Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.4e-165 586.3 312 100.0
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 2.5e-109 399.4 332 69.9
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 5.2e-107 391.7 333 70.3
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 6.5e-102 374.8 325 67.1
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 9.7e-98 360.9 341 64.8
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.7e-97 360.1 336 64.3
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.7e-97 359.0 329 65.3
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 3.7e-97 359.0 336 65.8
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.2e-97 357.8 356 60.7
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.1e-96 357.5 331 65.6
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.8e-96 356.7 356 60.7
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.8e-96 356.7 356 60.7
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 7.7e-95 351.3 330 63.6
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.3e-94 350.5 327 64.8
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.5e-93 347.1 361 60.1
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.9e-93 346.7 328 63.1
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.5e-93 345.1 331 63.7
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 9.4e-93 344.4 326 65.6
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.7e-92 342.0 391 57.0
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 8.0e-92 341.3 345 61.2
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 1.4e-91 340.5 334 62.6
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 8.8e-91 337.8 324 63.6
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.2e-90 337.4 333 61.9
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.0e-90 336.7 317 63.4
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 2.6e-90 336.3 332 62.0
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 3.4e-90 335.9 340 63.5
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 5.7e-90 335.1 325 60.3
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 5.7e-90 335.1 334 61.1
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 6.3e-89 331.6 368 58.4
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.1e-88 330.9 314 63.4
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.1e-88 330.9 345 61.2
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.4e-88 330.5 284 67.3
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.1e-88 328.9 333 60.4
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 5.4e-88 328.6 387 55.6
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.2e-87 327.4 381 56.4
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 3.5e-87 325.9 443 50.3
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.7e-86 323.6 343 60.1
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.9e-86 322.8 382 56.3
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 5.0e-86 322.0 326 61.3
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 7.2e-85 318.2 331 59.8
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 4.7e-84 315.5 330 60.0
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 6.1e-84 315.1 346 58.1
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 8.0e-84 314.7 345 58.3
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.0e-83 314.3 316 60.8
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 6.8e-83 311.6 438 49.5
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 4.4e-82 308.9 331 59.2
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.7e-81 307.0 350 57.1
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 8.3e-81 304.7 322 59.6
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 4.1e-80 302.4 469 45.8
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 5.4e-80 302.0 358 54.2
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.2e-79 300.8 347 56.8
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 3.5e-79 299.3 353 53.8
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.0e-78 297.7 345 56.8
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.0e-78 297.7 470 45.7
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 2.9e-78 296.2 356 56.2
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.9e-78 296.2 345 56.5
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 3.8e-78 295.8 335 57.9
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.1e-77 294.3 349 56.2
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.9e-77 293.5 321 58.9
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 5.6e-77 292.0 360 54.7
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 7.3e-77 291.6 347 58.2
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-76 290.4 260 66.2
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 6.1e-76 288.5 308 58.1
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.0e-75 286.2 333 57.7
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 3.0e-75 286.2 346 54.6
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 4.0e-75 285.8 342 56.4
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 6.8e-75 285.0 365 51.5
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 6.8e-75 285.0 339 56.3
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.5e-74 283.9 333 55.6
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 7.5e-74 281.6 350 55.1
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.5e-74 281.6 350 55.1
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 7.5e-74 281.6 368 52.2
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.7e-73 280.4 391 50.4
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 3.7e-73 279.3 357 53.5
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 6.4e-73 278.5 351 55.0
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.4e-72 277.3 336 54.8
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 7.0e-72 275.0 364 50.3
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.2e-71 274.2 338 52.4
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.2e-71 274.2 338 54.7
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 2.0e-71 273.5 349 53.0
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 6.6e-70 268.5 373 49.1
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.0e-67 261.2 386 51.8
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 5.2e-67 258.8 338 51.5
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.2e-66 257.7 335 53.7
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 9.8e-66 254.6 387 50.4
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 7.0e-64 248.4 276 58.3
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 9.2e-64 248.1 343 48.7
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.6e-63 247.3 332 52.1
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 7.8e-63 245.0 279 58.8
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.1e-61 241.1 411 46.2
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.9e-61 240.4 343 48.4
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 7.3e-61 238.4 425 43.3
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.2e-60 237.7 326 48.2
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 6.2e-60 235.3 453 41.7
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 6.8e-59 231.9 305 50.2
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.2e-58 231.1 422 42.4
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.5e-58 230.7 454 40.5
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 6.4e-57 225.3 458 40.8
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.4e-56 224.2 456 39.7
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.9e-56 223.8 420 40.5
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 2.4e-56 223.4 424 41.0
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 4.1e-56 222.6 342 46.2
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.2e-55 221.1 421 41.6
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 2.1e-55 220.3 426 39.0
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 2.1e-55 220.3 399 43.6
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 6.0e-55 218.8 342 45.3
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 7.8e-55 218.4 425 39.1
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 2.3e-54 216.9 421 40.4
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 2.3e-54 216.9 421 40.4
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.4e-51 207.6 341 48.1
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.7e-49 200.7 316 48.7
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.7e-49 200.7 370 43.5
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 2.2e-49 200.3 436 39.7
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.9e-49 199.1 318 46.5
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 4.1e-48 196.1 332 44.3
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 4.1e-48 196.1 451 39.7
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.9e-45 187.2 301 43.9
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 3.4e-42 176.4 319 44.2
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.8e-41 172.9 373 37.8
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 7.1e-40 168.7 335 43.0
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 1.5e-37 161.0 306 42.8
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 4.3e-37 159.5 390 39.0
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 1.6e-36 157.5 323 41.2
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 5.3e-35 152.5 329 38.6
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.1e-32 144.8 265 44.9
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.9e-32 144.1 368 35.1
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 3.9e-30 136.3 327 38.8
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 5.3e-27 125.9 227 42.3
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 9.6e-21 105.1 217 40.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.3e-17 94.7 98 58.2
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 5.5e-16 89.4 176 43.2
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.2e-15 88.2 79 63.3
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 4.6e-15 86.3 105 49.5
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 8.7e-14 82.0 97 56.7
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 5.7e-13 79.3 246 35.4
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.6e-12 77.8 99 45.5
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 4.2e-08 63.2 237 34.2
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.2e-07 61.6 52 63.5
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.6e-07 60.1 52 61.5
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.6e-07 60.1 52 61.5
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.6e-07 60.1 52 61.5
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.6e-07 60.1 52 61.5
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 3.6e-07 60.1 52 61.5
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.0e-06 58.5 52 59.6


User provided reference genes

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