Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016996.1 Olea europaea HOM05D000484 ORTHO05D000346 1.6e-25 118.6 58 100.0
Actinidia28921 Actinidia chinensis HOM05D000484 ORTHO05D000346 3.4e-12 74.3 77 55.8
Oeu056531.1 Olea europaea HOM05D000484 ORTHO05D000346 7.5e-12 73.2 78 55.1
Nitab4.5_0002373g0070 Nicotiana tabacum HOM05D000484 ORTHO05D000346 1.3e-11 72.4 77 50.6
Nitab4.5_0003314g0060 Nicotiana tabacum HOM05D000484 ORTHO05D000346 1.3e-11 72.4 77 50.6
Peaxi162Scf00435g01211 Petunia axillaris HOM05D000484 ORTHO05D000346 1.3e-11 72.4 77 50.6
CSS0011134 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 2.9e-11 71.2 77 51.9
CSS0050154 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 2.9e-11 71.2 77 51.9
Cc06_g04570 Coffea canephora HOM05D000484 ORTHO05D000346 4.9e-11 70.5 77 50.6
Solyc09g008480.4 Solanum lycopersicum HOM05D000484 ORTHO05D000346 4.9e-11 70.5 77 49.4
Sopen09g003310 Solanum pennellii HOM05D000484 ORTHO05D000346 4.9e-11 70.5 77 49.4
PGSC0003DMG401003899 Solanum tuberosum HOM05D000484 ORTHO05D000346 4.9e-11 70.5 77 49.4
Dinv35816 Davidia involucrata HOM05D000484 ORTHO05D000346 8.3e-11 69.7 73 56.2
CAN.G1038.15 Capsicum annuum HOM05D000484 ORTHO05D000346 1.4e-10 68.9 77 48.1
Sopen04g008690 Solanum pennellii HOM05D000484 ORTHO05D000346 1.4e-10 68.9 77 48.1
CSS0033192 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 1.9e-10 68.6 41 80.5
CSS0038983 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 1.9e-10 68.6 41 80.5
Gohir.D04G108600 Gossypium hirsutum HOM05D000484 ORTHO05D000346 3.2e-10 67.8 41 78.0
Gorai.009G412700 Gossypium raimondii HOM05D000484 ORTHO05D000346 3.2e-10 67.8 41 78.0
Solyc04g017620.4 Solanum lycopersicum HOM05D000484 ORTHO05D000346 3.2e-10 67.8 77 48.1
Lj2A117T95 Lonicera japonica HOM05D000484 ORTHO05D000346 4.1e-10 67.4 77 48.1
TWI74G0361 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 4.1e-10 67.4 41 78.0
CiPaw.09G002800 Carya illinoinensis HOM05D000484 ORTHO05D000346 5.4e-10 67.0 77 49.4
Lj3C990G18 Lonicera japonica HOM05D000484 ORTHO05D000346 5.4e-10 67.0 77 48.1
QL07p042195 Quercus lobata HOM05D000484 ORTHO05D000346 5.4e-10 67.0 77 50.6
QL07p042226 Quercus lobata HOM05D000484 ORTHO05D000346 5.4e-10 67.0 77 50.6
TAR623G0397 Trochodendron aralioides HOM05D000484 ORTHO05D000346 5.4e-10 67.0 77 49.4
Duzib106G0652 Durio zibethinus HOM05D000484 ORTHO05D000346 7.1e-10 66.6 41 75.6
Nn2g13864 Nelumbo nucifera HOM05D000484 ORTHO05D000346 7.1e-10 66.6 77 48.1
SGA_v2.0_scaffold40G15469 Striga asiatica HOM05D000484 ORTHO05D000346 7.1e-10 66.6 77 48.1
Thecc.05G071700 Theobroma cacao HOM05D000484 ORTHO05D000346 7.1e-10 66.6 41 75.6
Thecc.05G072000 Theobroma cacao HOM05D000484 ORTHO05D000346 7.1e-10 66.6 41 75.6
MSTRG.5778 Avicennia marina HOM05D000484 ORTHO05D000346 9.2e-10 66.2 41 73.2
CSS0030292 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 9.2e-10 66.2 41 78.0
