Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu015915.1 Olea europaea HOM05D002889 ORTHO05D003366 2.5e-84 315.5 168 100.0
arahy.Tifrunner.gnm1.ann1.PFSA3S Arachis hypogaea HOM05D002889 ORTHO05D003366 5.3e-74 281.2 168 88.7
MSTRG.12505 Avicennia marina HOM05D002889 ORTHO05D003366 6.9e-74 280.8 193 79.3
Migut.N02247 Erythranthe guttata HOM05D002889 ORTHO05D003366 2.0e-73 279.3 191 80.1
Dinv43034 Davidia involucrata HOM05D002889 ORTHO05D003366 7.6e-73 277.3 190 79.5
Potri.002G253200 Populus trichocarpa HOM05D002889 ORTHO05D003366 6.5e-72 274.2 191 78.5
GSVIVG01028494001 Vitis vinifera HOM05D002889 ORTHO05D003366 8.4e-72 273.9 190 77.9
Gohir.D08G210800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.1e-71 273.5 193 77.7
Gorai.004G223500 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.1e-71 273.5 193 77.7
arahy.Tifrunner.gnm1.ann1.EIAU9G Arachis hypogaea HOM05D002889 ORTHO05D003366 1.4e-71 273.1 191 78.0
Dinv19240 Davidia involucrata HOM05D002889 ORTHO05D003366 1.4e-71 273.1 190 78.9
TWI14G1217 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 1.4e-71 273.1 190 78.9
Atru.chr5.1927 Acer truncatum HOM05D002889 ORTHO05D003366 1.9e-71 272.7 193 77.2
MD10G1170900 Malus domestica HOM05D002889 ORTHO05D003366 1.9e-71 272.7 189 78.3
Manes.12G044400 Manihot esculenta HOM05D002889 ORTHO05D003366 1.9e-71 272.7 191 78.0
Nn3g19858 Nelumbo nucifera HOM05D002889 ORTHO05D003366 2.5e-71 272.3 190 77.9
CiPaw.03G153400 Carya illinoinensis HOM05D002889 ORTHO05D003366 3.2e-71 271.9 190 77.9
Gohir.A08G192800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 3.2e-71 271.9 193 77.2
Nitab4.5_0000813g0100 Nicotiana tabacum HOM05D002889 ORTHO05D003366 3.2e-71 271.9 190 77.9
Prupe.8G209400 Prunus persica HOM05D002889 ORTHO05D003366 3.2e-71 271.9 189 78.3
QL09p043970 Quercus lobata HOM05D002889 ORTHO05D003366 3.2e-71 271.9 190 78.4
DCAR_012623 Daucus carota HOM05D002889 ORTHO05D003366 4.2e-71 271.6 189 77.2
Thecc.01G236600 Theobroma cacao HOM05D002889 ORTHO05D003366 4.2e-71 271.6 190 78.9
FAN15G1177 Fragaria x ananassa HOM05D002889 ORTHO05D003366 5.5e-71 271.2 189 78.3
FAN24G0698 Fragaria x ananassa HOM05D002889 ORTHO05D003366 5.5e-71 271.2 189 78.3
Lj1g0020070 Lotus japonicus HOM05D002889 ORTHO05D003366 5.5e-71 271.2 192 76.0
Medtr7g099480 Medicago truncatula HOM05D002889 ORTHO05D003366 5.5e-71 271.2 189 77.8
TAR362G1318 Trochodendron aralioides HOM05D002889 ORTHO05D003366 5.5e-71 271.2 190 77.9
TPR.G7556 Trifolium pratense HOM05D002889 ORTHO05D003366 7.1e-71 270.8 190 77.9
Actinidia09497 Actinidia chinensis HOM05D002889 ORTHO05D003366 9.3e-71 270.4 190 76.3
