Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 0.0e+00 1250.7 649 100.0
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 8.4e-253 877.1 650 73.8
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 6.5e-237 824.3 650 67.5
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 3.0e-234 815.5 649 66.6
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 3.3e-217 758.8 650 62.8
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.3e-216 756.9 653 61.1
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 6.5e-213 744.6 647 63.7
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 4.2e-212 741.9 645 63.4
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 8.0e-211 737.6 651 60.4
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 9.7e-209 730.7 651 63.0
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.7e-208 729.9 663 60.6
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 2.2e-208 729.6 663 60.5
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 9.1e-207 724.2 649 62.1
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.2e-206 723.8 656 62.0
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 2.2e-205 719.5 651 61.3
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.6e-198 696.8 648 59.4
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.3e-197 693.7 649 58.2
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.2e-197 693.0 648 57.9
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.5e-197 691.4 654 58.7
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.1e-196 690.6 615 61.0
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.5e-196 690.3 648 57.9
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.5e-196 689.5 650 57.7
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 5.5e-196 688.3 645 58.1
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 6.1e-195 684.9 654 56.4
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.8e-194 683.3 649 57.6
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 3.0e-194 682.6 658 57.6
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 8.8e-194 681.0 658 58.2
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 8.8e-194 681.0 658 58.2
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.6e-193 679.5 653 55.9
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.3e-192 677.2 653 57.3
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.7e-192 676.8 653 57.3
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 1.8e-191 673.3 650 57.5
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 5.4e-191 671.8 644 58.4
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 9.1e-191 671.0 656 56.6
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.9e-190 668.3 655 55.1
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 5.6e-188 661.8 654 56.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 7.2e-188 661.4 650 57.2
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 2.8e-187 659.4 651 56.8
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.1e-187 658.3 657 56.5
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.0e-186 657.5 652 55.1
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 1.8e-186 656.8 671 54.8
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-185 653.7 671 55.0
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-185 653.7 671 55.0
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.5e-185 653.7 656 56.4
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-185 652.5 671 54.8
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 4.4e-185 652.1 650 57.2
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 2.9e-184 649.4 640 55.5
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.9e-184 648.7 667 54.6
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.4e-183 647.1 671 54.7
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-183 646.4 671 54.5
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-182 643.7 671 54.4
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.9e-181 639.0 671 54.1
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.6e-179 633.6 646 55.1
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 4.7e-179 632.1 651 55.3
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 3.1e-178 629.4 654 55.2
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 4.0e-178 629.0 650 54.6
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.3e-176 624.0 657 54.3
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 7.8e-174 614.8 568 61.4
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.1e-171 606.7 647 51.2
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 8.9e-170 601.3 657 52.8
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 2.2e-168 596.7 654 53.1
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.4e-167 593.2 644 53.0
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 9.2e-167 591.3 650 51.4
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 2.1e-166 590.1 653 51.8
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 7.8e-166 588.2 660 51.7
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 3.0e-165 586.3 661 51.9
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 4.3e-164 582.4 647 53.6
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 7.3e-164 581.6 653 50.7
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 9.5e-164 581.3 647 53.3
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.6e-163 580.5 661 51.0
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.6e-163 580.5 589 54.8
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 3.6e-163 579.3 647 53.2
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 4.7e-163 578.9 658 51.7
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-162 577.0 649 52.2
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 3.1e-162 576.2 657 51.8
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 3.1e-162 576.2 650 50.9
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 4.0e-162 575.9 649 52.5
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 8.4e-160 568.2 610 54.3
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 3.2e-159 566.2 660 49.4
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 9.2e-159 564.7 652 50.8
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.0e-157 561.2 663 48.7
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.0e-157 559.7 660 48.9
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 5.1e-157 558.9 652 50.3
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.5e-156 557.4 656 48.9
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 3.3e-156 556.2 664 47.0
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 7.3e-156 555.1 654 49.8
