Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016085.1 Olea europaea HOM05D000827 ORTHO05D001318 1.2e-47 193.0 107 100.0
Oeu010412.1 Olea europaea HOM05D000827 ORTHO05D001318 2.3e-38 162.2 99 87.9
Lj5A217G84 Lonicera japonica HOM05D000827 ORTHO05D001318 4.3e-29 131.3 99 73.7
MSTRG.16697 Avicennia marina HOM05D000827 ORTHO05D001318 1.3e-28 129.8 100 71.0
Dinv15782 Davidia involucrata HOM05D000827 ORTHO05D001318 8.1e-28 127.1 106 69.8
SGA_v2.0_scaffold13G06620 Striga asiatica HOM05D000827 ORTHO05D001318 1.1e-27 126.7 100 70.0
Dinv42213 Davidia involucrata HOM05D000827 ORTHO05D001318 1.8e-27 125.9 108 69.4
MSTRG.20202 Avicennia marina HOM05D000827 ORTHO05D001318 5.3e-27 124.4 101 70.3
CSS0013162 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 9.0e-27 123.6 109 67.9
Migut.A00713 Erythranthe guttata HOM05D000827 ORTHO05D001318 1.5e-26 122.9 107 67.3
Hma1.2p1_1174F.1_g263910 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 3.4e-26 121.7 106 67.0
Migut.I00273 Erythranthe guttata HOM05D000827 ORTHO05D001318 1.3e-25 119.8 103 68.0
vmacro19463 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 2.2e-25 119.0 106 69.8
Migut.B00414 Erythranthe guttata HOM05D000827 ORTHO05D001318 2.9e-25 118.6 103 67.0
Hma1.2p1_1023F.1_g248950 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 1.4e-24 116.3 108 63.0
Nitab4.5_0004396g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.9e-24 115.9 100 69.0
SalBow6G5645 Salvia bowleyana HOM05D000827 ORTHO05D001318 1.9e-24 115.9 100 68.0
CSS0048380 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 3.2e-24 115.2 104 63.5
Actinidia04377 Actinidia chinensis HOM05D000827 ORTHO05D001318 4.6e-23 111.3 109 62.4
Nitab4.5_0002017g0070 Nicotiana tabacum HOM05D000827 ORTHO05D001318 6.0e-23 110.9 102 65.7
PGSC0003DMG400025852 Solanum tuberosum HOM05D000827 ORTHO05D001318 3.9e-22 108.2 106 60.4
Sopen01g049570 Solanum pennellii HOM05D000827 ORTHO05D001318 8.7e-22 107.1 107 58.9
Solyc01g107330.4 Solanum lycopersicum HOM05D000827 ORTHO05D001318 1.5e-21 106.3 107 58.9
Actinidia34382 Actinidia chinensis HOM05D000827 ORTHO05D001318 2.5e-21 105.5 107 64.5
Nitab4.5_0001480g0030 Nicotiana tabacum HOM05D000827 ORTHO05D001318 2.5e-21 105.5 108 64.8
Nitab4.5_0004685g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 4.3e-21 104.8 108 63.9
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 4.3e-21 104.8 101 59.4
CAN.G606.32 Capsicum annuum HOM05D000827 ORTHO05D001318 5.6e-21 104.4 107 60.7
PGSC0003DMG400009782 Solanum tuberosum HOM05D000827 ORTHO05D001318 2.8e-20 102.1 101 62.4
Nn5g30486 Nelumbo nucifera HOM05D000827 ORTHO05D001318 1.1e-19 100.1 101 63.4
PGSC0003DMG400023191 Solanum tuberosum HOM05D000827 ORTHO05D001318 1.1e-19 100.1 102 62.7
unitig_744.g24220 Utricularia gibba HOM05D000827 ORTHO05D001318 1.1e-19 100.1 100 61.0
TAR628G1002 Trochodendron aralioides HOM05D000827 ORTHO05D001318 1.8e-19 99.4 103 61.2
Nn1g04640 Nelumbo nucifera HOM05D000827 ORTHO05D001318 6.9e-19 97.4 110 57.3
TAR381G1509 Trochodendron aralioides HOM05D000827 ORTHO05D001318 2.6e-18 95.5 99 60.6
Sopen10g020980 Solanum pennellii HOM05D000827 ORTHO05D001318 3.4e-18 95.1 101 58.4
