Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 0.0e+00 1437.2 725 100.0
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 0.0e+00 1076.6 725 77.0
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 1.6e-180 637.1 742 50.3
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 3.2e-168 596.3 729 49.2
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 5.5e-168 595.5 708 49.3
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 1.9e-165 587.0 732 49.3
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 9.0e-155 551.6 740 46.9
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 2.2e-153 547.0 729 47.7
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 3.6e-151 539.7 712 50.0
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 6.7e-150 535.4 804 44.9
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 6.7e-150 535.4 753 46.7
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 1.2e-138 498.0 753 45.2
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 1.3e-137 494.6 744 45.3
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.9e-136 490.7 740 45.9
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 4.8e-132 476.1 757 42.9
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 7.0e-131 472.2 740 44.3
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 2.0e-130 470.7 739 44.1
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 4.5e-130 469.5 739 42.6
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 5.9e-130 469.2 739 44.1
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 1.0e-129 468.4 745 41.6
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 8.5e-129 465.3 773 42.2
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 1.9e-128 464.2 742 42.9
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 6.7e-126 455.7 748 41.8
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 1.7e-124 451.1 764 41.0
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 2.2e-124 450.7 750 42.4
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 1.9e-120 437.6 752 40.6
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 4.2e-120 436.4 771 41.5
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 4.7e-119 433.0 746 41.8
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.4e-118 431.4 722 41.8
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 2.3e-118 430.6 733 42.7
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 3.0e-118 430.3 772 41.5
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 3.0e-118 430.3 769 41.0
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 4.0e-118 429.9 750 42.3
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 2.6e-117 427.2 743 42.1
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 7.5e-117 425.6 752 40.8
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 3.7e-116 423.3 733 40.9
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 1.2e-114 418.3 738 41.3
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 3.5e-114 416.8 750 40.5
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 6.6e-113 412.5 713 41.0
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 8.6e-113 412.1 711 41.2
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 2.5e-112 410.6 769 39.5
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 4.2e-112 409.8 880 35.5
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 7.2e-112 409.1 737 40.7
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.6e-111 407.9 752 40.4
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 8.0e-111 405.6 755 40.4
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 1.8e-110 404.4 755 40.7
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 1.2e-109 401.7 729 41.3
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 1.2e-109 401.7 779 39.9
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 2.0e-109 401.0 776 39.7
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 1.6e-106 391.3 827 36.9
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 5.9e-106 389.4 766 39.6
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 7.8e-106 389.0 910 33.8
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 6.6e-105 386.0 744 38.4
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 3.3e-104 383.6 747 38.4
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 4.3e-104 383.3 773 39.1
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 1.6e-103 381.3 745 38.9
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 4.0e-102 376.7 773 38.7
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 1.2e-101 375.2 552 44.9
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 4.4e-101 373.2 781 36.5
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 3.2e-99 367.1 747 37.2
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 4.6e-98 363.2 740 38.2
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 6.0e-98 362.8 723 36.9
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 1.2e-95 355.1 765 37.1
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 8.0e-95 352.4 763 37.4
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.4e-94 351.7 753 38.0
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 4.4e-93 346.7 770 37.5
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 7.5e-93 345.9 766 37.3
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.9e-92 344.0 767 37.5
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 4.6e-90 336.7 764 37.0
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 4.3e-88 330.1 741 36.0
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 5.6e-88 329.7 731 36.8
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.1e-86 323.9 748 37.4
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 2.4e-83 314.3 724 34.1
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 3.5e-82 310.5 656 37.0
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 7.8e-82 309.3 721 33.1
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 2.5e-80 304.3 766 33.0
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 8.1e-79 299.3 750 37.5
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.2e-77 295.4 766 33.0
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 2.2e-76 291.2 775 33.5
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 3.8e-76 290.4 730 33.3
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 3.2e-75 287.3 753 33.2
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 1.3e-73 282.0 753 33.3
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 3.9e-73 280.4 753 33.7
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.5e-72 278.5 750 34.4
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 1.3e-71 275.4 779 32.0
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 2.0e-69 268.1 783 31.8
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 5.8e-69 266.5 755 31.8
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 2.2e-68 264.6 760 31.7
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 4.6e-66 256.9 736 32.2
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 7.8e-66 256.1 675 32.9
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.0e-65 255.8 738 33.7
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 1.1e-64 252.3 760 31.6
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 1.9e-64 251.5 772 31.3
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 2.8e-63 247.7 768 31.0
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 8.1e-63 246.1 772 33.0
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 3.1e-62 244.2 755 32.8
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 6.9e-62 243.0 280 51.8
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 1.2e-61 242.3 737 31.2
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 3.4e-61 240.7 782 30.4
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 2.9e-60 237.7 799 31.0
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 4.2e-59 233.8 763 30.0
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 7.9e-58 229.6 780 29.4
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 2.5e-56 224.6 703 31.4
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 4.3e-56 223.8 746 30.6
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 5.6e-56 223.4 700 31.4
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 1.3e-55 222.2 707 30.3
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 2.8e-55 221.1 741 30.4
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 4.8e-55 220.3 786 30.0
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.0e-53 214.9 697 29.8
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 4.5e-53 213.8 777 28.7
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 4.5e-53 213.8 777 28.7
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 5.8e-53 213.4 704 30.1
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 7.6e-53 213.0 695 31.2
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 1.6e-50 205.3 780 29.2
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 3.5e-50 204.1 782 29.0
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 4.6e-50 203.8 791 27.8
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 7.9e-50 203.0 683 30.6
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 7.4e-48 196.4 754 29.0
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 1.3e-47 195.7 776 29.1
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 4.8e-47 193.7 764 28.5
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 4.8e-47 193.7 173 58.4
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 2.9e-44 184.5 784 27.9
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 2.9e-44 184.5 784 27.9
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 5.0e-44 183.7 714 28.7
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 4.5e-37 160.6 698 28.1
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 2.2e-36 158.3 697 28.0
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 1.8e-33 148.7 124 58.1
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 4.4e-24 117.5 708 26.1
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 1.2e-21 109.4 96 60.4
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 2.0e-21 108.6 842 25.5
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 2.0e-13 82.0 762 24.5
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 2.2e-12 78.6 776 23.2
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 2.5e-11 75.1 228 30.7
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 8.0e-10 70.1 779 22.6
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 1.3e-07 62.8 138 37.0
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 4.8e-07 60.8 104 41.3
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 5.4e-06 57.4 38 68.4


User provided reference genes

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