Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 2097.0 1081 100.0
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1439.5 1064 72.3
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1408.7 1069 70.4
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1390.2 1072 69.0
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1381.3 1071 68.5
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1376.3 1073 68.8
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1369.8 1069 68.7
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1349.3 1072 68.1
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1345.5 1071 67.5
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1340.9 1077 67.5
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1333.9 1090 68.1
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1295.4 1021 68.3
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1247.3 1064 63.8
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1231.9 1068 62.7
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1228.4 1084 61.4
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1228.4 1066 62.9
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1225.7 1104 61.3
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1221.8 1063 63.1
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1221.1 1079 62.4
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1219.5 1063 63.2
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1217.2 1160 60.4
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1215.3 1077 61.7
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1211.8 1067 62.9
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1208.7 1075 61.5
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1208.7 1071 61.9
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1208.0 1085 60.9
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1207.2 1081 61.3
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1205.3 1072 61.9
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1203.7 1070 61.5
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1202.2 1076 61.4
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1200.7 1075 61.0
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1200.7 1075 61.2
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1196.0 1073 61.6
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1195.6 1069 60.8
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1195.3 1075 60.5
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1192.6 1074 61.4
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1191.0 1071 61.5
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1189.1 1074 61.1
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1187.6 1074 60.9
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1184.9 1077 60.4
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1178.3 1076 59.8
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1176.0 1074 60.2
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1169.5 1065 59.8
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1167.5 1077 58.7
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1167.5 1071 59.4
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1164.4 1069 58.7
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1162.1 1069 58.7
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1158.3 1077 58.3
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1157.1 1077 58.2
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1156.7 1067 59.0
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1147.9 1077 57.9
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1144.4 1070 58.6
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1135.2 1069 58.7
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1134.0 1066 58.8
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1132.1 1065 59.0
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1131.7 1103 58.2
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1129.8 1081 58.2
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1128.6 1065 58.5
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1127.9 1065 58.6
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1126.7 1066 57.9
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1125.9 1065 58.5
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1122.8 1063 58.3
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1119.0 1093 57.5
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1116.3 1073 57.4
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1115.9 1107 56.8
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1115.9 1107 56.8
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1115.1 1107 56.8
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1114.4 1064 57.6
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1112.8 1116 56.2
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1109.7 1078 57.1
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1105.9 1077 57.4
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1105.5 1072 57.5
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1100.9 1079 57.1
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1097.4 1072 57.1
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1095.5 1064 57.4
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1095.1 1080 57.3
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1090.5 1068 57.2
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1089.3 1073 57.4
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1089.3 1073 57.4
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1088.6 1152 55.6
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1082.4 1069 57.0
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1080.9 1081 56.3
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1078.9 1085 56.8
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1076.2 1080 55.9
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 7.4e-312 1074.7 1065 56.9
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 7.4e-312 1074.7 1079 55.7
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 7.4e-312 1074.3 1084 56.6
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 7.4e-312 1073.5 1065 56.6
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 1.9e-310 1069.3 1065 56.9
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 2.5e-310 1068.9 1080 56.1
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 9.5e-310 1067.0 1076 55.0
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 8.1e-309 1063.9 1083 56.9
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 1.3e-298 1030.0 1035 56.6
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 6.4e-298 1027.7 1093 54.3
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 1.1e-297 1026.9 1008 57.8
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 4.8e-285 984.9 1068 53.9
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 7.6e-275 951.0 856 61.8
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 3.0e-271 939.1 1016 53.6
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 1.1e-260 904.0 1082 49.5
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 2.9e-258 896.0 1061 51.0
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 9.7e-254 880.9 841 58.4
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.6e-243 847.0 1071 47.6
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.3e-242 844.0 710 62.4
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 8.8e-239 831.2 1074 47.9
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.4e-236 823.9 635 68.7
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 2.9e-234 816.2 1036 46.4
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 6.3e-229 798.5 659 65.9
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 9.8e-222 774.6 660 64.4
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 8.6e-218 761.5 1098 45.4
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 4.7e-216 755.7 962 47.4
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 7.3e-209 731.9 766 53.3
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.3e-199 700.3 689 56.9
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.0e-194 684.9 713 53.9
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.9e-188 664.1 730 53.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.3e-181 641.3 562 63.2
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.4e-175 621.3 1116 39.1
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 3.4e-174 616.7 1133 36.7
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 4.2e-172 609.8 639 54.6
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.7e-165 587.8 624 54.0
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 9.3e-164 582.0 1119 37.1
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 1.2e-163 581.6 563 57.7
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 3.3e-161 573.5 407 73.0
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.2e-160 569.3 409 73.1
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 8.2e-160 568.9 409 72.6
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 1.1e-143 515.4 1063 35.9
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.8e-98 365.2 1264 27.8
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.4e-82 312.4 449 45.0
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.4e-73 281.2 387 45.7
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 1.6e-70 272.3 213 67.1
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-67 262.3 309 47.9
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 8.1e-67 260.0 211 65.4
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.4e-66 259.2 202 69.8
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 1.2e-62 246.1 154 85.1
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 6.0e-62 243.8 222 58.6
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 6.6e-61 240.4 249 56.2
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 5.6e-60 237.3 254 50.0
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.3e-56 226.1 214 55.1
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 5.1e-53 214.2 250 51.6
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 1.8e-50 205.7 215 52.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.9e-48 198.4 183 55.7
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.1e-46 192.2 159 64.8
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.7e-45 186.8 212 51.4
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.7e-45 186.8 212 51.4
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-44 185.7 256 46.5
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-42 179.9 204 52.0
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 1.2e-41 176.4 210 46.7
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 7.4e-36 157.1 106 72.6
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-34 152.5 133 57.1
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.3e-34 151.0 134 56.7
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 4.5e-33 147.9 130 57.7
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 7.7e-33 147.1 143 52.4
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.6e-30 137.9 133 59.4
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 3.0e-29 135.2 99 64.6
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.2e-27 127.1 113 55.8
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-24 119.8 130 52.3
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.4e-23 116.3 235 38.3
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.2e-23 115.2 126 47.6
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 3.8e-16 91.7 57 80.7
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.0e-13 82.0 64 62.5
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.6e-12 79.0 194 30.9
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 5.3e-10 71.2 113 44.2
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 2.0e-09 69.3 73 53.4
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.5e-09 68.6 50 64.0


User provided reference genes

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