TAR376G0708 Trochodendron aralioides HOM05D000827 ORTHO05D001318 7.6e-18 94.0 99 62.6
Cpa.g.sc200.3 Carica papaya HOM05D000827 ORTHO05D001318 4.9e-17 91.3 108 54.6
COL.COLO4_32550 Corchorus olitorius HOM05D000827 ORTHO05D001318 8.4e-17 90.5 77 67.5
Atru.chr5.2422 Acer truncatum HOM05D000827 ORTHO05D001318 1.1e-16 90.1 102 60.8
Aqoxy6G02793 Aquilegia oxysepala HOM05D000827 ORTHO05D001318 1.1e-16 90.1 88 63.6
Ciclev10029545m.g Citrus clementina HOM05D000827 ORTHO05D001318 1.1e-16 90.1 103 60.2
TWI79G0611 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 1.4e-16 89.7 102 56.9
Gohir.D12G020900 Gossypium hirsutum HOM05D000827 ORTHO05D001318 2.4e-16 89.0 100 55.0
Aa31sc72G70 Aethionema arabicum HOM05D000827 ORTHO05D001318 3.2e-16 88.6 102 55.9
Duzib052G0022 Durio zibethinus HOM05D000827 ORTHO05D001318 4.2e-16 88.2 101 55.4
Gorai.008G021200 Gossypium raimondii HOM05D000827 ORTHO05D001318 5.5e-16 87.8 100 55.0
THA.LOC104819539 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 5.5e-16 87.8 103 54.4
Thecc.02G112800 Theobroma cacao HOM05D000827 ORTHO05D001318 5.5e-16 87.8 101 56.4
Lsat_1_v5_gn_7_86080 Lactuca sativa HOM05D000827 ORTHO05D001318 1.2e-15 86.7 108 52.8
THA.LOC104807230 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 1.2e-15 86.7 103 55.3
HanXRQChr16g0509121 Helianthus annuus HOM05D000827 ORTHO05D001318 2.1e-15 85.9 105 50.5
Cfa004619 Carpinus fangiana HOM05D000827 ORTHO05D001318 2.7e-15 85.5 106 56.6
Gohir.A12G020600 Gossypium hirsutum HOM05D000827 ORTHO05D001318 2.7e-15 85.5 100 54.0
Thhalv10026522m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 3.5e-15 85.1 102 54.9
Prupe.8G139100 Prunus persica HOM05D000827 ORTHO05D001318 3.5e-15 85.1 108 56.5
AL7G16980 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 4.6e-15 84.7 107 57.0
C01p04480 Brassica napus HOM05D000827 ORTHO05D001318 6.0e-15 84.3 100 56.0
BolC1t00434H Brassica oleracea HOM05D000827 ORTHO05D001318 6.0e-15 84.3 100 56.0
Aa31LG8G12940 Aethionema arabicum HOM05D000827 ORTHO05D001318 7.9e-15 84.0 103 51.5
A03p62820 Brassica napus HOM05D000827 ORTHO05D001318 1.0e-14 83.6 104 53.8
BraA03t15358Z Brassica rapa HOM05D000827 ORTHO05D001318 1.0e-14 83.6 104 53.8
C07p60510 Brassica napus HOM05D000827 ORTHO05D001318 1.3e-14 83.2 102 52.9
BolC7t46483H Brassica oleracea HOM05D000827 ORTHO05D001318 1.3e-14 83.2 102 52.9
BraA01t00400Z Brassica rapa HOM05D000827 ORTHO05D001318 1.8e-14 82.8 100 55.0
PGR042G0825 Punica granatum HOM05D000827 ORTHO05D001318 2.3e-14 82.4 106 54.7
DCAR_001667 Daucus carota HOM05D000827 ORTHO05D001318 3.0e-14 82.0 107 52.3
TWI31G1098 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 3.0e-14 82.0 102 52.9
Gohir.D02G206000 Gossypium hirsutum HOM05D000827 ORTHO05D001318 3.9e-14 81.6 99 52.5
ClCG02G006640 Citrullus lanatus HOM05D000827 ORTHO05D001318 5.1e-14 81.3 67 67.2
Gohir.A03G184500 Gossypium hirsutum HOM05D000827 ORTHO05D001318 5.1e-14 81.3 99 52.5
AT4G34290 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 6.7e-14 80.9 107 54.2
Carub.0007s0607 Capsella rubella HOM05D000827 ORTHO05D001318 6.7e-14 80.9 106 54.7
