Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 2.7e-46 188.3 97 100.0
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 5.1e-37 157.5 100 81.0
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 9.6e-36 153.3 100 79.0
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 6.2e-35 150.6 100 77.0
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 2.4e-34 148.7 99 79.8
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 9.0e-34 146.7 100 77.0
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 9.0e-34 146.7 100 77.0
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.3e-32 142.9 100 74.0
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.2e-32 142.1 100 74.0
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 3.8e-32 141.4 100 74.0
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 4.9e-32 141.0 101 73.3
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 4.9e-32 141.0 101 73.3
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 1.1e-31 139.8 108 70.4
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 1.1e-31 139.8 101 76.2
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 2.4e-31 138.7 99 72.7
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.2e-30 136.3 96 75.0
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.2e-30 136.3 101 74.3
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.1e-30 135.6 93 79.6
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 3.5e-30 134.8 101 74.3
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 1.0e-29 133.3 100 71.0
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 1.3e-29 132.9 99 72.7
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 3.9e-29 131.3 100 67.0
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 5.1e-29 131.0 97 69.1
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 8.7e-29 130.2 103 69.9
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 8.7e-29 130.2 97 70.1
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 7.4e-28 127.1 96 70.8
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.6e-27 125.9 95 70.5
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.1e-27 125.6 97 69.1
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.8e-27 125.2 103 68.0
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 3.7e-27 124.8 99 65.7
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 6.2e-27 124.0 99 69.7
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 1.1e-26 123.2 95 69.5
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.4e-26 122.9 98 67.3
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 2.4e-26 122.1 101 68.3
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 3.1e-26 121.7 97 68.0
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 3.1e-26 121.7 75 81.3
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.0e-26 121.3 100 65.0
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.0e-26 121.3 96 65.6
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 6.9e-26 120.6 96 64.6
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 6.9e-26 120.6 95 64.2
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 9.0e-26 120.2 99 61.6
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 9.0e-26 120.2 95 68.4
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 9.0e-26 120.2 96 66.7
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 1.2e-25 119.8 96 65.6
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 1.5e-25 119.4 97 64.9
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 1.5e-25 119.4 97 67.0
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 1.5e-25 119.4 97 67.0
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 1.5e-25 119.4 95 65.3
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 1.5e-25 119.4 94 66.0
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 1.5e-25 119.4 96 64.6
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 2.0e-25 119.0 96 66.7
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.6e-25 118.6 96 63.5
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 2.6e-25 118.6 97 64.9
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 3.4e-25 118.2 95 66.3
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 4.5e-25 117.9 92 66.3
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 4.5e-25 117.9 94 64.9
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 4.5e-25 117.9 96 65.6
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 9.9e-25 116.7 95 63.2
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 9.9e-25 116.7 97 64.9
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 9.9e-25 116.7 78 70.5
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 1.3e-24 116.3 100 62.0
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 1.3e-24 116.3 97 60.8
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.3e-24 116.3 89 66.3
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 1.7e-24 115.9 97 64.9
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 2.9e-24 115.2 96 65.6
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 2.9e-24 115.2 95 62.1
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 2.9e-24 115.2 95 68.4
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 3.8e-24 114.8 99 64.6
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 4.9e-24 114.4 92 66.3
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 4.9e-24 114.4 100 61.0
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 6.4e-24 114.0 97 61.9
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 1.1e-23 113.2 93 65.6
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 1.1e-23 113.2 97 63.9
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.4e-23 112.8 100 60.0
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.4e-23 112.8 95 62.1
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 1.9e-23 112.5 94 63.8
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.9e-23 112.5 94 63.8
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.9e-23 112.5 94 63.8
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.9e-23 112.5 96 62.5
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.4e-23 112.1 94 63.8
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 2.4e-23 112.1 90 66.7
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 2.4e-23 112.1 95 62.1
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 3.2e-23 111.7 93 61.3
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 4.2e-23 111.3 92 64.1
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 4.2e-23 111.3 92 63.0
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 5.5e-23 110.9 84 67.9
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 7.1e-23 110.5 101 58.4
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.2e-22 109.8 92 66.3
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 1.2e-22 109.8 97 59.8
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 2.1e-22 109.0 96 61.5
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 2.1e-22 109.0 100 56.0
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 2.7e-22 108.6 93 59.1
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 7.9e-22 107.1 96 59.4
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 1.0e-21 106.7 93 60.2
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 2.3e-21 105.5 101 57.4
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.0e-21 105.1 94 60.6
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 3.0e-21 105.1 75 76.0
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 1.5e-20 102.8 91 61.5
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 3.3e-20 101.7 91 59.3
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 4.3e-20 101.3 70 70.0
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 4.3e-20 101.3 91 60.4
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 4.3e-20 101.3 91 60.4
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 4.3e-20 101.3 91 60.4
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 4.3e-20 101.3 91 62.6
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 5.6e-20 100.9 93 60.2
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.6e-20 100.9 77 70.1
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.6e-20 100.9 77 70.1
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 2.8e-19 98.6 93 59.1
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 2.8e-19 98.6 93 59.1
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.1e-18 96.7 99 49.5
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 1.1e-18 96.7 94 56.4
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 1.4e-18 96.3 93 57.0
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 1.4e-18 96.3 93 57.0
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 1.4e-18 96.3 93 57.0
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 2.4e-18 95.5 63 81.0
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 5.3e-18 94.4 66 66.7
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 5.3e-18 94.4 138 48.6
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 4.5e-17 91.3 68 64.7
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 3.8e-16 88.2 78 60.3
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 4.9e-16 87.8 74 64.9
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 6.5e-16 87.4 92 50.0
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 1.4e-15 86.3 77 59.7
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.4e-15 86.3 91 53.8
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.9e-15 85.9 84 53.6
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 5.5e-15 84.3 98 51.0
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 7.1e-15 84.0 109 51.4
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 7.1e-15 84.0 76 59.2
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 1.2e-14 83.2 109 51.4
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 8.7e-13 77.0 87 51.7
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 8.7e-13 77.0 87 50.6
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-12 76.6 88 51.1
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.1e-12 76.6 73 57.5
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 2.5e-12 75.5 76 56.6
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 2.5e-12 75.5 101 44.6
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 7.4e-12 73.9 58 60.3
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 2.2e-11 72.4 87 49.4
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 2.2e-11 72.4 58 62.1
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 4.8e-11 71.2 64 59.4
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 8.2e-11 70.5 57 61.4
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 1.1e-10 70.1 58 62.1
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 6.9e-10 67.4 59 59.3
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 3.4e-09 65.1 50 60.0
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 7.2e-07 57.4 43 67.4
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.2e-06 56.6 72 43.1
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 4.6e-06 54.7 64 43.8
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 7.9e-06 53.9 34 79.4


User provided reference genes

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