Ciclev10018498m.g Citrus clementina HOM05D002889 ORTHO05D003366 9.3e-71 270.4 193 76.7
Duzib133G1137 Durio zibethinus HOM05D002889 ORTHO05D003366 9.3e-71 270.4 190 78.4
Glyma.13G130000 Glycine max HOM05D002889 ORTHO05D003366 9.3e-71 270.4 192 76.6
FAN27G1075 Fragaria x ananassa HOM05D002889 ORTHO05D003366 1.6e-70 269.6 189 77.8
CiPaw.04G108600 Carya illinoinensis HOM05D002889 ORTHO05D003366 2.1e-70 269.2 191 77.0
Cc01_g17450 Coffea canephora HOM05D002889 ORTHO05D003366 2.1e-70 269.2 190 77.9
Solyc06g008040.3 Solanum lycopersicum HOM05D002889 ORTHO05D003366 2.1e-70 269.2 191 76.4
Haze_24745 Corylus avellana HOM05D002889 ORTHO05D003366 2.7e-70 268.9 190 77.4
Lj5g0008167 Lotus japonicus HOM05D002889 ORTHO05D003366 2.7e-70 268.9 189 77.8
RcHm_v2.0_Chr6g0285551 Rosa chinensis HOM05D002889 ORTHO05D003366 2.7e-70 268.9 189 77.2
Sopen06g002880 Solanum pennellii HOM05D002889 ORTHO05D003366 2.7e-70 268.9 191 75.9
TWI23G0798 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 2.7e-70 268.9 189 77.8
VMungo0720G0228 Vigna mungo HOM05D002889 ORTHO05D003366 3.5e-70 268.5 190 76.8
Medtr1g069165 Medicago truncatula HOM05D002889 ORTHO05D003366 4.6e-70 268.1 190 76.8
Nitab4.5_0004779g0010 Nicotiana tabacum HOM05D002889 ORTHO05D003366 4.6e-70 268.1 190 76.3
Psat3g050120 Pisum sativum HOM05D002889 ORTHO05D003366 4.6e-70 268.1 190 76.3
PGR044G2403 Punica granatum HOM05D002889 ORTHO05D003366 6.0e-70 267.7 193 76.7
Ca_08769_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 7.9e-70 267.3 190 76.8
Sabra02G0192400 Salix brachista HOM05D002889 ORTHO05D003366 7.9e-70 267.3 191 75.9
Solyc09g063030.4 Solanum lycopersicum HOM05D002889 ORTHO05D003366 7.9e-70 267.3 190 77.4
Sopen09g025200 Solanum pennellii HOM05D002889 ORTHO05D003366 7.9e-70 267.3 190 77.4
Actinidia37572 Actinidia chinensis HOM05D002889 ORTHO05D003366 1.0e-69 266.9 189 76.7
Cfa002518 Carpinus fangiana HOM05D002889 ORTHO05D003366 1.0e-69 266.9 190 76.8
Phvul.001G168400 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 1.0e-69 266.9 192 75.5
arahy.Tifrunner.gnm1.ann1.73DRY2 Arachis hypogaea HOM05D002889 ORTHO05D003366 1.3e-69 266.5 190 76.3
arahy.Tifrunner.gnm1.ann1.CB4TML Arachis hypogaea HOM05D002889 ORTHO05D003366 1.3e-69 266.5 190 76.3
Lalb_Chr25g0289711 Lupinus albus HOM05D002889 ORTHO05D003366 1.3e-69 266.5 191 76.4
Psat6g064880 Pisum sativum HOM05D002889 ORTHO05D003366 1.3e-69 266.5 190 75.8
MSTRG.17535 Avicennia marina HOM05D002889 ORTHO05D003366 1.8e-69 266.2 193 75.1
SalBow6G0687 Salvia bowleyana HOM05D002889 ORTHO05D003366 1.8e-69 266.2 193 76.7
Eucgr.K03590 Eucalyptus grandis HOM05D002889 ORTHO05D003366 2.3e-69 265.8 193 75.1