CARHR242480 Cardamine hirsuta HOM05D000827 ORTHO05D001318 1.5e-13 79.7 72 63.9
CiPaw.06G167600 Carya illinoinensis HOM05D000827 ORTHO05D001318 1.5e-13 79.7 105 54.3
Duzib132G0744 Durio zibethinus HOM05D000827 ORTHO05D001318 1.5e-13 79.7 71 64.8
CiPaw.05G014400 Carya illinoinensis HOM05D000827 ORTHO05D001318 2.5e-13 79.0 106 55.7
QL11p032161 Quercus lobata HOM05D000827 ORTHO05D001318 2.5e-13 79.0 106 53.8
RcHm_v2.0_Chr6g0254211 Rosa chinensis HOM05D000827 ORTHO05D001318 2.5e-13 79.0 113 54.9
Sp3g28300 Schrenkiella parvula HOM05D000827 ORTHO05D001318 3.3e-13 78.6 99 50.5
CsaV3_7G007990 Cucumis sativus L. HOM05D000827 ORTHO05D001318 4.3e-13 78.2 67 65.7
Eucgr.G01289 Eucalyptus grandis HOM05D000827 ORTHO05D001318 5.6e-13 77.8 107 52.3
Carub.0003s2888 Capsella rubella HOM05D000827 ORTHO05D001318 7.4e-13 77.4 105 52.4
Potri.009G092200 Populus trichocarpa HOM05D000827 ORTHO05D001318 1.3e-12 76.6 106 49.1
ATR0618G387 Amborella trichopoda HOM05D000827 ORTHO05D001318 1.6e-12 76.3 62 67.7
CANSAT25G0462 Cannabis sativa HOM05D000827 ORTHO05D001318 2.1e-12 75.9 102 54.9
Gorai.005G233400 Gossypium raimondii HOM05D000827 ORTHO05D001318 2.1e-12 75.9 99 50.5
Sabra09G0070900 Salix brachista HOM05D000827 ORTHO05D001318 2.1e-12 75.9 106 48.1
BcaC06g30919 Brassica carinata HOM05D000827 ORTHO05D001318 3.7e-12 75.1 66 63.6
Manes.10G072600 Manihot esculenta HOM05D000827 ORTHO05D001318 3.7e-12 75.1 70 61.4
Thhalv10022904m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 4.8e-12 74.7 107 50.5
AL3G46700 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 8.2e-12 73.9 104 50.0
Peaxi162Scf00016g02621 Petunia axillaris HOM05D000827 ORTHO05D001318 8.2e-12 73.9 91 52.7
ATR0661G022 Amborella trichopoda HOM05D000827 ORTHO05D001318 1.1e-11 73.6 99 50.5
CDE04G0823 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 1.1e-11 73.6 63 61.9
DCAR_021969 Daucus carota HOM05D000827 ORTHO05D001318 1.1e-11 73.6 86 52.3
Oeu011145.1 Olea europaea HOM05D001121 ORTHO05D001256 1.1e-11 73.6 38 89.5
Sed0001641 Sechium edule HOM05D000827 ORTHO05D001318 1.4e-11 73.2 94 52.1
CDE06G1156 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 1.8e-11 72.8 99 47.5
MELO3C018505.2 Cucumis melo HOM05D000827 ORTHO05D001318 1.8e-11 72.8 100 50.0
Actinidia05504 Actinidia chinensis HOM05D000827 ORTHO05D001318 3.1e-11 72.0 38 86.8
AT2G14880 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 4.0e-11 71.6 104 51.0
BcaC01g00917 Brassica carinata HOM05D000827 ORTHO05D001318 4.0e-11 71.6 103 48.5
Manes.10G072700 Manihot esculenta HOM05D000827 ORTHO05D001318 1.2e-10 70.1 104 45.2
Ca_24348_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001318 2.0e-10 69.3 72 59.7
PSO541G1858 Papaver somniferum HOM05D000827 ORTHO05D001318 5.8e-10 67.8 42 76.2
PSO675G7513 Papaver somniferum HOM05D000827 ORTHO05D001318 5.8e-10 67.8 42 76.2
Psat4g228120 Pisum sativum HOM05D000827 ORTHO05D001318 7.6e-10 67.4 71 57.7
FAN15G0914 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.0e-09 67.0 107 52.3
arahy.Tifrunner.gnm1.ann1.4BPU9Y Arachis hypogaea HOM05D000827 ORTHO05D001318 1.7e-09 66.2 103 42.7