Cpa.g.sc5.160 Carica papaya HOM05D000484 ORTHO05D000346 9.2e-10 66.2 41 75.6
COL.COLO4_26908 Corchorus olitorius HOM05D000484 ORTHO05D000346 9.2e-10 66.2 41 75.6
Duzib093G0318 Durio zibethinus HOM05D000484 ORTHO05D000346 9.2e-10 66.2 41 73.2
Hma1.2p1_0547F.1_g176510 Hydrangea macrophylla HOM05D000484 ORTHO05D000346 9.2e-10 66.2 41 75.6
Sed0005248 Sechium edule HOM05D000484 ORTHO05D000346 9.2e-10 66.2 49 73.5
SGA_v2.0_scaffold224G42930 Striga asiatica HOM05D000484 ORTHO05D000346 9.2e-10 66.2 77 49.4
TWI77G0783 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 9.2e-10 66.2 41 75.6
AUR62043426 Chenopodium quinoa HOM05D000484 ORTHO05D000346 1.2e-09 65.9 41 75.6
Migut.J00457 Erythranthe guttata HOM05D000484 ORTHO05D000346 1.2e-09 65.9 77 48.1
Gohir.A01G212200 Gossypium hirsutum HOM05D000484 ORTHO05D000346 1.2e-09 65.9 41 73.2
Psat6g075800 Pisum sativum HOM05D000484 ORTHO05D000346 1.2e-09 65.9 77 49.4
HanXRQChr07g0186211 Helianthus annuus HOM05D000484 ORTHO05D000346 1.6e-09 65.5 41 70.7
FAN09G1819 Fragaria x ananassa HOM05D000484 ORTHO05D000346 2.1e-09 65.1 41 73.2
Lalb_Chr21g0315111 Lupinus albus HOM05D000484 ORTHO05D000346 2.1e-09 65.1 41 73.2
Potri.006G121200 Populus trichocarpa HOM05D000484 ORTHO05D000346 2.1e-09 65.1 41 73.2
Sabra06G0095400 Salix brachista HOM05D000484 ORTHO05D000346 2.1e-09 65.1 41 73.2
CARHR283640 Cardamine hirsuta HOM05D000484 ORTHO05D000346 2.7e-09 64.7 42 69.0
Gohir.D01G200900 Gossypium hirsutum HOM05D000484 ORTHO05D000346 2.7e-09 64.7 41 70.7
Gorai.002G245600 Gossypium raimondii HOM05D000484 ORTHO05D000346 2.7e-09 64.7 41 70.7
HanXRQChr13g0400701 Helianthus annuus HOM05D000484 ORTHO05D000346 2.7e-09 64.7 41 70.7
Lsat_1_v5_gn_6_28461 Lactuca sativa HOM05D000484 ORTHO05D000346 2.7e-09 64.7 41 68.3
Medtr1g062740 Medicago truncatula HOM05D000484 ORTHO05D000346 2.7e-09 64.7 77 48.1
Nn6g35214 Nelumbo nucifera HOM05D000484 ORTHO05D000346 2.7e-09 64.7 76 48.7
Nitab4.5_0000527g0090 Nicotiana tabacum HOM05D000484 ORTHO05D000346 2.7e-09 64.7 41 73.2
TPR.G21002 Trifolium pratense HOM05D000484 ORTHO05D000346 2.7e-09 64.7 77 48.1
EL10Ac7g16689 Beta vulgaris HOM05D000484 ORTHO05D000346 3.5e-09 64.3 41 70.7
Ciclev10011083m.g Citrus clementina HOM05D000484 ORTHO05D000346 3.5e-09 64.3 41 70.7
PSO339G5360 Papaver somniferum HOM05D000484 ORTHO05D000346 3.5e-09 64.3 41 75.6
PSO801G0700 Papaver somniferum HOM05D000484 ORTHO05D000346 3.5e-09 64.3 41 75.6
SalBow3G0649 Salvia bowleyana HOM05D000484 ORTHO05D000346 3.5e-09 64.3 41 70.7
Sed0025646 Sechium edule HOM05D000484 ORTHO05D000346 3.5e-09 64.3 49 71.4
HPP92_020823 Vanilla planifolia HOM05D000484 ORTHO05D000346 3.5e-09 64.3 76 46.1
arahy.Tifrunner.gnm1.ann1.063DHX Arachis hypogaea HOM05D000484 ORTHO05D000346 4.6e-09 63.9 41 70.7
arahy.Tifrunner.gnm1.ann1.R4D1TU Arachis hypogaea HOM05D000484 ORTHO05D000346 4.6e-09 63.9 41 70.7