Glyma.03G170000 Glycine max HOM05D002889 ORTHO05D003366 2.3e-69 265.8 192 75.0
Glyma.10G042600 Glycine max HOM05D002889 ORTHO05D003366 2.3e-69 265.8 192 76.0
Manes.13G042800 Manihot esculenta HOM05D002889 ORTHO05D003366 3.0e-69 265.4 191 75.9
TPR.G35800 Trifolium pratense HOM05D002889 ORTHO05D003366 3.0e-69 265.4 190 75.3
CSS0022688 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D003366 3.9e-69 265.0 189 75.7
Peaxi162Scf00052g02011 Petunia axillaris HOM05D002889 ORTHO05D003366 3.9e-69 265.0 190 76.3
VMungo1383G1051 Vigna mungo HOM05D002889 ORTHO05D003366 5.1e-69 264.6 192 75.0
Glyma.19G171200 Glycine max HOM05D002889 ORTHO05D003366 6.7e-69 264.2 192 75.0
Phvul.007G156100 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 6.7e-69 264.2 193 74.6
Nitab4.5_0002727g0040 Nicotiana tabacum HOM05D002889 ORTHO05D003366 8.7e-69 263.8 192 74.5
Nn1g03087 Nelumbo nucifera HOM05D002889 ORTHO05D003366 1.1e-68 263.5 191 75.9
Rhsim13G0041900 Rhododendron simsii HOM05D002889 ORTHO05D003366 3.3e-68 261.9 189 76.2
Ca_09624_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 4.3e-68 261.5 190 75.8
HanXRQChr13g0409041 Helianthus annuus HOM05D002889 ORTHO05D003366 4.3e-68 261.5 188 76.1
Lalb_Chr02g0152941 Lupinus albus HOM05D002889 ORTHO05D003366 4.3e-68 261.5 189 76.2
Nitab4.5_0003180g0050 Nicotiana tabacum HOM05D002889 ORTHO05D003366 5.7e-68 261.2 190 75.3
TWI59G1284 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 5.7e-68 261.2 190 76.3
CAN.G154.1 Capsicum annuum HOM05D002889 ORTHO05D003366 7.4e-68 260.8 191 74.3
Peaxi162Scf00499g00610 Petunia axillaris HOM05D002889 ORTHO05D003366 7.4e-68 260.8 191 73.8
Aqoxy5G00053 Aquilegia oxysepala HOM05D002889 ORTHO05D003366 9.6e-68 260.4 191 75.4
CAN.G941.45 Capsicum annuum HOM05D002889 ORTHO05D003366 9.6e-68 260.4 191 73.8
Duzib138G1300 Durio zibethinus HOM05D002889 ORTHO05D003366 9.6e-68 260.4 190 75.8
ATR0787G124 Amborella trichopoda HOM05D002889 ORTHO05D003366 1.3e-67 260.0 192 72.9
Carub.0003s3449 Capsella rubella HOM05D002889 ORTHO05D003366 1.3e-67 260.0 190 75.3
Cpa.g.sc8.204 Carica papaya HOM05D002889 ORTHO05D003366 1.3e-67 260.0 185 76.2
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 1.6e-67 259.6 193 74.1
Lalb_Chr20g0113361 Lupinus albus HOM05D002889 ORTHO05D003366 2.1e-67 259.2 191 75.4
Aa31LG8G17120 Aethionema arabicum HOM05D002889 ORTHO05D003366 2.8e-67 258.8 190 74.2
AL3G47890 Arabidopsis lyrata HOM05D002889 ORTHO05D003366 2.8e-67 258.8 190 75.3
AUR62025387 Chenopodium quinoa HOM05D002889 ORTHO05D003366 3.7e-67 258.5 193 73.6
MELO3C024150.2 Cucumis melo HOM05D002889 ORTHO05D003366 3.7e-67 258.5 191 72.8
Sed0001453 Sechium edule HOM05D002889 ORTHO05D003366 4.8e-67 258.1 190 73.2
