Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 2241.5 1119 100.0
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1574.3 1099 70.7
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1564.3 1107 70.3
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1528.5 1109 68.9
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1467.6 1100 66.8
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1442.2 1098 65.3
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1433.7 1178 62.1
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1415.2 1107 63.7
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1398.6 1103 63.8
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1382.5 1131 63.0
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1369.4 1108 62.6
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1366.3 1108 62.5
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1359.4 1101 61.1
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1342.4 1109 61.2
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1334.7 1096 62.2
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1330.1 1096 61.5
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1327.0 1101 59.9
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1325.8 1110 60.9
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1323.9 1121 61.0
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1321.6 1111 59.7
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1319.7 1098 60.2
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1319.3 1110 59.8
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1317.0 1103 59.7
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1314.7 1089 60.5
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1314.3 1099 59.4
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1313.1 1085 60.2
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1301.6 1095 59.1
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1295.8 1095 59.5
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1289.2 1101 58.8
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1279.6 1187 56.3
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1278.8 1103 59.3
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1276.9 1100 58.5
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1276.2 1115 58.5
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1275.4 1101 59.3
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1273.5 1100 58.0
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1270.0 1099 59.5
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1264.6 1098 58.8
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1263.8 1092 57.1
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1262.3 1109 59.0
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1261.1 1182 55.7
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1259.2 1111 57.3
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1258.0 1108 58.0
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1256.5 1106 57.6
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1256.1 1099 57.8
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1254.6 1110 58.3
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1253.4 1104 57.3
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1252.3 1103 57.5
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1250.3 1108 57.5
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1247.6 1118 56.5
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1246.9 1110 57.4
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1246.5 1220 55.5
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1244.6 1101 57.5
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1241.9 1106 56.9
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1241.5 1114 57.4
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1240.7 1095 57.2
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1240.3 1066 58.5
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1239.6 1124 56.4
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1238.4 1093 56.8
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1237.2 1101 56.4
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1234.9 1110 56.8
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1234.9 1125 55.3
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1234.9 1118 56.3
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1229.9 1106 56.1
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1229.2 1105 56.9
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1228.4 1104 56.3
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1226.1 1131 56.4
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1225.3 1105 56.8
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1225.3 1100 56.0
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1218.8 1108 56.1
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1216.4 1100 56.5
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1215.3 1105 56.3
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1213.7 1105 56.2
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1213.4 1098 56.4
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1213.0 1111 55.6
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1212.6 1109 55.7
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1211.8 1105 55.9
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1211.1 1100 56.1
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1206.4 1104 55.7
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1195.6 1098 55.0
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1187.9 1123 55.4
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1181.8 1100 54.9
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1178.7 1082 55.5
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1171.8 1099 54.7
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1169.5 1101 56.1
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1139.0 1098 54.5
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1118.6 1104 53.1
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1117.1 1098 51.3
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1087.4 1080 52.7
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 9.2e-308 1060.4 1099 51.9
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 1.9e-305 1052.7 1076 50.4
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 3.4e-302 1042.0 885 59.3
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 8.4e-301 1037.3 1114 50.8
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 2.6e-286 989.2 914 54.7
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.6e-272 943.3 1076 46.7
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 4.2e-252 875.5 736 60.9
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 2.6e-249 866.3 972 49.9
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 2.7e-243 846.3 697 61.7
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 9.7e-241 837.8 907 49.6
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 3.7e-240 835.9 716 60.5
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 2.5e-236 823.2 680 59.4
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 5.5e-228 795.4 1119 40.8
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.9e-197 693.0 552 62.1
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 9.9e-193 678.3 549 61.6
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.9e-192 676.8 716 49.2
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 9.9e-185 651.7 865 43.8
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 4.2e-183 646.4 776 47.7
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 1.1e-175 621.7 882 39.5
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 8.7e-173 612.1 1046 36.4
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 9.6e-172 608.6 1093 36.8
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 7.1e-167 592.4 562 53.6
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.2e-155 554.3 895 36.5
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.4e-154 550.8 625 47.2
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 3.2e-151 540.4 482 56.0
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.4e-146 525.0 557 48.8
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 4.8e-139 500.0 383 64.0
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 6.3e-139 499.6 434 58.1
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.1e-122 443.7 356 62.1
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 2.2e-120 438.0 404 55.9
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.6e-110 405.2 498 45.0
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 2.7e-105 387.9 392 52.6
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.8e-102 377.9 873 30.8
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 2.6e-84 318.2 1159 26.7
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 1.9e-82 312.0 294 59.2
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 9.2e-82 309.7 262 59.5
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 5.3e-69 267.3 226 58.4
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.2e-65 256.1 312 45.8
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 3.0e-64 251.5 177 69.5
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 3.4e-60 238.0 406 37.4
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.3e-59 236.1 272 48.5
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 3.8e-59 234.6 541 32.9
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 3.5e-57 228.0 273 47.6
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 5.6e-55 220.7 208 52.4
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 5.8e-52 210.7 1034 24.2
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 1.6e-49 202.6 309 41.7
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 9.0e-45 186.8 1190 23.5
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.9e-43 181.8 152 49.3
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 1.2e-41 176.4 126 65.9
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 5.1e-40 171.0 212 46.7
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.9e-32 144.8 214 40.2
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.4e-29 136.3 332 31.3
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-29 136.0 102 61.8
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.7e-27 129.4 113 59.3
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 1.2e-25 123.2 86 69.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 4.4e-23 114.8 67 76.1
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 2.2e-22 112.5 103 54.4
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 1.4e-21 109.8 99 56.6
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.4e-21 109.8 154 44.8
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 7.7e-20 104.0 161 40.4
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 6.7e-16 90.9 70 61.4
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 9.7e-15 87.0 88 48.9
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.6e-12 79.7 70 58.6
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 1.0e-11 77.0 156 32.7
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-11 76.6 125 37.6
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 4.2e-10 71.6 89 44.9
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.6e-09 68.6 126 32.5
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.7e-06 59.7 45 62.2


User provided reference genes

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