Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 7.7e-121 437.2 224 100.0
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 1.0e-80 303.9 239 65.7
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 6.6e-80 301.2 241 66.8
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 2.5e-79 299.3 235 68.5
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 7.3e-79 297.7 228 68.9
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 5.2e-77 291.6 243 66.7
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 6.8e-77 291.2 243 65.0
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 5.8e-76 288.1 241 63.1
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 6.4e-75 284.6 241 63.5
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 1.9e-74 283.1 236 63.1
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 4.1e-74 282.0 234 65.8
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.6e-73 280.0 242 61.2
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.6e-73 280.0 234 65.4
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 2.7e-73 279.3 241 61.8
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 3.5e-73 278.9 232 63.4
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 4.6e-73 278.5 242 61.2
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 7.8e-73 277.7 241 61.0
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 1.0e-72 277.3 240 62.5
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 3.9e-72 275.4 243 60.9
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 3.9e-72 275.4 234 64.1
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 3.9e-72 275.4 241 59.3
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 8.6e-72 274.2 239 61.5
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 2.5e-71 272.7 234 59.8
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 2.5e-71 272.7 248 59.3
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 5.6e-71 271.6 244 59.0
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 5.6e-71 271.6 244 59.0
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 5.6e-71 271.6 237 62.4
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 9.5e-71 270.8 242 59.5
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 9.5e-71 270.8 242 60.3
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 1.6e-70 270.0 245 58.8
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 1.6e-70 270.0 241 60.2
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 2.1e-70 269.6 237 61.2
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.1e-70 269.6 242 60.3
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 2.8e-70 269.2 245 60.4
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 3.6e-70 268.9 231 63.6
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.7e-70 268.5 235 62.6
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 6.2e-70 268.1 235 63.0
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 8.1e-70 267.7 246 59.3
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.4e-69 266.9 242 59.5
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.8e-69 266.5 240 59.6
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 1.8e-69 266.5 239 59.0
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.8e-69 266.5 225 62.2
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 3.1e-69 265.8 241 59.8
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 4.0e-69 265.4 242 57.9
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 8.9e-69 264.2 240 58.8
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.2e-68 263.8 238 58.4
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 1.5e-68 263.5 240 60.4
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 2.0e-68 263.1 238 59.7
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 3.4e-68 262.3 224 63.8
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 4.4e-68 261.9 242 58.7
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 5.8e-68 261.5 237 59.9
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 5.8e-68 261.5 237 59.9
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 9.8e-68 260.8 242 57.4
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.7e-67 260.0 242 57.4
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.7e-67 260.0 240 59.2
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 2.2e-67 259.6 238 58.8
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 2.9e-67 259.2 243 58.0
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 3.7e-67 258.8 245 58.4
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 6.4e-67 258.1 251 57.8
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.1e-66 257.3 243 57.6
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 1.4e-66 256.9 242 58.7
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 2.4e-66 256.1 232 59.5
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 2.4e-66 256.1 232 59.5
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 3.2e-66 255.8 239 58.6
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 3.2e-66 255.8 232 59.5
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 3.2e-66 255.8 232 59.5
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 3.2e-66 255.8 232 59.9
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 3.2e-66 255.8 239 58.6
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 4.1e-66 255.4 232 59.5
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 4.1e-66 255.4 235 57.9
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 9.2e-66 254.2 232 59.1
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 9.2e-66 254.2 232 58.6
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 2.1e-65 253.1 232 58.6
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 2.1e-65 253.1 238 58.4
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 2.7e-65 252.7 232 58.6
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 4.6e-65 251.9 241 56.8
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 7.8e-65 251.1 240 58.3
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 1.0e-64 250.8 241 56.0
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 1.0e-64 250.8 241 57.7
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 1.3e-64 250.4 232 58.2
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 2.3e-64 249.6 241 60.2
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.3e-64 249.6 237 56.5
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.3e-64 249.6 237 56.5
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 3.9e-64 248.8 232 58.2
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 3.9e-64 248.8 241 55.6
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 8.6e-64 247.7 237 55.7
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 8.6e-64 247.7 232 56.0
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 1.9e-63 246.5 231 58.0
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 1.9e-63 246.5 231 58.0
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 1.9e-63 246.5 240 56.2
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 5.6e-63 245.0 233 56.7
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 5.6e-63 245.0 231 57.6
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 3.6e-62 242.3 242 54.1
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.1e-61 240.7 241 54.8
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 1.4e-61 240.4 231 56.7
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 2.3e-61 239.6 240 54.2
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 5.2e-61 238.4 242 54.5
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 2.6e-60 236.1 222 56.8
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 6.4e-59 231.5 229 55.0
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.4e-58 229.6 250 51.6
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 3.2e-58 229.2 222 55.9
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 9.2e-58 227.6 241 53.9
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.6e-57 226.9 245 53.5
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 2.7e-57 226.1 242 53.7
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 4.6e-57 225.3 226 54.9
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 1.0e-56 224.2 234 54.3
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 5.1e-56 221.9 226 53.5
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 8.6e-56 221.1 205 59.0
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 1.9e-55 219.9 237 52.7
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.1e-54 214.5 180 58.9
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.1e-53 214.2 240 53.3
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.8e-53 213.4 239 54.4
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.7e-51 206.8 216 54.2
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 3.2e-50 202.6 210 53.8
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 3.2e-50 202.6 236 50.4
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 6.0e-49 198.4 206 54.9
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.7e-48 196.8 177 58.2
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.3e-47 192.6 231 46.3
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 2.4e-45 186.4 134 76.9
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 5.3e-45 185.3 134 63.4
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 1.5e-44 183.7 222 49.1
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 2.8e-38 162.9 231 42.4
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 5.5e-34 148.7 207 41.5
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.7e-33 146.4 171 46.2
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 5.1e-32 142.1 213 40.8
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.5e-31 140.6 228 35.5
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 7.4e-31 138.3 106 61.3
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.6e-30 137.1 226 35.8
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.8e-30 136.3 247 42.5
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.8e-30 135.6 244 41.4
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 6.9e-29 131.7 226 35.0
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 7.6e-28 128.3 232 36.2
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 8.4e-27 124.8 232 34.9
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.1e-21 107.8 152 46.7
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 3.1e-21 106.3 165 43.0
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 7.2e-18 95.1 179 34.1
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 5.3e-13 79.0 75 58.7
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 5.3e-13 79.0 75 58.7
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.4e-10 70.9 164 31.1
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 7.9e-09 65.1 78 48.7
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.1e-07 61.2 71 50.7


User provided reference genes

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