arahy.Tifrunner.gnm1.ann1.MJPM8B Arachis hypogaea HOM05D000827 ORTHO05D001318 1.7e-09 66.2 103 42.7
FAN20G2663 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.9e-09 65.5 107 51.4
FvH4_2g04600 Fragaria vesca HOM05D000827 ORTHO05D001318 4.9e-09 64.7 107 51.4
DCAR_013509 Daucus carota HOM05D000827 ORTHO05D001318 6.5e-09 64.3 83 49.4
Phvul.002G052700 Phaseolus vulgaris HOM05D000827 ORTHO05D001318 6.5e-09 64.3 99 45.5
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 8.4e-09 63.9 110 48.2
Lj1g0012448 Lotus japonicus HOM05D000827 ORTHO05D001318 8.4e-09 63.9 70 55.7
Lalb_Chr05g0210761 Lupinus albus HOM05D000827 ORTHO05D001318 1.1e-08 63.5 59 64.4
FAN27G0395 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.9e-08 62.8 107 48.6
Peaxi162Scf00193g00721 Petunia axillaris HOM05D000827 ORTHO05D001318 1.9e-08 62.8 63 54.0
Cc02_g19550 Coffea canephora HOM05D000827 ORTHO05D001318 3.2e-08 62.0 30 90.0
Os03g0761000 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001318 3.2e-08 62.0 41 70.7
Oeu055157.1 Olea europaea HOM05D000020 ORTHO05D000156 4.2e-08 61.6 30 90.0
Os12g0507500 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001318 4.2e-08 61.6 67 47.8
Potri.001G297400 Populus trichocarpa HOM05D000827 ORTHO05D001318 5.5e-08 61.2 80 50.0
Glyma.01G243300 Glycine max HOM05D000827 ORTHO05D001318 7.1e-08 60.8 64 50.0
VMungo1215G3336 Vigna mungo HOM05D000827 ORTHO05D001318 7.1e-08 60.8 99 45.5
Ah.03g146290 Amaranthus hybridus HOM05D000827 ORTHO05D001318 9.3e-08 60.5 101 46.5
Sc16g0004950 Simmondsia chinensis HOM05D000827 ORTHO05D001318 9.3e-08 60.5 70 54.3
AUR62003961 Chenopodium quinoa HOM05D000827 ORTHO05D001318 1.2e-07 60.1 57 57.9
CiPaw.12G054400 Carya illinoinensis HOM05D000827 ORTHO05D001318 2.1e-07 59.3 61 47.5
Sabra13G0061500 Salix brachista HOM05D000827 ORTHO05D001318 2.7e-07 58.9 54 57.4
A08p16970 Brassica napus HOM05D000827 ORTHO05D001318 7.9e-07 57.4 43 67.4
BraA08t33660Z Brassica rapa HOM05D000827 ORTHO05D001318 7.9e-07 57.4 43 67.4
Nitab4.5_0000030g0470 Nicotiana tabacum HOM05D000827 ORTHO05D001318 7.9e-07 57.4 63 50.8
Zm00001eb214330 Zea mays HOM05D000827 ORTHO05D001318 7.9e-07 57.4 55 54.5
Zm00001eb264760 Zea mays HOM05D000827 ORTHO05D001318 1.0e-06 57.0 66 42.4
Actinidia27981 Actinidia chinensis HOM05D000827 ORTHO05D001318 1.3e-06 56.6 30 83.3
AUR62038273 Chenopodium quinoa HOM05D000827 ORTHO05D001318 1.3e-06 56.6 57 54.4
Glyma.11G001000 Glycine max HOM05D000827 ORTHO05D001318 1.3e-06 56.6 105 41.0
Potri.013G070600 Populus trichocarpa HOM05D000827 ORTHO05D001318 1.3e-06 56.6 43 60.5
Medtr5g005200 Medicago truncatula HOM05D000827 ORTHO05D001318 1.8e-06 56.2 108 43.5
TAR628G0728 Trochodendron aralioides HOM05D001207 ORTHO05D007056 1.8e-06 56.2 102 46.1
EL10Ac6g15667 Beta vulgaris HOM05D000827 ORTHO05D001318 2.3e-06 55.8 91 44.0
Zm00001eb231120 Zea mays HOM05D000827 ORTHO05D001318 5.1e-06 54.7 51 49.0
Nn1g07395 Nelumbo nucifera HOM05D000827 ORTHO05D001576 6.7e-06 54.3 54 50.0
QL08p008344 Quercus lobata HOM05D000827 ORTHO05D001576 8.7e-06 53.9 99 36.4


User provided reference genes

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