Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.3e-266 922.5 474 100.0
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 8.5e-178 627.5 375 87.7
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 4.2e-169 598.6 359 84.7
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.7e-167 591.3 359 84.7
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.7e-167 591.3 359 84.7
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 8.8e-167 590.9 359 84.1
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 2.0e-166 589.7 359 85.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 2.6e-166 589.3 359 83.8
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 5.7e-166 588.2 359 83.8
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 9.7e-166 587.4 359 83.3
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.8e-165 585.9 359 83.3
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 4.8e-165 585.1 359 84.1
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.1e-164 583.9 359 82.7
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 1.4e-164 583.6 359 83.3
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.4e-164 582.8 359 82.7
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.2e-163 580.5 359 83.0
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 2.6e-163 579.3 359 83.0
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 2.6e-163 579.3 359 82.7
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 2.6e-163 579.3 359 83.3
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.5e-163 578.9 359 82.5
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.5e-163 578.9 359 83.0
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 4.5e-163 578.6 361 81.2
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 5.9e-163 578.2 359 82.5
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.9e-163 578.2 359 83.0
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 7.7e-163 577.8 359 83.6
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 7.7e-163 577.8 359 83.3
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 7.7e-163 577.8 359 83.6
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.0e-162 577.4 359 82.2
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.3e-162 577.0 359 82.7
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.7e-162 576.6 359 82.5
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 1.7e-162 576.6 359 82.5
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.0e-162 575.1 374 79.7
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 6.5e-162 574.7 359 83.0
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.5e-161 573.5 359 81.6
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.5e-161 573.5 370 79.5
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.5e-161 572.8 362 83.1
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 3.2e-161 572.4 359 81.9
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 3.2e-161 572.4 359 81.3
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 5.5e-161 571.6 359 81.6
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 7.2e-161 571.2 396 75.8
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 9.4e-161 570.9 359 81.3
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 9.4e-161 570.9 359 81.3
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 9.4e-161 570.9 359 80.8
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 2.1e-160 569.7 359 79.9
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 6.1e-160 568.2 359 81.6
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 8.0e-160 567.8 359 79.7
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.0e-159 567.4 359 80.2
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 2.3e-159 566.2 359 81.1
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.0e-159 565.8 359 81.3
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.0e-159 565.5 382 78.0
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 4.0e-159 565.5 359 81.3
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 5.2e-159 565.1 359 79.4
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 6.7e-159 564.7 359 81.1
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 6.7e-159 564.7 359 81.6
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.2e-158 563.9 359 81.1
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.0e-158 563.1 359 79.9
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.0e-158 563.1 359 80.5
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.6e-158 562.8 367 78.5
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 3.3e-158 562.4 359 80.8
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.3e-157 560.5 359 79.7
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.7e-157 560.1 359 80.2
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 3.7e-157 558.9 359 79.1
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 4.8e-157 558.5 359 79.7
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.1e-156 557.4 359 79.7
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.1e-156 557.4 359 79.1
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.4e-156 557.0 359 79.7
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 2.4e-156 556.2 359 79.7
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 4.1e-156 555.4 359 79.4
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 4.1e-156 555.4 359 79.1
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 7.0e-156 554.7 359 78.8
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 7.0e-156 554.7 395 74.4
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.2e-155 553.9 359 79.4
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.6e-155 553.5 359 78.8
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 2.7e-155 552.7 359 78.3
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 2.7e-155 552.7 359 79.1
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.7e-155 552.7 344 81.7
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 2.7e-155 552.7 359 78.8
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 4.5e-155 552.0 359 78.8
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 5.9e-155 551.6 359 78.8
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 5.9e-155 551.6 359 78.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 5.9e-155 551.6 370 75.9
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 7.7e-155 551.2 359 78.3
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 7.7e-155 551.2 359 77.4
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.0e-154 550.8 359 78.6
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.3e-154 550.4 359 79.7
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.3e-154 550.4 379 76.3
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.2e-154 549.7 359 78.3
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.2e-154 549.7 359 78.8
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 2.9e-154 549.3 359 78.0
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 3.8e-154 548.9 359 78.6
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 5.0e-154 548.5 359 77.7
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 6.5e-154 548.1 359 77.7
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 8.5e-154 547.7 359 78.3
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 8.5e-154 547.7 359 78.0
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 8.5e-154 547.7 359 77.4
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 1.1e-153 547.4 359 78.3
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.5e-153 547.0 359 78.0
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 5.5e-153 545.0 359 78.3
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 5.5e-153 545.0 359 78.3
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.5e-153 545.0 414 71.5
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 7.2e-153 544.7 359 76.3
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 7.2e-153 544.7 359 78.6
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.2e-152 543.9 359 78.0
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.2e-152 543.9 359 78.3
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 2.1e-152 543.1 359 78.0
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 2.7e-152 542.7 359 77.7
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 1.4e-151 540.4 341 81.2
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.5e-150 537.0 359 78.0
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.3e-149 533.9 359 74.4
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 2.2e-149 533.1 359 76.9
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 2.8e-149 532.7 359 74.4
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 2.4e-148 529.6 329 79.9
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.3e-146 523.1 397 70.3
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.5e-145 520.4 359 76.6
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.9e-145 520.0 359 75.2
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 4.2e-145 518.8 335 77.3
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 2.1e-144 516.5 359 72.4
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.7e-141 506.9 379 70.2
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.8e-140 503.4 361 74.0
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 5.2e-135 485.3 329 72.0
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 2.6e-134 483.0 295 82.4
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.7e-133 479.2 295 81.7
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 4.1e-124 449.1 359 63.8
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.1e-121 441.0 359 63.8
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.1e-120 436.8 359 67.1
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 7.5e-118 428.3 366 61.5
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.0e-106 391.3 240 81.2
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 2.9e-101 373.2 251 76.1
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 9.3e-100 368.2 219 81.7
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 3.5e-99 366.3 219 81.3
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 1.7e-98 364.0 363 53.7
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 3.9e-98 362.8 219 80.8
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 4.6e-91 339.3 359 49.9
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.0e-90 336.7 218 74.8
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.4e-84 317.8 182 85.7
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 3.0e-82 310.1 219 74.0
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.1e-68 265.0 178 79.8
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 3.3e-65 253.4 154 79.9
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 9.4e-60 235.3 154 72.7
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.7e-48 198.0 152 67.1
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-47 194.5 147 70.1
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.5e-36 158.3 118 68.6
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 4.2e-36 156.8 112 74.1
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 8.0e-35 152.5 119 67.2
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 6.3e-32 142.9 89 78.7
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 4.3e-20 103.6 125 46.4
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.0e-17 94.7 106 56.6
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 4.9e-08 63.5 53 56.6
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 1.4e-07 62.0 111 35.1


User provided reference genes

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