Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 6.6e-76 287.3 150 100.0
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.9e-70 269.2 146 91.8
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.9e-70 269.2 146 91.8
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 3.2e-70 268.5 146 90.4
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.2e-69 266.5 146 90.4
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 4.6e-69 264.6 146 90.4
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 4.6e-69 264.6 147 89.1
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 6.0e-69 264.2 146 90.4
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 7.8e-69 263.8 148 89.9
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 7.8e-69 263.8 148 89.2
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 3.0e-68 261.9 146 87.7
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 3.9e-68 261.5 146 89.0
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 8.6e-68 260.4 146 89.0
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.1e-67 260.0 146 87.0
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 4.3e-67 258.1 146 87.7
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 4.3e-67 258.1 145 88.3
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 5.6e-67 257.7 146 88.4
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.2e-66 256.5 146 85.6
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 1.6e-66 256.1 146 87.7
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 2.8e-66 255.4 148 87.2
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.6e-66 255.0 146 85.6
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 4.7e-66 254.6 147 85.0
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 4.7e-66 254.6 146 86.3
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 6.2e-66 254.2 146 85.6
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.1e-65 253.4 146 86.3
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 1.4e-65 253.1 146 85.6
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.4e-65 253.1 146 84.2
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.4e-65 253.1 146 84.2
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.4e-65 253.1 146 84.2
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.8e-65 252.7 146 84.9
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.8e-65 252.7 146 84.2
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 2.3e-65 252.3 146 85.6
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 3.1e-65 251.9 146 84.2
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 3.1e-65 251.9 146 84.2
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 3.1e-65 251.9 146 84.2
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.0e-65 251.5 146 82.9
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 4.0e-65 251.5 146 84.2
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 5.2e-65 251.1 174 76.4
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 5.2e-65 251.1 148 85.8
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 6.8e-65 250.8 146 84.9
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 84.9
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 84.9
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 83.6
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 83.6
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 83.6
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 83.6
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 83.6
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 83.6
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 83.6
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 83.6
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.2e-64 250.0 146 83.6
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.5e-64 249.6 146 83.6
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.5e-64 249.6 146 84.2
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.5e-64 249.6 146 83.6
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.5e-64 249.6 146 84.2
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 4.4e-64 248.1 146 82.9
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 4.4e-64 248.1 146 82.9
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 4.4e-64 248.1 146 82.9
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 5.8e-64 247.7 146 82.2
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 5.8e-64 247.7 146 82.9
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 7.5e-64 247.3 146 82.9
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 9.9e-64 246.9 146 83.6
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.3e-63 246.5 146 82.2
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.7e-63 246.1 146 82.9
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.7e-63 246.1 145 84.1
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 2.2e-63 245.7 146 84.9
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 3.7e-63 245.0 145 84.1
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 3.7e-63 245.0 146 82.9
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 4.9e-63 244.6 146 84.2
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.9e-63 244.6 146 84.2
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 6.4e-63 244.2 146 82.9
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 6.4e-63 244.2 146 84.2
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 8.3e-63 243.8 146 80.8
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 8.3e-63 243.8 146 83.6
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.4e-62 243.0 146 81.5
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.4e-62 243.0 146 82.9
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.9e-62 242.7 146 80.1
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.9e-62 242.7 146 81.5
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.9e-62 242.7 148 80.4
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.4e-62 242.3 146 82.9
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 3.2e-62 241.9 146 78.8
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 3.2e-62 241.9 146 80.8
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 4.1e-62 241.5 146 80.8
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 5.4e-62 241.1 146 80.8
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.4e-62 241.1 148 81.1
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 5.4e-62 241.1 146 80.8
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 5.4e-62 241.1 146 80.8
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 7.1e-62 240.7 146 80.8
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.6e-61 239.6 145 84.8
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.6e-61 239.6 146 80.1
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.1e-61 239.2 146 79.5
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 2.7e-61 238.8 147 81.0
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.5e-61 238.4 148 79.7
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 3.5e-61 238.4 146 78.8
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 7.8e-61 237.3 146 78.8
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 7.8e-61 237.3 146 80.8
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.0e-60 236.9 146 78.8
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.7e-60 236.1 167 73.1
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.3e-60 235.7 146 78.8
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.9e-60 235.0 146 78.8
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 3.9e-60 235.0 146 78.8
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 8.6e-60 233.8 129 89.1
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.5e-59 232.3 146 76.7
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 3.3e-59 231.9 146 76.0
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 9.5e-59 230.3 128 87.5
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.2e-58 229.9 145 77.9
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.6e-58 229.6 146 75.3
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.6e-58 229.6 130 87.7
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.1e-58 229.2 146 74.7
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 2.1e-58 229.2 139 82.0
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 2.8e-58 228.8 144 76.4
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 8.1e-58 227.3 126 89.7
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 8.1e-58 227.3 144 79.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.1e-57 226.9 175 70.3
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.1e-57 226.9 144 77.8
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 5.2e-57 224.6 146 76.7
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.2e-56 223.4 146 75.3
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.6e-56 222.2 162 69.8
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 2.6e-56 222.2 148 74.3
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 4.4e-56 221.5 144 74.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 5.8e-56 221.1 146 74.0
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 7.6e-56 220.7 129 83.7
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.3e-55 219.9 127 85.0
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 1.7e-55 219.5 149 76.5
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 3.2e-54 215.3 145 70.3
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 5.4e-54 214.5 128 83.6
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 6.0e-53 211.1 146 70.5
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 7.8e-53 210.7 146 67.8
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.0e-52 210.3 146 71.2
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 3.9e-52 208.4 146 69.9
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 5.1e-52 208.0 127 78.7
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.4e-49 199.9 131 74.0
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 9.9e-48 193.7 130 76.2
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 9.9e-48 193.7 116 84.5
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 2.2e-47 192.6 126 76.2
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 6.0e-45 184.5 111 81.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.3e-44 183.3 109 84.4
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 3.0e-44 182.2 109 84.4
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 5.1e-44 181.4 140 61.4
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 3.3e-43 178.7 136 61.0
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.2e-40 170.2 146 61.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 2.0e-40 169.5 94 83.0
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.9e-39 165.6 110 76.4
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.8e-39 165.2 95 85.3
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 4.9e-39 164.9 95 86.3
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.9e-35 152.9 120 69.2
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 7.4e-35 151.0 133 54.1
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 2.1e-34 149.4 77 94.8
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 2.4e-33 146.0 87 86.2
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 3.1e-33 145.6 74 91.9
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.5e-32 143.3 137 60.6
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.4e-32 142.1 119 67.2
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 1.7e-31 139.8 84 78.6
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.2e-31 139.4 130 52.3
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-27 126.3 66 93.9
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-25 120.6 74 82.4
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 5.3e-25 118.2 91 63.7
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 2.9e-23 112.5 72 80.6
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 6.5e-23 111.3 89 60.7
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 3.2e-22 109.0 115 49.6
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 9.7e-19 97.4 70 67.1
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-16 89.4 54 85.2
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 6.5e-15 84.7 52 78.8
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 8.5e-15 84.3 42 95.2
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-14 84.0 42 92.9
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 3.6e-13 79.0 125 44.0
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 3.7e-10 68.9 36 83.3
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 4.8e-10 68.6 37 83.8
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 6.9e-09 64.7 69 56.5
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 5.0e-07 58.5 32 90.6
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 2.5e-06 56.2 56 44.6
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 5.5e-06 55.1 40 70.0


User provided reference genes

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