Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 0.0e+00 2251.9 1159 100.0
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 0.0e+00 1691.0 1165 75.2
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 0.0e+00 1647.1 1166 72.7
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 0.0e+00 1636.3 1217 70.3
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 0.0e+00 1610.9 1163 71.6
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 0.0e+00 1608.2 1162 71.4
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1606.7 1167 70.6
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 0.0e+00 1595.5 1163 71.3
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 0.0e+00 1561.6 1162 69.9
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 0.0e+00 1555.4 1153 68.9
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 0.0e+00 1549.3 1166 68.8
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 0.0e+00 1539.2 1163 69.2
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 0.0e+00 1537.7 1162 67.5
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 0.0e+00 1537.3 1161 68.1
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1536.9 1166 68.1
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 0.0e+00 1534.6 1163 67.8
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1531.9 1162 68.5
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 0.0e+00 1529.2 1163 68.6
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 0.0e+00 1520.8 1162 67.9
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1517.7 1162 67.7
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 0.0e+00 1512.7 1151 67.6
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1511.1 1162 67.8
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 0.0e+00 1507.7 1048 73.0
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 0.0e+00 1505.7 1162 67.3
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 0.0e+00 1504.2 1165 66.4
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 0.0e+00 1503.8 1166 67.9
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 0.0e+00 1494.9 1162 66.4
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 0.0e+00 1494.2 1164 65.6
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 0.0e+00 1493.8 1164 66.1
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1492.6 1162 65.8
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 0.0e+00 1489.2 1162 65.9
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 0.0e+00 1486.1 1162 66.7
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 0.0e+00 1485.3 1160 66.6
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1484.5 1162 67.1
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 0.0e+00 1484.2 1164 65.9
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 0.0e+00 1479.5 1163 65.6
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1478.8 1162 66.4
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 0.0e+00 1474.5 1115 68.5
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 0.0e+00 1472.2 1355 59.6
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 0.0e+00 1471.1 1162 64.3
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1470.3 1162 64.3
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 0.0e+00 1469.9 1162 64.5
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 0.0e+00 1469.1 1216 64.6
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 0.0e+00 1468.4 1155 64.8
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 1468.4 1162 64.4
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1468.0 1193 64.9
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 0.0e+00 1467.2 1162 64.4
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1466.4 1193 64.8
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 0.0e+00 1466.1 1162 64.3
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 1465.3 1162 64.4
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 0.0e+00 1459.9 1062 69.6
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 0.0e+00 1459.5 1162 64.3
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 0.0e+00 1459.1 1175 63.7
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 0.0e+00 1456.4 1161 64.8
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1454.5 1107 67.5
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1453.3 1164 64.0
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1443.7 1163 63.9
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 0.0e+00 1440.2 1164 64.2
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 0.0e+00 1438.3 1179 63.3
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1435.2 1163 63.5
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 0.0e+00 1432.5 1162 63.6
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1431.8 1162 63.6
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 0.0e+00 1431.0 1162 64.9
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 0.0e+00 1421.0 1159 63.4
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 0.0e+00 1421.0 1100 66.2
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1417.1 1162 64.5
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 0.0e+00 1416.7 1139 64.4
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 0.0e+00 1409.0 1145 63.8
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1407.5 1208 62.5
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1389.8 1064 66.5
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 0.0e+00 1387.1 1163 62.1
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 0.0e+00 1385.5 1162 61.4
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1381.3 1163 62.1
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1360.5 1168 61.0
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1356.7 1183 62.0
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 0.0e+00 1353.6 1161 60.9
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1327.8 1160 60.4
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1321.2 1162 60.5
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 0.0e+00 1294.3 1167 58.7
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1279.6 1011 64.6
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 0.0e+00 1189.5 918 64.6
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 0.0e+00 1181.0 864 70.1
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 0.0e+00 1139.0 1159 53.1
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 0.0e+00 1135.9 1157 52.3
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 0.0e+00 1087.8 782 71.9
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 7.9e-312 1074.7 793 69.7
