
EL10Ac1g01273 Beta vulgaris HOM05D003637 ORTHO05D004175 2.9e-82 310.1 460 45.0
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 3.9e-82 309.7 462 43.5
Lj8A738T8 Lonicera japonica HOM05D003637 ORTHO05D004175 2.5e-81 307.0 459 46.2
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 1.4e-79 301.2 482 43.8
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 3.1e-79 300.1 451 43.2
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 3.1e-79 300.1 454 45.6
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 4.0e-79 299.7 463 41.3
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 5.2e-79 299.3 462 41.3
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 4.4e-78 296.2 457 43.8
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 2.2e-77 293.9 459 44.7
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 3.7e-77 293.1 459 44.7
Cpa.g.sc1431.2 Carica papaya HOM05D003637 ORTHO05D004175 3.7e-77 293.1 456 41.9
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 3.7e-77 293.1 472 44.1
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 6.4e-77 292.4 459 43.8
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 8.3e-77 292.0 461 44.3
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 1.9e-76 290.8 459 44.0
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 3.2e-76 290.0 463 41.0
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 1.6e-75 287.7 464 41.8
Cfa008076 Carpinus fangiana HOM05D003637 ORTHO05D004175 3.5e-75 286.6 452 41.6
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 6.0e-75 285.8 461 43.6
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 8.6e-74 282.0 457 42.0
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 1.9e-73 280.8 452 41.2
Haze_13959 Corylus avellana HOM05D003637 ORTHO05D004175 1.9e-73 280.8 456 41.9
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 1.9e-73 280.8 462 41.8
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 1.9e-73 280.8 462 41.8
CiPaw.03G014200 Carya illinoinensis HOM05D003637 ORTHO05D004175 4.3e-73 279.6 455 41.1
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 4.3e-73 279.6 448 44.2
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 1.6e-72 277.7 465 40.4
Nn3g21609 Nelumbo nucifera HOM05D003637 ORTHO05D004175 2.8e-72 276.9 484 42.1
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 4.0e-71 273.1 455 42.6
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 8.9e-71 271.9 455 43.3
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 2.0e-70 270.8 458 42.6
Haze_10275 Corylus avellana HOM05D003637 ORTHO05D004175 2.0e-70 270.8 441 41.3
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.0e-70 270.8 454 42.1
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.6e-70 270.4 455 43.1
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 3.4e-70 270.0 460 41.7
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 7.5e-70 268.9 458 42.4
MD10G1004600 Malus domestica HOM05D003637 ORTHO05D004175 9.8e-70 268.5 460 42.0
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 6.4e-69 265.8 444 42.1
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 1.9e-68 264.2 455 39.3
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 2.4e-68 263.8 461 41.9
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 3.2e-68 263.5 458 39.7
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 4.1e-68 263.1 454 40.5
BolC1t05898H Brassica oleracea HOM05D003637 ORTHO05D004175 5.4e-68 262.7 458 40.2
PSO063G3025 Papaver somniferum HOM05D003637 ORTHO05D004175 5.4e-68 262.7 488 41.2
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 9.2e-68 261.9 445 41.6
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 3.5e-67 260.0 467 42.0
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 3.5e-67 260.0 460 40.0
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 3.5e-67 260.0 454 41.9
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 7.8e-67 258.8 470 39.6
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 1.3e-66 258.1 452 41.2
AT3G02760 Arabidopsis thaliana HOM05D003637 ORTHO05D004175 1.7e-66 257.7 470 39.6
DCAR_014239 Daucus carota HOM05D003637 ORTHO05D004175 1.7e-66 257.7 474 42.8
BcaNung05408 Brassica carinata HOM05D003637 ORTHO05D004175 2.3e-66 257.3 458 39.5
AL3G12170 Arabidopsis lyrata HOM05D003637 ORTHO05D004175 3.0e-66 256.9 468 39.3
PSO782G5164 Papaver somniferum HOM05D003637 ORTHO05D004175 3.0e-66 256.9 487 41.1
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 6.6e-66 255.8 455 40.9
HanXRQChr07g0194841 Helianthus annuus HOM05D003637 ORTHO05D004175 6.6e-66 255.8 464 40.3
Lsat_1_v5_gn_2_108061 Lactuca sativa HOM05D003637 ORTHO05D004175 6.6e-66 255.8 465 43.2
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 7.3e-65 252.3 467 39.2
BNapus_Darmor_BZH_scaffold_122p00030 Brassica napus HOM05D003637 ORTHO05D004175 3.6e-64 250.0 458 39.5
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 3.6e-64 250.0 482 39.6
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 8.1e-64 248.8 463 42.3
