Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 5.5e-184 647.5 331 100.0
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.1e-88 330.9 237 68.8
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 3.8e-84 315.8 231 68.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 4.2e-83 312.4 236 68.2
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 3.6e-82 309.3 220 69.5
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 4.4e-80 302.4 256 63.7
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 5.3e-78 295.4 259 63.7
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 7.0e-78 295.0 237 65.0
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 4.5e-77 292.4 204 76.0
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.3e-76 290.8 214 69.2
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.0e-76 288.9 241 61.8
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 6.5e-76 288.5 235 63.4
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 8.5e-76 288.1 214 68.2
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 8.5e-76 288.1 242 61.6
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.5e-75 287.3 241 60.2
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.5e-75 287.3 254 58.7
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.9e-75 287.0 228 64.0
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 5.5e-75 285.4 249 66.7
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 9.4e-75 284.6 214 66.8
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 9.4e-75 284.6 228 64.9
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 2.1e-74 283.5 206 73.3
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 8.0e-74 281.6 216 69.9
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 8.0e-74 281.6 203 69.0
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.0e-73 281.2 217 66.4
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.4e-73 280.8 219 69.4
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.8e-73 280.4 208 72.1
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.3e-73 280.0 217 68.2
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 6.7e-73 278.5 216 67.1
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.1e-72 277.7 243 58.4
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.1e-72 277.7 243 58.4
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.5e-72 277.3 216 69.0
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.6e-72 276.6 230 60.4
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.7e-72 275.4 216 68.5
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.3e-71 274.2 234 63.2
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.7e-71 272.7 209 65.1
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 8.2e-71 271.6 237 59.9
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 8.2e-71 271.6 241 63.1
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.1e-70 271.2 256 57.8
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.1e-70 271.2 229 61.1
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.8e-70 270.4 237 61.2
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.8e-70 270.4 234 59.4
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 4.1e-70 269.2 217 63.6
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 5.3e-70 268.9 218 61.0
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 7.0e-70 268.5 206 68.0
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.2e-69 267.7 207 67.1
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.6e-69 267.3 202 63.4
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 2.7e-69 266.5 215 64.7
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 4.5e-69 265.8 216 65.3
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 4.5e-69 265.8 205 70.2
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.9e-69 265.4 238 62.6
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 5.9e-69 265.4 220 60.5
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.0e-68 264.6 238 62.6
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 3.8e-68 262.7 215 67.0
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.0e-68 262.3 238 61.8
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 5.5e-67 258.8 218 67.4
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 7.2e-67 258.5 207 67.1
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 7.2e-67 258.5 199 61.8
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 9.4e-67 258.1 224 65.2
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.6e-66 257.3 185 70.8
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 2.1e-66 256.9 220 62.7
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.7e-66 256.5 210 62.9
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.7e-66 255.8 265 57.0
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 6.1e-66 255.4 237 57.8
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 1.4e-65 254.2 215 60.5
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.4e-65 254.2 217 59.4
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.4e-65 254.2 216 64.8
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 3.0e-65 253.1 237 57.4
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.2e-64 251.1 204 68.1
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 3.4e-64 249.6 257 55.3
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 9.8e-64 248.1 251 58.6
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.8e-63 246.5 275 56.0
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 6.3e-63 245.4 225 60.0
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 6.3e-63 245.4 209 66.0
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 8.3e-63 245.0 215 60.5
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.1e-62 244.6 223 61.0
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 9.1e-62 241.5 222 60.8
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 7.7e-61 238.4 260 54.6
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 7.7e-61 238.4 214 66.8
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 7.7e-61 238.4 257 51.4
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 5.0e-60 235.7 205 66.3
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.0e-60 235.7 242 57.0
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.2e-59 233.0 242 56.2
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 3.2e-59 233.0 175 68.6
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.2e-59 232.6 216 58.3
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 7.2e-59 231.9 234 56.4
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 7.2e-59 231.9 242 50.4
