Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 5.0e-79 297.7 153 100.0
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 5.4e-33 144.8 173 50.9
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.0e-31 140.6 160 56.2
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 5.0e-31 138.3 151 55.0
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 9.5e-30 134.0 162 46.9
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.6e-29 133.3 142 50.7
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 6.2e-29 131.3 154 51.9
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.6e-24 116.7 139 49.6
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 2.0e-24 116.3 143 50.3
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 2.0e-24 116.3 132 56.8
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 2.0e-24 116.3 156 44.9
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 3.5e-24 115.5 179 46.9
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 4.6e-24 115.2 146 45.9
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 1.0e-23 114.0 143 53.1
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 1.3e-23 113.6 167 44.3
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.7e-23 113.2 155 47.7
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.3e-23 112.8 135 50.4
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 2.3e-23 112.8 147 41.5
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 5.0e-23 111.7 163 45.4
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 6.6e-23 111.3 164 43.3
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 1.9e-22 109.8 143 47.6
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 2.5e-22 109.4 130 54.6
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 4.3e-22 108.6 120 51.7
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 5.6e-22 108.2 141 47.5
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 7.3e-22 107.8 156 45.5
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 7.3e-22 107.8 138 50.7
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 9.5e-22 107.5 142 48.6
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 2.1e-21 106.3 153 49.7
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 2.8e-21 105.9 147 44.9
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 4.7e-21 105.1 181 42.5
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 4.7e-21 105.1 144 50.7
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 8.1e-21 104.4 149 47.7
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.1e-20 104.0 158 47.5
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.1e-20 104.0 157 44.6
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.4e-20 103.6 146 44.5
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 1.8e-20 103.2 150 48.0
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 3.1e-20 102.4 143 50.3
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 6.8e-20 101.3 142 47.9
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 6.8e-20 101.3 156 44.9
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 6.8e-20 101.3 151 45.0
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 8.9e-20 100.9 161 44.7
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.9e-20 100.9 121 49.6
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 2.6e-19 99.4 138 47.8
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 3.4e-19 99.0 142 45.8
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 3.4e-19 99.0 142 45.8
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 3.4e-19 99.0 127 49.6
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 4.4e-19 98.6 167 35.3
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 5.8e-19 98.2 139 48.9
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 9.8e-19 97.4 160 45.6
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 9.8e-19 97.4 173 40.5
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 1.3e-18 97.1 176 38.6
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.7e-18 96.7 123 48.0
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.2e-18 96.3 137 35.8
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.9e-18 95.9 167 40.7
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 2.9e-18 95.9 148 39.2
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 3.7e-18 95.5 141 36.9
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 4.9e-18 95.1 138 34.8
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 6.4e-18 94.7 164 42.7
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 6.4e-18 94.7 148 39.2
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 6.4e-18 94.7 145 37.2
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-17 94.0 123 47.2
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.1e-17 94.0 178 38.2
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.1e-17 94.0 149 43.6
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 1.4e-17 93.6 134 44.0
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 1.4e-17 93.6 181 38.1
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.4e-17 92.8 157 45.2
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 2.4e-17 92.8 140 42.9
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 3.2e-17 92.4 128 43.8
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 3.2e-17 92.4 145 44.1
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 4.1e-17 92.0 154 42.2
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 7.1e-17 91.3 170 40.6
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 7.1e-17 91.3 183 34.4
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 2.1e-16 89.7 108 46.3
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 3.5e-16 89.0 143 43.4
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 4.6e-16 88.6 137 43.8
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 6.0e-16 88.2 56 62.5
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 7.8e-16 87.8 149 43.0
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.0e-15 87.4 162 31.5
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 1.7e-15 86.7 120 44.2
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.3e-15 86.3 159 40.3
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 2.3e-15 86.3 145 42.1
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 6.6e-15 84.7 155 39.4
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 6.6e-15 84.7 170 40.6
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 6.6e-15 84.7 153 36.6
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 8.6e-15 84.3 195 34.4
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 8.6e-15 84.3 120 38.3
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.1e-14 84.0 218 31.7
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.5e-14 83.6 149 43.0
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 2.5e-14 82.8 156 39.7
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 2.5e-14 82.8 53 60.4
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 4.3e-14 82.0 58 53.4
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 5.6e-14 81.6 115 47.0
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 7.3e-14 81.3 120 47.5
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 7.3e-14 81.3 59 52.5
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 7.3e-14 81.3 59 52.5
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.3e-14 81.3 115 47.0
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.3e-14 81.3 115 47.0
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 7.3e-14 81.3 115 47.0
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.2e-13 80.5 158 39.2
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 1.2e-13 80.5 120 46.7
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 1.6e-13 80.1 58 51.7
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 1.6e-13 80.1 144 42.4
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.1e-13 79.7 141 38.3
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 2.8e-13 79.3 54 55.6
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 2.8e-13 79.3 54 55.6
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.8e-13 79.3 59 50.8
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 2.8e-13 79.3 59 50.8
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 3.6e-13 79.0 56 55.4
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 3.6e-13 79.0 56 55.4
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 4.7e-13 78.6 56 53.6
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 6.2e-13 78.2 53 56.6
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 6.2e-13 78.2 53 56.6
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 6.2e-13 78.2 53 56.6
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 6.2e-13 78.2 53 56.6
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 8.1e-13 77.8 54 53.7
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 8.1e-13 77.8 54 53.7
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.1e-13 77.8 157 42.7
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.1e-12 77.4 216 28.2
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 1.8e-12 76.6 58 55.2
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.1e-12 75.9 126 44.4
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 5.2e-12 75.1 148 40.5
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 6.8e-12 74.7 52 53.8
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 6.8e-12 74.7 148 39.9
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.2e-11 73.9 166 28.9
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 2.0e-11 73.2 145 37.2
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 2.6e-11 72.8 144 40.3
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.6e-11 72.8 149 38.3
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 2.6e-11 72.8 138 38.4
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.4e-11 72.4 163 40.5
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 3.4e-11 72.4 116 42.2
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 7.6e-11 71.2 46 60.9
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 7.6e-11 71.2 54 50.0
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.9e-11 70.9 169 37.9
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.3e-10 70.5 128 35.9
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.3e-10 70.5 56 51.8
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.7e-10 70.1 51 51.0
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.7e-10 70.1 48 52.1
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.7e-10 70.1 48 52.1
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.2e-10 69.7 114 43.9
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.9e-10 69.3 106 42.5
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.9e-10 69.3 54 50.0
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 3.8e-10 68.9 53 49.1
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.9e-10 68.6 58 44.8
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 6.4e-10 68.2 189 32.8
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 8.4e-10 67.8 58 46.6
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.1e-09 67.4 58 43.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.4e-09 67.0 57 45.6
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.9e-09 66.6 48 47.9
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.4e-09 66.2 58 43.1
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.4e-09 66.2 58 43.1
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 4.1e-09 65.5 42 61.9
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 1.2e-08 63.9 116 39.7
Nn3g17864 Nelumbo nucifera HOM05D005179 ORTHO05D006225 6.6e-07 58.2 110 30.9
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.3e-06 55.8 45 48.9


User provided reference genes

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