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 2.1e-155 553.5 660 48.3
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 9.9e-153 544.7 663 46.2
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 7.1e-151 538.5 653 46.6
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 3.9e-149 532.7 648 48.0
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 8.7e-149 531.6 595 51.6
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.1e-148 531.2 421 67.0
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.8e-146 523.9 474 60.1
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.4e-145 519.6 474 60.1
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 3.8e-144 516.2 656 45.9
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 7.9e-142 508.4 642 47.8
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 7.9e-142 508.4 645 46.0
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 2.1e-139 500.4 640 44.8
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 4.0e-138 496.1 426 62.7
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.0e-137 493.8 668 45.8
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 4.5e-137 492.7 648 48.0
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 6.4e-136 488.8 660 43.9
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 5.8e-129 465.7 649 45.0
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.9e-127 460.7 680 42.2
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 3.2e-127 459.9 680 40.3
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.8e-122 444.1 682 39.4
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.9e-122 442.2 630 42.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.0e-121 440.7 629 42.3
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 7.9e-118 428.7 411 57.4
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 2.3e-117 427.2 524 48.7
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.8e-115 420.2 347 65.4
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 3.4e-113 413.3 640 43.8
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 1.2e-110 404.8 653 42.0
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 4.8e-99 366.3 336 60.1
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 3.1e-98 363.6 644 39.1
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 5.3e-98 362.8 646 38.7
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 7.0e-98 362.5 645 39.5
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 5.9e-97 359.4 640 39.5
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 5.9e-97 359.4 649 39.1
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 5.5e-95 352.8 644 38.4
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 5.2e-93 346.3 643 38.7
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 3.7e-91 340.1 654 37.9
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.4e-84 317.0 418 46.7
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 6.3e-83 312.8 671 34.0
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 6.5e-80 302.8 416 44.0
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.1e-79 302.0 622 35.7
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 2.2e-75 287.7 626 34.7
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.4e-68 263.5 625 33.4
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.2e-67 261.2 625 33.8
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-65 255.4 626 31.3
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 8.6e-64 249.2 646 34.2
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-55 221.9 574 31.9
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.2e-51 208.0 170 64.1
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.7e-48 198.4 564 32.1
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.0e-48 197.6 306 42.5
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 3.6e-46 190.7 637 27.6
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 6.2e-46 189.9 316 42.1
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-43 182.2 190 56.8
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 5.1e-40 170.2 118 72.9
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 8.6e-40 169.5 119 71.4
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.7e-35 155.2 120 70.8
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 4.3e-31 140.6 168 51.2
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.6e-30 138.7 92 76.1
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.1e-30 138.3 141 53.2
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-29 136.0 157 54.8
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 4.0e-29 134.0 133 59.4
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 5.3e-29 133.7 92 71.7
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.2e-28 132.5 106 63.2
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 2.0e-28 131.7 106 64.2
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-26 124.8 369 30.6
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 7.1e-26 123.2 90 66.7
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.0e-24 119.4 354 29.4
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.5e-23 115.5 71 78.9
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 7.4e-23 113.2 137 53.3
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 9.6e-23 112.8 90 63.3
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 6.9e-21 106.7 90 61.1
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 5.8e-20 103.6 109 55.0
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 2.4e-18 98.2 71 67.6
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 1.0e-16 92.8 88 52.3
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.8e-16 92.0 176 38.1
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-16 92.0 221 35.7
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 6.7e-16 90.1 221 35.3
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 6.7e-16 90.1 221 35.3
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 2.8e-14 84.7 167 33.5
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 2.6e-12 78.2 51 72.5
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-09 69.3 80 48.8
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 3.9e-08 64.3 95 40.0
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 8.7e-08 63.2 53 60.4
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-07 62.8 77 41.6
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 9.7e-07 59.7 71 45.1
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 4.8e-06 57.4 72 40.3


User provided reference genes

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