Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 2.6e-308 1061.2 542 100.0
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 2.8e-217 758.8 536 71.8
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.4e-208 729.9 540 68.0
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.4e-207 725.3 544 67.8
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 3.4e-207 725.3 540 68.1
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 3.5e-204 715.3 528 68.6
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.3e-203 713.4 544 68.6
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.3e-203 713.4 544 68.6
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 3.9e-203 711.8 542 66.6
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 3.7e-201 705.3 540 68.3
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 4.8e-201 704.9 527 69.3
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.0e-200 701.8 541 67.7
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 6.9e-200 701.0 549 66.3
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.5e-199 699.9 549 66.1
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 7.6e-199 697.6 540 66.5
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.0e-198 697.2 541 65.4
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.3e-198 696.8 542 64.9
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 5.5e-197 691.4 541 65.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.6e-196 688.3 542 64.2
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 3.3e-194 682.2 541 66.9
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 4.3e-194 681.8 541 66.9
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.3e-193 680.2 540 65.0
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 2.8e-193 679.1 541 66.7
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 3.8e-190 668.7 545 64.8
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.2e-189 664.5 515 68.2
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.2e-188 663.7 539 63.6
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.3e-187 660.2 544 62.5
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 3.9e-187 658.7 543 62.2
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 5.1e-187 658.3 542 63.8
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 5.7e-186 654.8 543 63.9
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 7.4e-186 654.4 543 61.7
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.7e-185 652.1 542 64.2
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 8.2e-185 651.0 542 63.1
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.4e-184 650.2 542 62.7
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 3.1e-184 649.0 542 62.7
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 5.9e-183 644.8 542 62.7
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 5.9e-183 644.8 546 61.5
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 7.7e-183 644.4 543 63.0
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.3e-182 643.7 547 61.2
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 1.3e-182 643.7 542 62.9
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 2.2e-182 642.9 541 62.1
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.1e-181 640.6 546 60.8
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.1e-181 640.6 541 60.8
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.5e-181 639.4 540 61.3
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 7.2e-181 637.9 540 60.4
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 6.1e-180 634.8 584 58.4
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 6.1e-180 634.8 542 61.3
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.8e-179 633.3 527 63.0
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 5.1e-179 631.7 542 59.2
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.1e-178 630.6 510 62.4
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.5e-178 630.2 543 60.6
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.5e-178 630.2 541 60.1
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 9.7e-178 627.5 583 57.8
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 2.2e-177 626.3 540 59.4
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 4.8e-177 625.2 542 60.5
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 6.3e-177 624.8 543 60.0
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 2.4e-176 622.9 542 60.5
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.4e-176 622.9 545 58.9
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 4.1e-176 622.1 545 58.3
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.2e-175 620.5 541 59.0
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.5e-175 620.2 547 60.5
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.5e-175 620.2 531 59.5
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 7.7e-175 617.8 547 59.6
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.9e-174 615.9 544 59.9
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.1e-173 614.0 504 62.1
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 6.1e-172 608.2 545 58.7
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 1.1e-170 604.0 542 57.7
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 2.6e-170 602.8 543 63.5
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 7.4e-170 601.3 545 57.1
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.3e-169 600.5 542 56.8
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 2.8e-169 599.4 545 56.3
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.4e-168 596.3 545 56.1
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 5.3e-168 595.1 545 56.5
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.2e-167 594.0 537 57.5
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.6e-167 593.6 545 56.5
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.9e-167 591.7 510 60.0
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.7e-167 591.3 510 60.0
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-166 590.5 510 59.6
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-166 590.1 510 59.8
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 2.2e-166 589.7 545 56.1
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.5e-166 587.8 510 59.6
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.1e-165 587.4 572 56.3
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.9e-165 586.6 545 55.8
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.9e-165 586.6 545 56.0
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 4.2e-165 585.5 545 56.5
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 9.4e-165 584.3 531 58.0
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.7e-164 582.8 546 55.7
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.8e-163 580.1 542 56.5
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 2.3e-163 579.7 533 57.0
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 5.7e-162 575.1 545 55.4
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 2.8e-161 572.8 554 55.2
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.8e-161 572.0 511 58.3
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.2e-159 567.4 543 56.4
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.8e-155 553.5 536 55.2
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 1.8e-155 553.5 522 55.4
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.8e-155 553.5 414 67.9
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 6.8e-155 551.6 540 54.4
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 6.8e-155 551.6 541 53.4
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 3.7e-153 545.8 512 53.9
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.5e-141 507.3 555 49.9
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.6e-140 503.8 555 50.6
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.6e-135 487.3 427 59.7
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 3.7e-129 466.1 412 58.0
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.4e-128 464.2 418 58.4
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.5e-117 427.6 552 44.2
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.9e-117 427.2 575 42.3
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 1.6e-116 424.1 548 45.3
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 8.9e-115 418.3 508 48.2
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 6.0e-111 405.6 357 57.1
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.8e-107 394.0 320 63.8
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.4e-104 383.6 423 50.6
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 7.8e-103 378.6 467 46.7
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 9.6e-101 371.7 506 42.3
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 4.9e-97 359.4 359 54.0
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.6e-95 354.4 316 58.2
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 2.3e-94 350.5 488 41.0
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.4e-88 330.5 521 38.0
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-86 324.7 423 44.9
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 6.2e-84 315.8 266 60.9
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 3.5e-79 300.1 488 37.5
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 8.2e-76 288.9 503 37.6
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 2.4e-75 287.3 503 37.6
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 7.6e-74 282.3 346 48.6
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.8e-59 234.6 197 61.4
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 9.1e-59 232.3 204 59.3
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-57 228.0 200 59.5
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 1.7e-57 228.0 264 48.9
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.2e-39 168.7 113 78.8
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.4e-35 154.5 170 52.9
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 7.0e-35 152.9 592 24.5
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.2e-34 152.1 117 66.7
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 8.6e-33 146.0 118 63.6
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 2.8e-31 141.0 190 45.8
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 2.3e-30 137.9 520 27.7
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.8e-30 136.0 105 66.7
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 2.8e-28 131.0 88 68.2
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 4.9e-28 130.2 128 56.2
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.1e-24 119.0 97 63.9
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-24 118.6 104 59.6
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 7.3e-24 116.3 88 68.2
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 2.8e-23 114.4 217 35.0
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 8.9e-22 109.4 508 24.4
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 7.5e-21 106.3 88 63.6
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 7.0e-19 99.8 247 31.6
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.8e-14 85.1 90 46.7
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 8.3e-12 76.3 117 42.7
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 6.6e-09 66.6 60 60.0
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 4.7e-07 60.5 45 68.9


User provided reference genes

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