Gohir.A07G202300 Gossypium hirsutum HOM05D002889 ORTHO05D003366 6.3e-67 257.7 190 75.8
Gohir.D07G208500 Gossypium hirsutum HOM05D002889 ORTHO05D003366 6.3e-67 257.7 190 75.8
HPP92_027294 Vanilla planifolia HOM05D002889 ORTHO05D003366 6.3e-67 257.7 190 72.6
Thhalv10001879m.g Eutrema salsugineum HOM05D002889 ORTHO05D003366 8.2e-67 257.3 190 73.7
Gorai.001G235400 Gossypium raimondii HOM05D002889 ORTHO05D003366 8.2e-67 257.3 190 75.3
unitig_746.g26747 Utricularia gibba HOM05D002889 ORTHO05D003366 8.2e-67 257.3 193 74.6
HanXRQChr10g0287251 Helianthus annuus HOM05D002889 ORTHO05D003366 1.4e-66 256.5 188 74.5
unitig_899.g15235 Utricularia gibba HOM05D002889 ORTHO05D003366 1.4e-66 256.5 193 73.1
CsaV3_7G025450 Cucumis sativus L. HOM05D002889 ORTHO05D003366 1.8e-66 256.1 189 73.0
Gorai.001G183300 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.8e-66 256.1 185 75.7
AT2G20190 Arabidopsis thaliana HOM05D002889 ORTHO05D003366 2.4e-66 255.8 190 74.2
C07p00990 Brassica napus HOM05D002889 ORTHO05D003366 3.1e-66 255.4 189 74.1
DCAR_018539 Daucus carota HOM05D002889 ORTHO05D003366 3.1e-66 255.4 199 71.4
Lsat_1_v5_gn_8_90261 Lactuca sativa HOM05D002889 ORTHO05D003366 3.1e-66 255.4 188 74.5
Sp3g33430 Schrenkiella parvula HOM05D002889 ORTHO05D003366 3.1e-66 255.4 189 73.5
THA.LOC104820061 Tarenaya hassleriana HOM05D002889 ORTHO05D003366 3.1e-66 255.4 191 72.8
BcaC06g36696 Brassica carinata HOM05D002889 ORTHO05D003366 4.1e-66 255.0 189 74.1
A09p12740 Brassica napus HOM05D002889 ORTHO05D003366 4.1e-66 255.0 190 73.2
BolC7t40536H Brassica oleracea HOM05D002889 ORTHO05D003366 4.1e-66 255.0 189 74.1
BraA09t36918Z Brassica rapa HOM05D002889 ORTHO05D003366 4.1e-66 255.0 190 73.2
vmacro14772 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 4.1e-66 255.0 187 74.3
Gohir.A07G154000 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.3e-66 254.6 186 74.7
BcaB03g16811 Brassica carinata HOM05D002889 ORTHO05D003366 6.9e-66 254.2 189 73.5
A07p00540 Brassica napus HOM05D002889 ORTHO05D003366 6.9e-66 254.2 189 73.5
BraA07t27848Z Brassica rapa HOM05D002889 ORTHO05D003366 6.9e-66 254.2 189 73.5
TAR365G1138 Trochodendron aralioides HOM05D002889 ORTHO05D003366 6.9e-66 254.2 190 73.7
CARHR110690 Cardamine hirsuta HOM05D002889 ORTHO05D003366 9.0e-66 253.8 190 73.2
Eucgr.H00823 Eucalyptus grandis HOM05D002889 ORTHO05D003366 9.0e-66 253.8 189 73.5
BcaNung04093 Brassica carinata HOM05D002889 ORTHO05D003366 4.5e-65 251.5 190 72.1
EL10Ac7g17762 Beta vulgaris HOM05D002889 ORTHO05D003366 5.9e-65 251.1 227 63.4
SEGI_17570 Sequoiadendron giganteum HOM05D002889 ORTHO05D003366 1.3e-64 250.0 191 70.2