CAN.G501.8 Capsicum annuum HOM05D000484 ORTHO05D000346 4.6e-09 63.9 76 44.7
AUR62026951 Chenopodium quinoa HOM05D000484 ORTHO05D000346 4.6e-09 63.9 41 73.2
Glyma.10G060000 Glycine max HOM05D000484 ORTHO05D000346 4.6e-09 63.9 41 73.2
Gohir.A04G070100 Gossypium hirsutum HOM05D000484 ORTHO05D000346 4.6e-09 63.9 37 81.1
Phvul.007G152000 Phaseolus vulgaris HOM05D000484 ORTHO05D000346 4.6e-09 63.9 41 73.2
VMungo0720G1209 Vigna mungo HOM05D000484 ORTHO05D000346 4.6e-09 63.9 41 73.2
VMungo1383G3162 Vigna mungo HOM05D000484 ORTHO05D000346 4.6e-09 63.9 41 70.7
CANSAT80G1000 Cannabis sativa HOM05D000484 ORTHO05D000346 6.0e-09 63.5 41 70.7
Cfa021475 Carpinus fangiana HOM05D000484 ORTHO05D000346 6.0e-09 63.5 77 48.1
ClCG10G019860 Citrullus lanatus HOM05D000484 ORTHO05D000346 6.0e-09 63.5 46 73.9
Haze_19438 Corylus avellana HOM05D000484 ORTHO05D000346 6.0e-09 63.5 77 48.1
FvH4_6g16890 Fragaria vesca HOM05D000484 ORTHO05D000346 6.0e-09 63.5 41 70.7
FAN02G2726 Fragaria x ananassa HOM05D000484 ORTHO05D000346 6.0e-09 63.5 41 70.7
FAN05G1985 Fragaria x ananassa HOM05D000484 ORTHO05D000346 6.0e-09 63.5 41 70.7
FAN05G5258 Fragaria x ananassa HOM05D000484 ORTHO05D000346 6.0e-09 63.5 41 70.7
Glyma.13G146700 Glycine max HOM05D000484 ORTHO05D000346 6.0e-09 63.5 41 73.2
Rhsim03G0089000 Rhododendron simsii HOM05D000484 ORTHO05D000346 6.0e-09 63.5 41 70.7
RcHm_v2.0_Chr3g0470911 Rosa chinensis HOM05D000484 ORTHO05D000346 6.0e-09 63.5 41 70.7
GSVIVG01033689001 Vitis vinifera HOM05D000484 ORTHO05D000346 6.0e-09 63.5 41 70.7
arahy.Tifrunner.gnm1.ann1.F8G62F Arachis hypogaea HOM05D000484 ORTHO05D000346 7.8e-09 63.2 41 73.2
arahy.Tifrunner.gnm1.ann1.YDD7G1 Arachis hypogaea HOM05D000484 ORTHO05D000346 7.8e-09 63.2 41 73.2
Dinv37342 Davidia involucrata HOM05D000484 ORTHO05D000346 7.8e-09 63.2 41 70.7
Peaxi162Scf00407g00625 Petunia axillaris HOM05D000484 ORTHO05D000346 7.8e-09 63.2 77 45.5
Solyc10g086320.2 Solanum lycopersicum HOM05D000484 ORTHO05D000346 7.8e-09 63.2 77 44.2
Sopen10g035700 Solanum pennellii HOM05D000484 ORTHO05D000346 7.8e-09 63.2 77 44.2
Ca_06429_v3 Cicer arietinum L. HOM05D000484 ORTHO05D000346 1.0e-08 62.8 41 70.7
Nitab4.5_0000349g0060 Nicotiana tabacum HOM05D000484 ORTHO05D000346 1.0e-08 62.8 41 70.7
PGR004G2655 Punica granatum HOM05D000484 ORTHO05D000346 1.0e-08 62.8 41 70.7
Migut.L01722 Erythranthe guttata HOM05D000484 ORTHO05D000346 1.3e-08 62.4 81 45.7
Glyma.03G186300 Glycine max HOM05D000484 ORTHO05D000346 1.3e-08 62.4 41 68.3
Atru.chr8.1746 Acer truncatum HOM05D000484 ORTHO05D000346 1.7e-08 62.0 41 63.4
AL3G21180 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 1.7e-08 62.0 41 68.3
AT3G09920 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 1.7e-08 62.0 41 68.3
Carub.0003s0902 Capsella rubella HOM05D000484 ORTHO05D000346 1.7e-08 62.0 41 68.3
Thhalv10020082m.g Eutrema salsugineum HOM05D000484 ORTHO05D000346 1.7e-08 62.0 41 68.3
