Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 3.5e-278 961.1 509 100.0
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 6.2e-134 481.9 514 57.8
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.4e-130 468.8 501 55.9
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 7.1e-130 468.4 513 55.4
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.2e-129 467.6 514 55.6
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.8e-125 453.8 522 52.7
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 5.8e-124 448.7 479 55.5
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 6.4e-123 445.3 500 53.0
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 9.2e-122 441.4 507 53.5
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 3.0e-120 436.4 512 52.3
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 5.1e-120 435.6 514 52.5
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.9e-119 433.7 505 52.5
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 5.6e-119 432.2 459 55.1
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 8.1e-118 428.3 513 51.5
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 3.1e-117 426.4 507 52.5
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 3.1e-117 426.4 497 52.5
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.0e-116 423.7 507 50.5
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 4.4e-116 422.5 501 51.7
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.7e-115 420.6 502 52.4
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.9e-115 419.9 501 50.9
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 2.9e-115 419.9 501 50.9
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 4.9e-115 419.1 505 51.3
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 7.1e-114 415.2 500 50.0
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 2.1e-113 413.7 502 50.2
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 2.7e-113 413.3 504 52.0
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.7e-112 410.6 504 51.0
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 1.7e-112 410.6 510 50.0
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.9e-112 409.5 494 51.4
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 8.7e-112 408.3 503 49.1
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.1e-111 407.9 508 49.8
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 1.5e-111 407.5 513 49.3
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 1.9e-111 407.1 518 50.8
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 4.3e-111 406.0 510 50.6
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 4.3e-111 406.0 502 51.2
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.6e-110 404.1 497 49.7
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 2.8e-110 403.3 509 50.3
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.1e-109 401.4 506 49.4
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.8e-109 400.6 498 50.0
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 3.4e-108 396.4 482 50.4
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 4.5e-108 396.0 506 48.8
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 2.2e-107 393.7 507 48.7
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 4.9e-107 392.5 510 48.4
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.4e-106 390.2 505 48.7
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.4e-106 390.2 506 48.8
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 4.2e-106 389.4 510 47.8
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 5.4e-106 389.0 502 47.8
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 7.1e-106 388.7 509 48.5
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 7.1e-106 388.7 482 49.2
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.6e-105 387.5 510 47.3
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.5e-105 386.3 483 48.4
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 7.9e-105 385.2 479 49.9
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.8e-104 384.0 482 49.0
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 2.3e-104 383.6 510 47.1
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 3.0e-104 383.3 502 47.2
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 3.0e-104 383.3 482 48.3
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.9e-104 382.9 482 48.1
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.1e-104 382.5 483 48.0
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 5.1e-104 382.5 485 50.5
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 7.4e-103 378.6 510 49.0
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.3e-102 377.9 510 46.7
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 1.1e-101 374.8 504 47.2
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 6.9e-101 372.1 433 52.2
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 9.0e-101 371.7 484 47.9
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 2.0e-100 370.5 497 46.3
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.6e-100 370.2 452 50.0
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 5.8e-100 369.0 505 45.7
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 7.6e-100 368.6 497 47.1
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 2.9e-99 366.7 499 47.3
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 3.8e-99 366.3 502 46.2
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 1.4e-98 364.4 512 45.9
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 2.5e-98 363.6 498 45.8
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 9.3e-98 361.7 504 45.6
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 2.1e-97 360.5 511 45.6
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.0e-96 358.2 510 46.5
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 6.7e-96 355.5 501 44.7
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 8.7e-96 355.1 453 48.3
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.5e-95 353.6 591 43.1
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 7.4e-95 352.1 494 46.8
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 9.6e-95 351.7 512 45.9
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 4.0e-93 346.3 506 45.3
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 2.6e-92 343.6 505 44.0
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 5.8e-92 342.4 514 43.8
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.7e-91 340.9 462 48.5
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.8e-91 339.7 490 47.1