Sed0016475 Sechium edule HOM05D002889 ORTHO05D003366 5.0e-64 248.1 189 70.9
MBI10_g16806_MAGBIO Magnolia biondii HOM05D002889 ORTHO05D003366 1.1e-63 246.9 190 71.1
C09p15080 Brassica napus HOM05D002889 ORTHO05D003366 3.2e-63 245.4 190 71.1
BolC9t54414H Brassica oleracea HOM05D002889 ORTHO05D003366 3.2e-63 245.4 190 71.1
SGA_v2.0_scaffold42G16158 Striga asiatica HOM05D002889 ORTHO05D003366 4.2e-63 245.0 250 60.0
Zm00001eb077900 Zea mays HOM05D002889 ORTHO05D003366 2.1e-62 242.7 193 69.4
vmacro02730 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 8.7e-61 237.3 217 63.6
CDE02G1653 Ceratophyllum demersum HOM05D002889 ORTHO05D002017 1.3e-59 233.4 188 68.1
PSO170G4103 Papaver somniferum HOM05D002889 ORTHO05D003366 1.1e-58 230.3 190 68.9
Hund05497 Selenicereus undatus HOM05D002889 ORTHO05D003366 1.1e-58 230.3 171 74.3
AagrBONN_evm.TU.Sc2ySwM_228.3600 Anthoceros agrestis HOM05D002889 ORTHO05D003366 1.4e-58 229.9 190 65.8
PGR083G0457 Punica granatum HOM05D002889 ORTHO05D003366 4.1e-58 228.4 189 66.1
PSO764G0331 Papaver somniferum HOM05D002889 ORTHO05D003366 5.3e-58 228.0 189 68.8
ECA236G1707 Erigeron canadensis HOM05D002889 ORTHO05D003366 6.9e-58 227.6 171 74.3
Rhsim01G0258400 Rhododendron simsii HOM05D002889 ORTHO05D003366 1.2e-57 226.9 219 59.8
SGA_v2.0_scaffold3G01589 Striga asiatica HOM05D002889 ORTHO05D003366 2.0e-57 226.1 193 66.8
Hund18347 Selenicereus undatus HOM05D002889 ORTHO05D003366 2.6e-57 225.7 279 51.3
Ah.08g213900 Amaranthus hybridus HOM05D002889 ORTHO05D003366 2.9e-56 222.2 193 66.3
Thecc.04G215400 Theobroma cacao HOM05D002889 ORTHO05D003366 6.5e-56 221.1 190 62.6
Duzib212G0822 Durio zibethinus HOM05D002889 ORTHO05D003366 1.9e-55 219.5 190 61.1
Gohir.D09G053074 Gossypium hirsutum HOM05D002889 ORTHO05D003366 2.5e-55 219.2 190 62.1
Mapoly0066s0036 Marchantia polymorpha HOM05D002889 ORTHO05D003366 4.2e-55 218.4 190 62.6
Gorai.006G054600 Gossypium raimondii HOM05D002889 ORTHO05D003366 2.7e-54 215.7 190 61.6
Gohir.A09G053900 Gossypium hirsutum HOM05D002889 ORTHO05D003366 3.9e-53 211.8 190 60.0
SMO271G0072 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 3.9e-53 211.8 190 59.5
SMO358G0024 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 1.7e-51 206.5 183 60.1
BcaC04g22811 Brassica carinata HOM05D002889 ORTHO05D003366 3.1e-50 202.2 190 63.7
Pp3c8_18290 Physcomitrium patens HOM05D002889 ORTHO05D003366 2.6e-49 199.1 192 56.2
Pp3c24_11460 Physcomitrium patens HOM05D002889 ORTHO05D003366 3.4e-49 198.7 191 56.5
CDE08G0296 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 1.1e-47 193.7 182 61.5
ClCG09G009410 Citrullus lanatus HOM05D002889 ORTHO05D003366 2.0e-44 183.0 190 57.4