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 7.2e-59 231.9 223 57.8
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.7e-58 229.9 222 56.8
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 3.6e-58 229.6 206 57.3
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 8.0e-58 228.4 174 66.7
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 2.0e-56 223.8 215 57.2
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 2.0e-56 223.8 215 57.2
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.4e-56 223.0 225 56.9
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.2e-55 220.3 217 62.7
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.2e-55 220.3 244 54.5
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 3.7e-55 219.5 201 57.7
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 3.7e-55 219.5 225 57.3
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 8.3e-55 218.4 225 61.8
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 1.2e-53 214.5 195 59.5
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.0e-53 213.8 175 62.9
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 5.9e-53 212.2 209 54.5
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 7.7e-53 211.8 219 53.4
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.0e-52 211.5 175 68.0
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 8.6e-52 208.4 225 52.9
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 2.5e-51 206.8 225 51.1
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 2.5e-51 206.8 214 52.8
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 5.6e-51 205.7 224 50.4
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 5.6e-51 205.7 224 50.4
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 5.6e-51 205.7 225 51.1
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 5.6e-51 205.7 225 51.1
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.2e-50 204.5 194 60.8
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 6.1e-50 202.2 257 50.6
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 8.0e-50 201.8 206 53.4
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 3.0e-49 199.9 258 50.8
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 4.0e-49 199.5 248 52.4
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 5.2e-49 199.1 236 54.2
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 8.9e-49 198.4 235 53.2
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 3.4e-48 196.4 237 52.7
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 4.4e-48 196.1 161 59.6
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.8e-46 190.7 236 47.5
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 9.2e-46 188.3 165 64.8
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 2.0e-45 187.2 161 62.7
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.3e-44 183.7 219 46.1
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.9e-43 180.6 224 46.4
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 9.5e-43 178.3 206 50.5
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.0e-41 174.9 197 49.7
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 5.2e-41 172.6 146 57.5
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 5.2e-41 172.6 176 54.5
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.5e-40 171.0 150 66.0
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.0e-40 170.6 137 67.2
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.4e-40 169.9 173 50.9
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 2.2e-39 167.2 217 47.0
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.9e-38 164.1 203 49.3
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 9.2e-38 161.8 175 52.6
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 3.9e-36 156.4 138 63.8
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 8.6e-36 155.2 137 62.8
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.5e-35 153.7 111 59.5
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 9.5e-35 151.8 195 45.6
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 4.7e-34 149.4 221 41.2
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.3e-33 147.1 138 71.0
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.4e-30 137.9 129 55.8
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 7.1e-30 135.6 131 58.8
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 2.7e-29 133.7 191 41.4
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.5e-29 133.3 92 66.3
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 6.0e-29 132.5 153 60.1
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.5e-27 127.9 147 61.2
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.5e-27 127.9 131 51.1
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.6e-27 125.9 76 69.7
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 7.3e-27 125.6 158 53.8
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 5.2e-25 119.4 63 76.2
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 6.4e-23 112.5 236 41.5
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 2.4e-22 110.5 200 39.0
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 5.4e-22 109.4 74 64.9
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.0e-20 105.1 148 58.1
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 3.9e-20 103.2 159 39.0
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 2.8e-18 97.1 74 55.4
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 4.7e-18 96.3 102 54.9
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 6.2e-18 95.9 102 63.7
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 6.2e-18 95.9 134 48.5
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 6.9e-17 92.4 102 53.9
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 4.9e-15 86.3 106 40.6
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 7.8e-13 79.0 106 56.6
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.1e-11 75.1 48 64.6
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.6e-08 63.9 65 46.2
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 3.4e-08 63.5 92 41.3
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 4.9e-07 59.7 62 40.3
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 1.1e-06 58.5 41 65.9
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.4e-06 58.2 28 89.3
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 1.9e-06 57.8 47 51.1
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 4.2e-06 56.6 47 46.8


User provided reference genes

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