Sp3g08270 Schrenkiella parvula HOM05D000484 ORTHO05D000346 1.7e-08 62.0 41 68.3
Lj5g0002009 Lotus japonicus HOM05D000484 ORTHO05D000346 2.3e-08 61.6 41 65.9
Lalb_Chr01g0018581 Lupinus albus HOM05D000484 ORTHO05D000346 2.3e-08 61.6 41 68.3
Phvul.001G181400 Phaseolus vulgaris HOM05D000484 ORTHO05D000346 2.3e-08 61.6 41 68.3
Aqoxy2G01649 Aquilegia oxysepala HOM05D000484 ORTHO05D000346 3.9e-08 60.8 41 65.9
CDE02G1482 Ceratophyllum demersum HOM05D000484 ORTHO05D000346 3.9e-08 60.8 41 68.3
MELO3C009382.2 Cucumis melo HOM05D000484 ORTHO05D000346 3.9e-08 60.8 36 80.6
Eucgr.A01618 Eucalyptus grandis HOM05D000484 ORTHO05D000346 3.9e-08 60.8 41 68.3
Lj1g0011172 Lotus japonicus HOM05D000484 ORTHO05D000346 3.9e-08 60.8 41 65.9
Lalb_Chr25g0288871 Lupinus albus HOM05D000484 ORTHO05D000346 3.9e-08 60.8 41 65.9
DCAR_015010 Daucus carota HOM05D000484 ORTHO05D000346 6.6e-08 60.1 77 42.9
MD04G1088700 Malus domestica HOM05D000484 ORTHO05D000346 6.6e-08 60.1 41 65.9
MD12G1106400 Malus domestica HOM05D000484 ORTHO05D000346 6.6e-08 60.1 41 65.9
Os02g0822500 Oryza sativa ssp. japonica HOM05D000484 ORTHO05D000346 6.6e-08 60.1 41 65.9
CsaV3_3G036240 Cucumis sativus L. HOM05D000484 ORTHO05D000346 8.6e-08 59.7 36 77.8
Prupe.7G125200 Prunus persica HOM05D000484 ORTHO05D000346 8.6e-08 59.7 41 65.9
unitig_8.g4335 Utricularia gibba HOM05D000484 ORTHO05D000346 8.6e-08 59.7 41 65.9
BcaC05g29506 Brassica carinata HOM05D000484 ORTHO05D000346 1.1e-07 59.3 41 65.9
A05p39120 Brassica napus HOM05D000484 ORTHO05D000346 1.1e-07 59.3 41 65.9
C05p58140 Brassica napus HOM05D000484 ORTHO05D000346 1.1e-07 59.3 41 65.9
BolC5t34470H Brassica oleracea HOM05D000484 ORTHO05D000346 1.1e-07 59.3 41 65.9
BraA05t22701Z Brassica rapa HOM05D000484 ORTHO05D000346 1.1e-07 59.3 41 65.9
THA.LOC104816362 Tarenaya hassleriana HOM05D000484 ORTHO05D000346 1.5e-07 58.9 41 65.9
Zm00001eb220840 Zea mays HOM05D000484 ORTHO05D000346 1.9e-07 58.5 41 65.9
Aa31LG3G2400 Aethionema arabicum HOM05D000484 ORTHO05D000346 3.3e-07 57.8 41 65.9
BcaC05g29719 Brassica carinata HOM05D000484 ORTHO05D000346 3.3e-07 57.8 41 63.4
Zm00001eb044280 Zea mays HOM05D000484 ORTHO05D000346 4.3e-07 57.4 41 65.9
MSTRG.26676 Avicennia marina HOM05D000484 ORTHO05D000346 7.3e-07 56.6 80 43.8
ATR0105G004 Amborella trichopoda HOM05D000484 ORTHO05D000346 9.5e-07 56.2 41 63.4
Mapoly0140s0029 Marchantia polymorpha HOM05D000484 ORTHO05D000346 2.8e-06 54.7 42 57.1
ATR0121G015 Amborella trichopoda HOM05D000484 ORTHO05D000346 4.7e-06 53.9 41 56.1
Oeu008896.1 Olea europaea HOM05D000484 ORTHO05D000346 4.7e-06 53.9 41 56.1
PGSC0003DMG400023793 Solanum tuberosum HOM05D000484 ORTHO05D000346 6.2e-06 53.5 41 53.7
MBI06_g33556_MAGBIO Magnolia biondii HOM05D000484 ORTHO05D000346 8.1e-06 53.1 41 53.7


User provided reference genes

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