Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 3.9e-100 368.2 200 100.0
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 2.0e-96 355.9 200 91.0
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.1e-93 345.9 200 87.5
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 3.9e-92 341.7 200 84.5
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 1.5e-91 339.7 216 82.4
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.5e-91 339.0 200 85.5
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 3.3e-91 338.6 216 81.5
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 4.3e-91 338.2 216 84.3
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 4.3e-91 338.2 216 81.5
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.6e-90 336.3 216 81.5
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 2.8e-90 335.5 200 85.0
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.7e-90 335.1 216 83.8
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 6.3e-90 334.3 216 80.6
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 6.3e-90 334.3 216 83.3
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.8e-89 332.8 216 81.0
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.4e-89 332.4 216 80.6
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.1e-89 332.0 216 82.9
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 4.1e-89 331.6 216 77.8
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 4.1e-89 331.6 216 78.2
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.1e-89 331.6 216 80.1
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.1e-89 331.6 216 80.1
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 5.3e-89 331.3 216 81.0
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 5.3e-89 331.3 216 81.5
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 5.3e-89 331.3 216 80.6
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 6.9e-89 330.9 216 80.6
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 6.9e-89 330.9 216 80.6
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 6.9e-89 330.9 216 80.1
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 6.9e-89 330.9 216 80.6
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 9.0e-89 330.5 216 77.3
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 9.0e-89 330.5 216 77.3
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 9.0e-89 330.5 216 80.6
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 9.0e-89 330.5 216 77.8
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 9.0e-89 330.5 216 80.1
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.2e-88 330.1 216 81.0
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 1.2e-88 330.1 216 77.3
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.2e-88 330.1 216 79.6
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.2e-88 330.1 214 80.4
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 1.2e-88 330.1 216 79.6
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 1.5e-88 329.7 216 80.6
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 77.3
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 77.3
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 77.3
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 79.2
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.0e-88 329.3 220 79.5
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 76.9
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 76.9
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 79.2
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 79.2
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 79.6
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 79.6
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 79.6
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 5.9e-88 327.8 216 76.4
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 5.9e-88 327.8 216 77.3
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 5.9e-88 327.8 216 79.2
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 7.6e-88 327.4 216 76.9
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 7.6e-88 327.4 216 78.2
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.0e-87 327.0 216 75.9
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.0e-87 327.0 216 75.9
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.0e-87 327.0 216 79.2
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 1.3e-87 326.6 216 79.2
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.3e-87 326.6 216 79.6
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 1.7e-87 326.2 216 75.9
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 1.7e-87 326.2 216 75.9
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.7e-87 326.2 215 79.5
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.2e-87 325.9 216 78.7
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.2e-87 325.9 216 78.2
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 2.9e-87 325.5 216 78.2
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 2.9e-87 325.5 216 81.9
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 3.8e-87 325.1 216 77.8
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 5.0e-87 324.7 216 78.7
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 5.0e-87 324.7 216 78.2
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 5.0e-87 324.7 216 78.2
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 5.0e-87 324.7 216 79.2
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 5.0e-87 324.7 216 78.2
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 5.0e-87 324.7 221 77.4
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 6.5e-87 324.3 216 75.9
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 8.5e-87 323.9 216 77.8
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 8.5e-87 323.9 200 86.0
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 8.5e-87 323.9 216 77.8
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 8.5e-87 323.9 216 77.3
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 1.9e-86 322.8 216 78.2
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 2.5e-86 322.4 216 79.2
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 3.2e-86 322.0 216 78.2
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 4.2e-86 321.6 216 76.9
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 1.2e-85 320.1 216 76.4
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 1.2e-85 320.1 216 81.0
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.1e-85 319.3 216 77.3
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 2.1e-85 319.3 200 86.5
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 2.1e-85 319.3 216 77.3