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 1.3e-309 1066.6 1179 49.7
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.9e-303 1046.2 1178 48.6
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 1.8e-290 1003.0 828 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 1.2e-289 1000.3 1109 49.1
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 7.7e-273 944.5 715 69.1
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 1.0e-264 917.5 1212 46.5
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 1.0e-253 880.9 714 65.8
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.6e-246 857.1 1169 43.1
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 3.2e-239 832.8 630 67.5
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 5.4e-226 788.9 1201 39.4
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 1.6e-201 707.6 829 47.2
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 8.7e-192 675.2 465 72.7
SalBow6G5354 Salvia bowleyana HOM05D000329 ORTHO05D005330 6.2e-190 669.1 441 77.1
Hma1.2p1_1512F.1_g287930 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 1.2e-180 638.3 432 74.8
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 1.6e-174 617.8 534 61.8
Nitab4.5_0003285g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 8.2e-166 589.0 516 62.6
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.4e-165 588.2 466 65.5
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.9e-162 577.8 1147 34.8
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 2.1e-161 574.3 447 65.3
Hma1.2p1_1512F.1_g287950 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 3.0e-160 570.5 480 63.5
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.6e-158 564.7 819 41.3
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.6e-158 564.7 819 41.3
CAN.G155.4 Capsicum annuum HOM05D000329 ORTHO05D005330 3.1e-133 480.7 333 72.1
DCAR_000980 Daucus carota HOM05D000329 ORTHO05D005330 1.8e-128 464.9 409 60.4
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 7.5e-127 459.5 326 67.8
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.7e-123 448.4 333 70.3
CDE08G1568 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 2.2e-123 448.0 456 53.1
Haze_04432 Corylus avellana HOM05D000329 ORTHO05D005330 7.0e-109 399.8 316 63.6
Haze_04433 Corylus avellana HOM05D000329 ORTHO05D005330 1.2e-105 389.0 273 73.6
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 1.1e-101 375.9 268 70.9
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 1.5e-98 365.5 592 40.4
ClCG06G009480 Citrullus lanatus HOM05D000329 ORTHO05D005330 4.7e-97 360.5 362 56.6
Nitab4.5_0000432g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.7e-94 352.1 253 72.3
Hma1.2p1_3491F.1_g336370 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 2.7e-84 318.2 213 70.9
arahy.Tifrunner.gnm1.ann1.I5XT77 Arachis hypogaea HOM05D000329 ORTHO05D005330 6.9e-80 303.5 255 63.5
HPP92_025571 Vanilla planifolia HOM05D000329 ORTHO05D005330 1.5e-79 302.4 325 49.2
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 4.2e-77 294.3 283 55.1
MBI10_g44932_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D005330 4.6e-76 290.8 444 42.6
Haze_04431 Corylus avellana HOM05D000329 ORTHO05D005330 2.4e-72 278.5 200 72.0
ClCG06G009470 Citrullus lanatus HOM05D000329 ORTHO05D005330 6.0e-68 263.8 200 64.0
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.0e-67 261.5 270 53.3
Hma1.2p1_3491F.1_g336380 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 6.7e-67 260.4 228 61.0
Haze_04430 Corylus avellana HOM05D000329 ORTHO05D005330 1.6e-65 255.8 187 64.7
SEGI_29711 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 9.0e-64 250.0 258 50.4
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.4e-63 248.1 222 58.1
HPP92_025621 Vanilla planifolia HOM05D000329 ORTHO05D005330 4.9e-62 244.2 233 52.8
QL93p0164_0019 Quercus lobata HOM05D000329 ORTHO05D005330 3.3e-58 231.5 164 66.5
Nitab4.5_0000432g0110 Nicotiana tabacum HOM05D000329 ORTHO05D005330 5.6e-58 230.7 153 73.9
Cre09.g404350 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D005330 3.1e-56 224.9 1082 23.9
HanXRQChr14g0434591 Helianthus annuus HOM05D000329 ORTHO05D005330 8.4e-54 216.9 178 60.7
Nitab4.5_0025717g0010 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.3e-51 209.5 243 50.6
Rhsim05G0128300 Rhododendron simsii HOM05D000329 ORTHO05D005330 9.7e-50 203.4 493 34.9
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 9.0e-48 196.8 180 56.7
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 9.0e-48 196.8 180 56.7
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 1.0e-43 183.3 1202 22.5
Sed0005472 Sechium edule HOM05D000329 ORTHO05D005330 1.3e-38 166.4 170 51.8
BcaB04g19325 Brassica carinata HOM05D000329 ORTHO05D005330 6.7e-35 154.1 174 49.4
ClCG06G009450 Citrullus lanatus HOM05D000329 ORTHO05D005330 6.1e-28 131.0 84 78.6
Cpa.g.sc162.42 Carica papaya HOM05D000329 ORTHO05D028196 1.8e-27 129.4 84 78.6
Haze_05933 Corylus avellana HOM05D000329 ORTHO05D005330 3.3e-26 125.2 83 74.7
SHI23197 Sapria himalayana HOM05D000329 ORTHO05D005330 2.4e-24 119.0 156 41.0
Rhsim10G0071600 Rhododendron simsii HOM05D000329 ORTHO05D005330 1.7e-22 112.8 82 65.9
Solyc12g027560.1 Solanum lycopersicum HOM05D000329 ORTHO05D005330 2.9e-22 112.1 79 68.4
AT4G38092 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 2.0e-18 99.4 82 59.8
SHI23201 Sapria himalayana HOM05D000329 ORTHO05D005330 9.7e-18 97.1 79 63.3
Sed0009230 Sechium edule HOM05D000329 ORTHO05D028196 6.3e-17 94.4 79 65.8
SHI23198 Sapria himalayana HOM05D005377 ORTHO05D003034 2.0e-15 89.4 61 60.7
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 2.5e-13 82.4 42 92.9
Cfa012903 Carpinus fangiana HOM05D000329 ORTHO05D005330 2.7e-12 79.0 80 53.8
SHI23206 Sapria himalayana HOM05D000329 ORTHO05D005330 1.4e-11 76.6 78 56.4
Lsat_1_v5_gn_7_52080 Lactuca sativa HOM05D001785 ORTHO05D001150 2.0e-10 72.8 46 71.7
COL.COLO4_15480 Corchorus olitorius HOM05D000329 ORTHO05D005330 4.4e-10 71.6 92 45.7
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 9.8e-10 70.5 95 43.2
Lsat_1_v5_gn_7_52100 Lactuca sativa HOM05D000329 ORTHO05D005330 1.4e-08 66.6 85 40.0
Lsat_1_v5_gn_8_51680 Lactuca sativa HOM05D000144 ORTHO05D005330 1.8e-08 66.2 80 45.0
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 1.8e-08 66.2 366 23.2
Lsat_1_v5_gn_2_33241 Lactuca sativa HOM05D000329 ORTHO05D005330 7.0e-08 64.3 126 36.5
Lsat_1_v5_gn_7_55340 Lactuca sativa HOM05D000144 ORTHO05D005330 1.2e-07 63.5 39 71.8
A06p19390 Brassica napus HOM05D000329 ORTHO05D028196 8.6e-06 57.4 39 69.2


User provided reference genes

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