Lj2C1137G6 Lonicera japonica HOM05D002889 ORTHO05D003366 2.0e-44 183.0 140 72.9
Lsat_1_v5_gn_9_11241 Lactuca sativa HOM05D002889 ORTHO05D003366 2.4e-42 176.0 140 68.6
AagrBONN_evm.TU.Sc2ySwM_344.3269 Anthoceros agrestis HOM05D002889 ORTHO05D003366 7.0e-42 174.5 185 53.0
AUR62008857 Chenopodium quinoa HOM05D002889 ORTHO05D003366 1.7e-40 169.9 165 60.0
Zm00001eb426220 Zea mays HOM05D002889 ORTHO05D003366 2.5e-39 166.0 144 64.6
Lj1A81T56 Lonicera japonica HOM05D002889 ORTHO05D003366 2.2e-35 152.9 87 88.5
EL10Ac7g17764 Beta vulgaris HOM05D002889 ORTHO05D003366 1.1e-34 150.6 84 89.3
Os02g0816300 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 5.0e-32 141.7 178 46.1
COL.COLO4_05728 Corchorus olitorius HOM05D002889 ORTHO05D003366 1.8e-29 133.3 148 53.4
CDE09G0034 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 6.8e-29 131.3 73 86.3
Oeu017344.1 Olea europaea HOM05D002889 ORTHO05D003366 8.8e-29 131.0 106 72.6
Zm00001eb258850 Zea mays HOM05D002889 ORTHO05D003366 7.5e-28 127.9 217 37.8
EL10Ac7g17766 Beta vulgaris HOM05D002889 ORTHO05D003366 7.0e-26 121.3 112 61.6
Gohir.D07G160200 Gossypium hirsutum HOM05D002889 ORTHO05D003366 3.5e-25 119.0 106 67.0
MD05G1182800 Malus domestica HOM05D002889 ORTHO05D003366 4.5e-25 118.6 108 65.7
CBR_g12856 Chara braunii HOM05D002889 ORTHO05D003366 4.2e-23 112.1 151 39.7
CBR_g8665 Chara braunii HOM05D002889 ORTHO05D003366 3.0e-21 105.9 125 43.2
Lj1A81T55 Lonicera japonica HOM05D002889 ORTHO05D003366 3.0e-21 105.9 124 53.2
EL10Ac7g17765 Beta vulgaris HOM05D002889 ORTHO05D003366 6.8e-21 104.8 101 60.4
Gohir.D07G160250 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.4e-18 97.1 76 75.0
FvH4_2g19850 Fragaria vesca HOM05D002889 ORTHO05D003366 3.1e-18 95.9 71 74.6
Sc05g0002470 Simmondsia chinensis HOM05D002889 ORTHO05D003366 6.6e-16 88.2 58 82.8
EL10Ac7g17767 Beta vulgaris HOM05D002889 ORTHO05D003366 1.9e-15 86.7 64 71.9
EL10Ac7g17763 Beta vulgaris HOM05D002889 ORTHO05D003366 2.5e-15 86.3 152 40.8
BcaC05g29830 Brassica carinata HOM05D002889 ORTHO05D012790 3.3e-15 85.9 45 86.7
C05p60400 Brassica napus HOM05D010738 ORTHO05D012790 4.3e-15 85.5 43 90.7
BolC5t34686H Brassica oleracea HOM05D010738 ORTHO05D012790 4.3e-15 85.5 43 90.7
RcHm_v2.0_Chr1g0330771 Rosa chinensis HOM05D002889 ORTHO05D003366 2.1e-14 83.2 68 66.2
PRCOL_00006275 Prasinoderma coloniale HOM05D002889 ORTHO05D003366 3.0e-13 79.3 83 45.8
arahy.Tifrunner.gnm1.ann1.46R0UG Arachis hypogaea HOM05D002853 ORTHO05D003030 1.2e-12 77.4 76 63.2
MCO10G388 Micromonas commoda HOM05D002889 ORTHO05D003366 3.4e-12 75.9 78 48.7


User provided reference genes

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