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 2.7e-85 318.9 216 75.9
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.6e-85 318.5 216 77.8
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.6e-85 318.5 216 77.8
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 4.6e-85 318.2 216 76.4
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 7.9e-85 317.4 216 77.3
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 7.9e-85 317.4 216 76.4
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 1.0e-84 317.0 216 76.9
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.3e-84 316.6 216 77.8
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.8e-84 316.2 216 76.9
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 2.3e-84 315.8 215 75.8
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 2.3e-84 315.8 216 76.4
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 3.0e-84 315.5 216 75.5
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 5.1e-84 314.7 216 76.4
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 6.7e-84 314.3 216 76.4
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 8.7e-84 313.9 215 75.3
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 1.5e-83 313.2 199 80.4
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 1.5e-83 313.2 221 77.8
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.9e-83 312.8 221 73.8
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.9e-83 312.8 215 75.8
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.9e-83 312.8 216 75.0
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.9e-83 312.8 216 75.5
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 3.3e-83 312.0 227 74.4
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 4.3e-83 311.6 216 74.1
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 4.3e-83 311.6 200 85.0
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 5.7e-83 311.2 216 76.9
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 1.6e-82 309.7 216 73.1
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 3.7e-82 308.5 217 74.7
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.1e-81 307.0 200 83.0
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 1.8e-81 306.2 216 74.1
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.1e-81 305.1 200 82.5
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 2.2e-79 299.3 216 69.4
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 8.5e-79 297.4 216 69.9
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 1.4e-78 296.6 216 76.9
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 1.4e-78 296.6 216 76.9
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 9.4e-78 293.9 216 70.4
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 2.1e-77 292.7 218 70.2
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.0e-76 290.4 199 77.4
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 8.8e-76 287.3 216 69.0
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.6e-75 285.8 216 68.5
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 3.3e-75 285.4 216 68.5
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 4.8e-74 281.6 201 78.6
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 2.4e-73 279.3 165 85.5
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.2e-72 276.9 216 66.7
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 1.5e-72 276.6 149 89.9
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 5.0e-71 271.6 214 66.8
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 5.0e-71 271.6 165 82.4
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 1.4e-70 270.0 276 60.1
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 1.6e-69 266.5 165 81.8
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.7e-69 265.8 164 84.8
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.8e-68 263.1 209 69.9
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 1.1e-67 260.4 149 85.9
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 4.4e-67 258.5 200 71.0
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 1.9e-62 243.0 217 63.1
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 7.2e-62 241.1 217 64.1
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 5.7e-59 231.5 203 63.5
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 3.7e-58 228.8 144 74.3
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 3.4e-51 205.7 219 52.5
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 3.0e-44 182.6 233 46.4
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 1.8e-41 173.3 136 69.1
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 6.6e-39 164.9 108 72.2
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 6.6e-39 164.9 108 72.2
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 6.6e-39 164.9 135 67.4
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.6e-37 159.1 268 44.8
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 4.7e-37 158.7 114 75.4
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 6.1e-37 158.3 151 55.0
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.0e-35 153.3 210 41.4
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 5.6e-30 135.2 65 93.8
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 8.0e-29 131.3 74 83.8
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.8e-28 130.2 106 63.2
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.1e-28 129.4 65 86.2
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 6.8e-28 128.3 101 70.3
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 6.8e-28 128.3 101 70.3
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 6.8e-28 128.3 101 70.3
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 6.8e-28 128.3 101 70.3
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 6.8e-28 128.3 101 70.3
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 4.1e-25 119.0 62 82.3
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.3e-23 113.2 81 67.9
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 9.9e-19 97.8 63 82.5
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.7e-15 87.0 74 66.2
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 7.3e-14 81.6 68 66.2
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 3.4e-11 72.8 39 82.1
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.3e-10 70.9 39 79.5
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 4.9e-10 68.9 48 70.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 4.9e-10 68.9 48 70.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 4.9e-10 68.9 48 70.8
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.9e-09 67.0 48 68.8


User provided reference genes

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