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 1.4e-63 248.1 480 38.1
SHI17420 Sapria himalayana HOM05D003637 ORTHO05D004175 3.1e-63 246.9 463 37.6
Sp3g01790 Schrenkiella parvula HOM05D003637 ORTHO05D004175 8.9e-63 245.4 468 38.0
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 1.2e-62 245.0 461 39.5
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 1.3e-61 241.5 468 38.0
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 2.9e-61 240.4 484 37.6
TPR.G8734 Trifolium pratense HOM05D003637 ORTHO05D004175 2.9e-61 240.4 454 39.9
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.6e-59 234.6 457 38.3
A03p33090 Brassica napus HOM05D003637 ORTHO05D004175 4.6e-59 233.0 463 38.4
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 7.8e-59 232.3 458 39.3
BraA03t12479Z Brassica rapa HOM05D003637 ORTHO05D004175 2.3e-58 230.7 462 38.7
Medtr1g057860 Medicago truncatula HOM05D003637 ORTHO05D004175 8.6e-58 228.8 454 38.3
C03p40270 Brassica napus HOM05D003637 ORTHO05D004175 2.5e-57 227.3 464 37.7
Psat6g083160 Pisum sativum HOM05D003637 ORTHO05D004175 2.5e-57 227.3 454 38.5
BolC3t16292H Brassica oleracea HOM05D003637 ORTHO05D004175 1.2e-56 224.9 464 37.5
BcaB04g19390 Brassica carinata HOM05D003637 ORTHO05D004175 2.4e-55 220.7 462 37.0
Lsat_1_v5_gn_3_107861 Lactuca sativa HOM05D003637 ORTHO05D004175 7.6e-54 215.7 425 40.7
Lsat_1_v5_gn_8_62500 Lactuca sativa HOM05D003637 ORTHO05D004175 2.9e-53 213.8 467 39.6
Thhalv10001912m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 3.2e-52 210.3 452 37.8
PSO513G0157 Papaver somniferum HOM05D003637 ORTHO05D004175 1.5e-49 201.4 478 34.5
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 4.3e-49 199.9 326 42.6
Aa31LG11G13210 Aethionema arabicum HOM05D003637 ORTHO05D004175 7.3e-49 199.1 405 35.8
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 9.6e-49 198.7 326 42.6
BcaB04g21398 Brassica carinata HOM05D003637 ORTHO05D004175 1.3e-48 198.4 445 35.7
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 4.8e-48 196.4 326 42.6
ATR1136G178 Amborella trichopoda HOM05D003637 ORTHO05D004175 6.2e-48 196.1 510 33.7
Thecc.05G195900 Theobroma cacao HOM05D003637 ORTHO05D004175 6.2e-48 196.1 335 41.2
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 1.5e-46 191.4 326 41.7
Lsat_1_v5_gn_1_27560 Lactuca sativa HOM05D003637 ORTHO05D004175 4.9e-45 186.4 344 41.9
PGR083G1739 Punica granatum HOM05D003637 ORTHO05D004175 4.9e-45 186.4 458 34.1
PSO210G5637 Papaver somniferum HOM05D003637 ORTHO05D004175 8.4e-45 185.7 470 33.2
CDE10G0800 Ceratophyllum demersum HOM05D003637 ORTHO05D004175 1.1e-44 185.3 484 33.7
Duzib106G1310 Durio zibethinus HOM05D003637 ORTHO05D004175 1.1e-44 185.3 326 40.2
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 9.3e-44 182.2 322 38.5
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 2.7e-43 180.6 322 39.4
Zm00001eb354240 Zea mays HOM05D003637 ORTHO05D004175 1.3e-42 178.3 469 33.5
Zm00001eb267790 Zea mays HOM05D003637 ORTHO05D004175 1.1e-41 175.3 468 33.3
SEGI_15544 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 2.1e-40 171.0 518 31.9
FAN14G4419 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.9e-37 160.6 299 41.8
BNapus_Darmor_BZH_scaffold_99p00040 Brassica napus HOM05D003637 ORTHO05D004175 1.2e-35 155.2 253 42.7
Os05g0150900 Oryza sativa ssp. japonica HOM05D003637 ORTHO05D004175 1.6e-35 154.8 405 34.1
HPP92_000900 Vanilla planifolia HOM05D003637 ORTHO05D004175 1.1e-31 142.1 400 31.0
COL.COLO4_20337 Corchorus olitorius HOM05D003637 ORTHO05D004175 1.5e-30 138.3 240 41.2
Lsat_1_v5_gn_3_57620 Lactuca sativa HOM05D003637 ORTHO05D004175 2.9e-29 134.0 340 35.6
Lsat_1_v5_gn_7_60281 Lactuca sativa HOM05D003637 ORTHO05D004175 5.5e-28 129.8 279 38.7
HanXRQChr01g0009581 Helianthus annuus HOM05D003637 ORTHO05D004175 1.0e-26 125.6 278 40.3
SEGI_40078 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 4.8e-24 116.7 338 30.5
Nitab4.5_0002446g0080 Nicotiana tabacum HOM05D003637 ORTHO05D004175 3.8e-21 107.1 170 41.2
Mapoly0125s0016 Marchantia polymorpha HOM05D003637 ORTHO05D004175 4.6e-19 100.1 382 29.1
Nitab4.5_0002446g0110 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.5e-17 95.1 104 54.8
TAR374G0972 Trochodendron aralioides HOM05D003637 ORTHO05D004175 3.4e-14 84.0 224 33.0
AagrBONN_evm.TU.Sc2ySwM_344.5308 Anthoceros agrestis HOM05D003637 ORTHO05D004175 8.5e-13 79.3 421 28.3
BraSC328t45965Z Brassica rapa HOM05D003637 ORTHO05D004175 7.2e-12 76.3 84 50.0
QL06p049632 Quercus lobata HOM05D003637 ORTHO05D004175 1.6e-11 75.1 166 40.4
BcaC06g34238 Brassica carinata HOM05D001392 ORTHO05D032327 1.1e-07 62.4 87 42.5
TAR374G0451 Trochodendron aralioides HOM05D003637 ORTHO05D004175 1.1e-07 62.4 79 49.4
CBR_g19630 Chara braunii HOM05D003637 ORTHO05D004175 1.4e-07 62.0 116 39.7
AagrBONN_evm.TU.Sc2ySwM_344.4290 Anthoceros agrestis HOM05D003637 ORTHO05D004175 5.3e-07 60.1 339 26.8
TPR.G5462 Trifolium pratense HOM05D011581 ORTHO05D004175 2.6e-06 57.8 130 34.6


User provided reference genes

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