Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 8.2e-216 753.4 380 100.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.5e-108 396.4 327 61.8
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 8.2e-107 391.3 329 61.1
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.2e-105 387.5 328 59.5
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 3.8e-104 382.5 328 59.5
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 4.8e-99 365.5 329 59.3
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 6.3e-99 365.2 326 59.5
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.1e-98 362.5 328 57.3
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 5.3e-98 362.1 329 56.5
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 3.5e-97 359.4 328 57.9
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 7.7e-97 358.2 328 57.0
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 5.0e-96 355.5 328 57.0
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.4e-95 354.0 316 59.2
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 2.7e-94 349.7 328 58.2
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.7e-94 349.0 328 56.4
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 5.7e-92 342.0 328 55.5
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.8e-91 339.0 329 55.3
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.1e-90 337.8 328 54.3
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.6e-89 333.2 328 54.9
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 4.2e-87 325.9 352 51.4
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 4.2e-87 325.9 329 51.4
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 5.5e-87 325.5 329 52.6
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 9.4e-87 324.7 328 54.0
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 1.2e-86 324.3 332 52.4
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.6e-86 323.9 328 53.4
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 8.0e-86 321.6 330 51.8
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.0e-85 319.7 330 52.1
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 2.6e-84 316.6 329 50.8
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.6e-84 316.6 329 51.1
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.7e-83 313.9 329 52.3
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.1e-82 311.2 330 50.3
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 2.4e-82 310.1 329 50.5
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 3.1e-82 309.7 328 50.6
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 3.1e-82 309.7 325 50.2
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 2.7e-81 306.6 331 51.4
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 3.5e-81 306.2 329 51.1
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 3.5e-81 306.2 329 50.2
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.7e-80 303.9 339 49.9
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.1e-79 301.2 327 50.2
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 1.5e-79 300.8 327 49.8
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.9e-79 300.4 347 50.4
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 3.2e-79 299.7 340 49.4
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 7.2e-79 298.5 300 53.0
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 9.4e-79 298.1 330 49.1
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.2e-78 297.7 330 48.8
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.6e-78 297.4 330 48.8
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.7e-78 295.8 337 48.7
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 6.1e-78 295.4 328 47.9
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.0e-77 293.1 329 48.6
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.0e-77 293.1 329 48.6
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.2e-77 292.4 331 48.0
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.8e-77 291.6 329 49.5
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 8.8e-77 291.6 330 47.9
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.5e-76 290.8 328 48.5
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 2.0e-76 290.4 320 46.6
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.0e-76 290.4 328 49.1
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.7e-75 287.3 329 48.6
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.7e-75 287.3 330 47.6
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 8.3e-75 285.0 330 48.8
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 8.3e-75 285.0 331 49.5
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.1e-74 284.6 315 48.9
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.4e-74 283.5 341 46.6
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 4.1e-74 282.7 327 47.7
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 7.0e-74 282.0 339 46.9
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.2e-73 281.2 330 46.1
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.2e-73 281.2 331 46.2
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.7e-73 280.0 330 48.8
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 4.5e-73 279.3 272 50.7
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 5.9e-73 278.9 323 49.5
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 7.7e-73 278.5 331 45.3
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.0e-72 278.1 253 60.5
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 2.3e-72 276.9 332 45.8
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 3.8e-72 276.2 327 48.3
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 5.0e-72 275.8 331 45.6
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 5.0e-72 275.8 329 46.8
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 5.0e-72 275.8 320 45.9
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 6.6e-72 275.4 315 46.7
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 8.6e-72 275.0 327 47.4
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.5e-71 274.2 333 47.1
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.5e-71 273.5 327 48.3
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.5e-71 273.5 300 48.0
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 2.5e-71 273.5 328 45.1
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 3.3e-71 273.1 322 46.6
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 4.2e-71 272.7 331 45.3
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 5.5e-71 272.3 331 45.3
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 7.2e-71 271.9 331 45.3
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.1e-70 270.4 328 45.7
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.0e-69 268.1 329 47.1
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 1.4e-69 267.7 328 45.4
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 1.4e-69 267.7 332 47.6
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.8e-69 267.3 329 45.3
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 4.0e-69 266.2 314 47.8
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 6.8e-69 265.4 331 46.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.2e-68 264.6 342 46.2
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 3.4e-68 263.1 274 51.5
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 4.4e-68 262.7 329 45.6
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.3e-67 261.2 327 45.3
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.2e-67 260.4 286 48.6
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 2.8e-67 260.0 324 44.1
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 2.8e-67 260.0 272 50.4
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 8.3e-67 258.5 328 46.3
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.1e-66 258.1 320 46.6
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.4e-66 257.7 308 48.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.4e-66 257.7 299 46.5
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.4e-66 257.7 329 44.7
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.4e-66 257.7 328 43.9
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.2e-65 254.6 315 43.8
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 3.5e-65 253.1 313 46.3
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 5.9e-65 252.3 285 49.8
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 7.8e-65 251.9 272 49.6
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.0e-64 251.5 313 47.0
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 5.0e-64 249.2 340 42.4
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.1e-63 248.1 327 44.3
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 3.3e-63 246.5 329 40.7
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 9.5e-63 245.0 332 43.1
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 1.6e-62 244.2 321 43.0
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 3.6e-62 243.0 321 43.0
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 4.7e-62 242.7 316 43.4
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.1e-61 240.0 339 44.0
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 4.0e-61 239.6 190 63.2
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 3.4e-60 236.5 332 43.7
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 7.5e-60 235.3 276 48.2
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 7.5e-60 235.3 276 48.2
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 3.7e-59 233.0 276 48.6
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.7e-59 233.0 328 43.3
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 4.1e-58 229.6 276 46.7
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 5.4e-58 229.2 329 41.0
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 4.6e-57 226.1 330 40.9
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 7.8e-57 225.3 347 40.3
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 4.7e-54 216.1 273 44.3
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 1.8e-53 214.2 314 39.8
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 4.4e-52 209.5 202 48.5
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.7e-51 207.6 276 44.2
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 8.3e-51 205.3 291 43.0
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.1e-50 204.9 318 39.6
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.0e-49 199.1 128 68.8
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 8.6e-48 195.3 329 39.8
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 8.6e-48 195.3 128 68.0
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 8.1e-46 188.7 128 65.6
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.2e-45 186.0 233 43.3
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.2e-44 184.9 233 42.5
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 7.6e-36 155.6 282 36.9
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.4e-29 134.8 283 34.3
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 4.0e-29 133.3 325 30.5
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 1.6e-25 121.3 94 57.4
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.6e-14 84.7 134 41.0
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 6.0e-09 66.2 273 26.7
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 1.1e-07 62.0 256 25.4
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.8e-06 57.4 39 71.8


User provided reference genes

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