Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 5.8e-164 580.9 303 100.0
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 1.4e-61 240.7 296 49.3
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 2.4e-61 240.0 284 48.9
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 1.2e-57 227.6 295 47.1
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 3.6e-57 226.1 291 47.1
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 4.7e-57 225.7 308 46.8
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 2.0e-55 220.3 289 47.8
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 3.4e-55 219.5 289 47.1
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 5.8e-55 218.8 288 45.8
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 1.7e-54 217.2 289 45.3
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 1.7e-54 217.2 291 44.3
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 3.8e-54 216.1 283 45.6
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 3.8e-54 216.1 294 44.2
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 5.4e-53 212.2 301 40.9
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 1.6e-52 210.7 291 44.0
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.7e-51 207.2 309 44.3
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 3.0e-51 206.5 280 44.3
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 3.0e-51 206.5 287 44.6
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 3.9e-51 206.1 282 43.3
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 3.9e-51 206.1 279 45.5
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 3.9e-51 206.1 295 42.7
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 1.1e-50 204.5 285 43.9
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 2.5e-50 203.4 308 41.9
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 7.3e-50 201.8 289 43.6
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 2.8e-49 199.9 296 40.2
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 3.6e-49 199.5 294 41.2
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 6.2e-49 198.7 300 40.3
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 6.2e-49 198.7 300 40.3
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 9.0e-48 194.9 284 43.0
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 2.0e-47 193.7 292 43.2
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 3.4e-47 193.0 319 45.1
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 3.4e-47 193.0 316 40.8
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 3.4e-47 193.0 292 41.1
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 4.5e-47 192.6 288 42.0
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 7.6e-47 191.8 282 42.6
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 7.6e-47 191.8 289 42.9
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.7e-46 190.7 280 42.5
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 4.9e-46 189.1 287 41.1
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 6.4e-46 188.7 290 41.7
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 1.1e-45 188.0 294 41.2
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 2.4e-45 186.8 288 41.7
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 7.1e-45 185.3 288 41.7
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.6e-44 184.1 294 40.1
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 2.7e-44 183.3 290 41.0
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 3.5e-44 183.0 304 39.8
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 1.0e-43 181.4 286 42.3
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 1.3e-43 181.0 295 42.7
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 2.3e-43 180.3 288 38.5
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 2.3e-43 180.3 288 38.5
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 3.9e-43 179.5 282 41.5
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 6.7e-43 178.7 289 39.1
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 6.7e-43 178.7 285 40.7
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 1.1e-42 177.9 288 43.8
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 1.1e-42 177.9 296 40.2
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 2.5e-42 176.8 301 40.2
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 4.3e-42 176.0 295 42.4
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 1.6e-41 174.1 307 39.7
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 2.1e-41 173.7 301 39.9
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 6.2e-41 172.2 285 39.6
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 6.2e-41 172.2 290 38.3
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 8.1e-41 171.8 286 40.6
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 8.1e-41 171.8 300 40.0
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.8e-40 170.6 276 40.6
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 1.8e-40 170.6 292 38.4
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 3.1e-40 169.9 286 40.6
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 4.0e-40 169.5 234 44.0
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 4.0e-40 169.5 286 38.5
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 9.0e-40 168.3 294 38.8
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 1.5e-39 167.5 284 39.8
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 7.6e-39 165.2 313 36.7
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 1.7e-38 164.1 297 38.7
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 2.2e-38 163.7 291 39.2
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 2.9e-38 163.3 302 37.1
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 3.8e-38 162.9 287 38.7
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 2.4e-37 160.2 305 37.4
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 3.2e-37 159.8 248 39.1
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 3.2e-37 159.8 292 39.0
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 5.5e-37 159.1 292 34.6
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 9.3e-37 158.3 299 35.1
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 1.2e-36 157.9 284 36.3
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 1.6e-36 157.5 268 39.2
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.6e-36 157.5 299 38.8
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 2.1e-36 157.1 296 35.1
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 2.1e-36 157.1 294 36.1
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.0e-35 154.8 267 39.7
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.8e-35 154.1 291 35.7
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 3.9e-35 152.9 284 38.4
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 1.5e-34 151.0 290 36.6
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 6.2e-33 145.6 278 37.1
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.2e-31 141.4 277 37.2
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.5e-31 141.0 282 35.5
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 1.5e-31 141.0 226 39.4
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 2.6e-31 140.2 294 34.7
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 1.9e-29 134.0 289 35.6
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 3.0e-27 126.7 284 32.7
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 1.9e-26 124.0 290 33.1
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 9.7e-26 121.7 278 30.6
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 2.4e-24 117.1 297 34.7
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 4.1e-24 116.3 231 35.5
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 1.3e-22 111.3 320 30.0
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 2.1e-20 104.0 110 47.3
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 8.8e-19 98.6 287 30.7
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.5e-18 97.8 189 37.0
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.5e-18 97.8 189 37.0
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 4.3e-18 96.3 114 49.1
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 1.0e-11 75.1 96 51.0
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 8.8e-11 72.0 305 24.6
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 2.6e-10 70.5 302 25.5
AT1G01550 Arabidopsis thaliana HOM05D002440 ORTHO05D002576 5.7e-10 69.3 308 25.0
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 8.2e-09 65.5 306 24.5
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 2.4e-08 63.9 301 24.9
Medtr3g034540 Medicago truncatula HOM05D007109 ORTHO05D008813 5.3e-08 62.8 124 30.6
Sp1g00770 Schrenkiella parvula HOM05D002440 ORTHO05D002576 7.0e-08 62.4 138 31.2
CsaV3_6G000840 Cucumis sativus L. HOM05D002440 ORTHO05D002576 1.2e-07 61.6 302 23.8
Medtr8g028710 Medicago truncatula HOM05D002440 ORTHO05D002576 1.2e-07 61.6 309 27.2
SEGI_04278 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 1.5e-07 61.2 332 22.6
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 2.0e-07 60.8 139 28.8
Lj3g0009121 Lotus japonicus HOM05D002440 ORTHO05D002576 3.4e-07 60.1 121 33.9
THA.LOC104817031 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 3.4e-07 60.1 125 29.6
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 4.5e-07 59.7 126 34.1
Lalb_Chr10g0096721 Lupinus albus HOM05D002440 ORTHO05D002576 4.5e-07 59.7 112 32.1
MELO3C006091.2 Cucumis melo HOM05D002440 ORTHO05D002576 5.9e-07 59.3 313 24.9
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 7.7e-07 58.9 138 31.2
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 7.7e-07 58.9 138 31.2
CiPaw.01G065100 Carya illinoinensis HOM05D002440 ORTHO05D002576 7.7e-07 58.9 108 32.4
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 1.0e-06 58.5 138 31.2
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 1.0e-06 58.5 300 22.3
Thhalv10008079m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 1.3e-06 58.2 136 31.6
TPR.G19397 Trifolium pratense HOM05D002440 ORTHO05D002576 1.3e-06 58.2 125 32.0
CsaV3_3G008740 Cucumis sativus L. HOM05D002440 ORTHO05D002576 2.2e-06 57.4 122 28.7
SalBow1G2857 Salvia bowleyana HOM05D007109 ORTHO05D008813 2.9e-06 57.0 68 42.6
THA.LOC104801398 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 2.9e-06 57.0 122 29.5
Ciclev10020322m.g Citrus clementina HOM05D002440 ORTHO05D002576 3.8e-06 56.6 314 24.2
Sed0020411 Sechium edule HOM05D002440 ORTHO05D002576 8.5e-06 55.5 108 30.6


User provided reference genes

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