Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.4e-34 148.3 76 100.0
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 1.4e-13 79.3 90 54.4
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 3.1e-13 78.2 86 48.8
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.4e-12 74.3 83 50.6
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.8e-12 73.9 77 49.4
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.6e-12 73.6 89 50.6
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 9.9e-12 73.2 85 49.4
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.3e-11 72.8 77 48.1
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.2e-11 72.0 74 50.0
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.9e-11 71.6 81 58.0
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.9e-11 71.6 74 50.0
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.9e-11 71.6 88 50.0
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.8e-11 71.2 74 50.0
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 4.9e-11 70.9 77 54.5
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 6.4e-11 70.5 96 40.6
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.1e-10 69.7 51 66.7
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 1.1e-10 69.7 75 53.3
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.4e-10 69.3 89 46.1
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.4e-10 69.3 90 48.9
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.4e-10 69.3 84 54.8
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.9e-10 68.9 80 53.8
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.4e-10 68.6 76 48.7
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 3.2e-10 68.2 72 52.8
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 3.2e-10 68.2 88 52.3
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 3.2e-10 68.2 87 44.8
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 4.1e-10 67.8 86 45.3
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 5.4e-10 67.4 87 50.6
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 7.1e-10 67.0 76 57.9
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.1e-10 67.0 88 44.3
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 9.2e-10 66.6 80 51.2
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 9.2e-10 66.6 39 74.4
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 9.2e-10 66.6 75 48.0
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.2e-09 66.2 38 76.3
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.2e-09 66.2 38 76.3
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.2e-09 66.2 38 76.3
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.2e-09 66.2 49 65.3
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.2e-09 66.2 85 44.7
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.2e-09 66.2 87 44.8
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.6e-09 65.9 89 43.8
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.6e-09 65.9 32 87.5
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.6e-09 65.9 48 66.7
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 2.1e-09 65.5 89 43.8
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.1e-09 65.5 94 44.7
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 2.7e-09 65.1 89 46.1
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 2.7e-09 65.1 78 44.9
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 3.5e-09 64.7 86 43.0
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 3.5e-09 64.7 32 87.5
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.5e-09 64.7 94 43.6
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.5e-09 64.7 90 42.2
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 6.0e-09 63.9 32 87.5
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 7.8e-09 63.5 32 84.4
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 7.8e-09 63.5 80 48.8
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 7.8e-09 63.5 59 52.5
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.0e-08 63.2 83 43.4
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.0e-08 63.2 70 48.6
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.0e-08 63.2 44 61.4
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.0e-08 63.2 82 45.1
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 1.3e-08 62.8 61 54.1
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.3e-08 62.8 90 38.9
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 1.7e-08 62.4 31 87.1
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 1.7e-08 62.4 60 51.7
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.7e-08 62.4 84 50.0
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.7e-08 62.4 87 42.5
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 2.3e-08 62.0 94 40.4
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 2.3e-08 62.0 94 40.4
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 2.3e-08 62.0 85 50.6
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 2.3e-08 62.0 79 45.6
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.3e-08 62.0 80 52.5
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 3.0e-08 61.6 62 51.6
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 3.0e-08 61.6 62 51.6
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 3.0e-08 61.6 32 81.2
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.0e-08 61.6 77 44.2
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 3.0e-08 61.6 45 60.0
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 3.0e-08 61.6 45 60.0
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.0e-08 61.6 74 40.5
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.0e-08 61.6 74 40.5
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 3.0e-08 61.6 32 81.2
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 3.0e-08 61.6 32 81.2
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.1e-08 60.8 32 81.2
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 5.1e-08 60.8 53 52.8
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 6.6e-08 60.5 32 84.4
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 6.6e-08 60.5 76 50.0
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 6.6e-08 60.5 32 81.2
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 6.6e-08 60.5 74 51.4
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 6.6e-08 60.5 74 45.9
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 6.6e-08 60.5 63 52.4
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 6.6e-08 60.5 32 78.1
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 6.6e-08 60.5 32 78.1
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 6.6e-08 60.5 32 78.1
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 8.7e-08 60.1 82 45.1
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 8.7e-08 60.1 76 50.0
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 8.7e-08 60.1 38 65.8
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 1.1e-07 59.7 30 86.7
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 1.1e-07 59.7 30 86.7
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 1.1e-07 59.7 32 78.1
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.1e-07 59.7 32 78.1
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.1e-07 59.7 83 44.6
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.1e-07 59.7 38 65.8
CSS0025582 Camellia sinensis var. sinensis HOM05D003654 ORTHO05D004176 1.5e-07 59.3 89 47.2
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.5e-07 59.3 32 75.0
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.5e-07 59.3 32 75.0
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.5e-07 59.3 32 75.0
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.5e-07 59.3 32 78.1
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.5e-07 59.3 84 41.7
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 1.9e-07 58.9 46 63.0
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 1.9e-07 58.9 83 50.6
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 1.9e-07 58.9 85 50.6
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.9e-07 58.9 32 75.0
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 2.5e-07 58.5 84 46.4
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.5e-07 58.5 80 40.0
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.5e-07 58.5 32 75.0
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.5e-07 58.5 58 51.7
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 2.5e-07 58.5 76 44.7
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.5e-07 58.5 32 75.0
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 3.3e-07 58.2 30 83.3
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 3.3e-07 58.2 30 83.3
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 3.3e-07 58.2 30 83.3
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 3.3e-07 58.2 30 83.3
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 3.3e-07 58.2 74 41.9
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 3.3e-07 58.2 91 38.5
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.3e-07 58.2 76 47.4
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.3e-07 58.2 32 71.9
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.3e-07 58.2 32 71.9
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 3.3e-07 58.2 84 46.4
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 3.3e-07 58.2 32 78.1
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 4.3e-07 57.8 30 83.3
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 4.3e-07 57.8 32 78.1
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.3e-07 57.8 80 48.8
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.3e-07 57.8 32 68.8
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.3e-07 57.8 32 78.1
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 4.3e-07 57.8 57 49.1
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 5.6e-07 57.4 89 40.4
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 5.6e-07 57.4 74 41.9
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 5.6e-07 57.4 76 44.7
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 5.6e-07 57.4 32 71.9
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 7.3e-07 57.0 32 78.1
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.3e-07 57.0 32 71.9
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 7.3e-07 57.0 85 45.9
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 9.6e-07 56.6 49 55.1
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 9.6e-07 56.6 39 64.1
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 9.6e-07 56.6 32 75.0
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 9.6e-07 56.6 47 55.3
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 9.6e-07 56.6 90 45.6
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.2e-06 56.2 49 57.1
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 1.2e-06 56.2 70 42.9
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.2e-06 56.2 48 54.2
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.2e-06 56.2 75 41.3
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.6e-06 55.8 32 71.9
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.6e-06 55.8 31 74.2
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 2.1e-06 55.5 30 76.7
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 3.6e-06 54.7 54 59.3
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.6e-06 54.7 30 80.0
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.6e-06 54.7 29 82.8
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 4.7e-06 54.3 29 82.8
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.2e-06 53.9 32 71.9
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 6.2e-06 53.9 77 42.9
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 6.2e-06 53.9 32 68.8
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 8.1e-06 53.5 74 41.9
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 8.1e-06 53.5 72 38.9
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 8.1e-06 53.5 73 42.5
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 8.1e-06 53.5 30 73.3
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 8.1e-06 53.5 79 41.8


User provided reference genes

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