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.6e-86 324.3 470 46.4
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 2.2e-86 323.9 500 42.2
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 2.8e-86 323.6 506 42.5
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 3.4e-84 316.6 515 41.7
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 5.0e-83 312.8 481 44.1
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.9e-82 310.8 522 40.4
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 2.0e-79 300.8 494 39.9
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 2.5e-79 300.4 493 39.6
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.7e-79 299.3 429 47.6
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 1.7e-78 297.7 496 40.7
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.2e-78 297.4 506 41.3
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 3.1e-77 293.5 497 39.2
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 9.1e-77 292.0 505 38.6
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 2.0e-76 290.8 497 38.4
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 2.0e-76 290.8 497 38.4
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 3.4e-76 290.0 499 39.7
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 5.9e-76 289.3 505 38.2
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 5.0e-75 286.2 498 39.0
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.1e-74 285.0 494 38.9
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.8e-72 277.7 497 37.8
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 2.2e-70 270.8 435 43.7
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 2.9e-67 260.4 390 46.2
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 3.6e-65 253.4 511 36.4
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 9.7e-63 245.4 499 38.1
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.7e-62 243.4 449 39.2
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 7.0e-61 239.2 430 41.4
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 1.6e-57 228.0 458 36.9
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 4.7e-57 226.5 237 54.9
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 4.2e-50 203.4 216 51.4
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 8.0e-49 199.1 434 35.9
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 2.3e-48 197.6 416 35.6
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 4.5e-44 183.3 418 36.8
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 4.5e-44 183.3 356 39.6
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.3e-43 181.8 429 34.3
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 3.1e-32 144.1 146 54.1
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 3.1e-32 144.1 146 54.1
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 2.2e-30 137.9 385 32.2
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.7e-28 131.0 118 57.6
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.8e-24 118.2 98 72.4
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 1.7e-22 111.7 143 43.4
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 3.7e-22 110.5 160 43.1
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 6.4e-22 109.8 318 30.8
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.1e-20 104.8 162 44.4
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 8.6e-19 99.4 119 42.0
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.8e-16 91.7 449 24.9
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.3e-16 91.3 65 75.4
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.3e-11 74.7 39 74.4
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 6.6e-11 73.2 82 47.6
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 1.5e-10 72.0 87 50.6
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.6e-09 68.6 49 77.6
EL10Ac7g17373 Beta vulgaris HOM05D004182 ORTHO05D010127 2.1e-09 68.2 40 80.0
BcaC04g20783 Brassica carinata HOM05D004182 ORTHO05D010127 2.1e-09 68.2 40 80.0
C04p22500 Brassica napus HOM05D004182 ORTHO05D010127 2.1e-09 68.2 40 80.0
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 2.1e-09 68.2 40 80.0
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 2.1e-09 68.2 40 80.0
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-09 68.2 40 80.0
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-09 68.2 40 80.0
BolSC44t60815H Brassica oleracea HOM05D004182 ORTHO05D010127 2.1e-09 68.2 40 80.0
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-09 68.2 40 80.0
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-09 68.2 40 80.0
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-09 68.2 40 80.0
BraSC103t45421Z Brassica rapa HOM05D004182 ORTHO05D007321 2.1e-09 68.2 40 80.0
BraSC103t45434Z Brassica rapa HOM05D004182 ORTHO05D010127 2.1e-09 68.2 40 80.0
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 2.1e-09 68.2 40 80.0
BraSC25t45903Z Brassica rapa HOM05D004182 ORTHO05D010127 2.1e-09 68.2 40 80.0
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 2.1e-09 68.2 40 80.0
BraSC59t46507Z Brassica rapa HOM05D004182 ORTHO05D010127 2.1e-09 68.2 40 80.0
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 2.1e-09 68.2 40 80.0
Hma1.2p1_0594F.1_g185814 Hydrangea macrophylla HOM05D004182 ORTHO05D010127 2.1e-09 68.2 40 80.0
Hma1.2p1_3221F.1_g334073 Hydrangea macrophylla HOM05D004182 ORTHO05D010127 2.1e-09 68.2 40 80.0
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.2e-09 66.6 48 75.0
arahy.Tifrunner.gnm1.ann1.9XT8BN Arachis hypogaea HOM05D001966 ORTHO05D010127 1.8e-08 65.1 40 77.5
arahy.Tifrunner.gnm1.ann1.H5WC3R Arachis hypogaea HOM05D001966 ORTHO05D011119 1.8e-08 65.1 40 77.5
arahy.Tifrunner.gnm1.ann1.U90T8C Arachis hypogaea HOM05D004182 ORTHO05D010127 1.8e-08 65.1 40 77.5
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 1.8e-08 65.1 40 77.5
arahy.Tifrunner.gnm1.ann1.WY6BZE Arachis hypogaea HOM05D004182 ORTHO05D010127 8.9e-08 62.8 62 51.6
arahy.Tifrunner.gnm1.ann1.CSY78X Arachis hypogaea HOM05D000216 ORTHO05D000634 4.4e-07 60.5 40 72.5
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 9.9e-07 59.3 38 73.7
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 1.3e-06 58.9 67 53.7
MELO3C031967.2 Cucumis melo HOM05D005133 ORTHO05D165940 2.2e-06 58.2 68 54.4
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.8e-06 57.4 71 47.9
Glyma.05G084375 Glycine max HOM05D004182 ORTHO05D010127 6.4e-06 56.6 35 74.3


User provided reference genes

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