Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.5e-171 606.3 357 100.0
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 5.7e-94 348.6 337 69.7
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 3.8e-82 309.3 327 66.4
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 9.5e-81 304.7 325 60.6
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 2.6e-78 296.6 337 62.6
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 7.5e-78 295.0 337 61.4
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.7e-77 293.9 340 61.5
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 3.7e-77 292.7 336 61.9
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 4.9e-77 292.4 341 56.0
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.4e-76 290.0 337 62.3
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.4e-76 288.9 339 61.4
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 4.6e-75 285.8 338 59.8
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.0e-74 284.6 342 60.2
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.3e-74 284.3 340 59.7
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 3.0e-74 283.1 345 59.7
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 7.3e-73 278.5 341 58.4
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 4.7e-72 275.8 318 61.6
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.4e-70 269.6 339 55.2
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 9.8e-70 268.1 344 53.5
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.2e-69 266.9 338 57.1
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 6.0e-67 258.8 359 47.4
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 8.6e-66 255.0 341 58.9
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.6e-66 255.0 331 52.3
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.1e-65 254.6 339 53.1
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 2.5e-65 253.4 343 57.1
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.5e-65 253.4 329 53.2
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 2.5e-65 253.4 329 56.8
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 5.6e-65 252.3 331 55.6
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 7.3e-65 251.9 344 54.1
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 3.6e-64 249.6 340 52.1
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 2.0e-62 243.8 437 44.6
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 2.0e-62 243.8 334 50.9
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 2.6e-62 243.4 333 55.9
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 2.6e-62 243.4 341 56.6
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 5.8e-62 242.3 332 52.7
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 7.5e-62 241.9 330 48.2
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.3e-61 241.1 339 54.0
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.7e-61 240.7 337 51.9
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.7e-61 240.7 332 52.7
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 5.4e-60 235.7 339 54.9
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 7.1e-60 235.3 328 57.0
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 7.1e-60 235.3 328 56.7
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 9.2e-60 235.0 298 54.0
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.6e-59 234.2 339 51.3
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 1.6e-59 234.2 334 46.4
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 2.1e-59 233.8 339 51.9
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 2.7e-59 233.4 338 50.9
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.5e-59 233.0 328 57.0
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 7.8e-59 231.9 346 54.0
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.3e-58 231.1 336 46.7
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.3e-58 231.1 317 54.6
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.7e-58 230.7 337 54.6
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.1e-58 229.2 344 54.4
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 8.6e-58 228.4 339 49.3
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 8.6e-58 228.4 342 51.5
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 8.6e-58 228.4 326 56.7
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.9e-57 227.3 331 49.2
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 7.3e-57 225.3 334 47.3
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 2.1e-56 223.8 344 52.6
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 4.7e-56 222.6 337 52.5
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 8.1e-56 221.9 334 50.3
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 8.1e-56 221.9 333 51.7
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 8.9e-55 218.4 374 45.2
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 2.6e-54 216.9 330 50.3
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 2.6e-54 216.9 299 47.8
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 7.6e-54 215.3 276 59.8
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.7e-53 214.2 336 50.3
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.7e-53 214.2 332 50.9
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.1e-52 211.5 278 56.5
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.4e-52 211.1 338 47.3
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 4.1e-52 209.5 345 45.2
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 9.2e-52 208.4 331 42.9
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.2e-51 208.0 336 53.0
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.7e-51 206.8 333 45.0
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 7.8e-51 205.3 326 46.6
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 1.0e-50 204.9 335 44.5
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.9e-50 203.0 340 49.4
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 1.9e-49 200.7 508 39.8
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.5e-49 200.3 302 54.0
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 5.6e-49 199.1 300 47.3
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 9.6e-49 198.4 282 58.2
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 2.8e-48 196.8 297 45.5
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.5e-46 191.0 344 44.2
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 2.0e-46 190.7 346 47.7
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.6e-46 188.7 246 53.3
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.1e-44 184.9 333 43.2
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 4.2e-44 183.0 255 58.0
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 4.6e-43 179.5 320 45.9
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 4.6e-43 179.5 299 49.2
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.0e-42 178.3 322 40.7
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.0e-42 178.3 336 44.6
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.3e-42 177.9 287 43.6
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 8.7e-42 175.3 348 40.5
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 5.6e-41 172.6 335 39.7
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 5.6e-41 172.6 332 39.5
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.3e-40 171.4 331 40.2
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.8e-40 170.2 296 38.9
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.8e-39 167.5 255 56.5
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.8e-39 167.5 309 46.6
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 5.3e-39 166.0 280 50.7
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.0e-38 164.1 334 38.0
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.0e-38 164.1 334 38.0
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 2.2e-37 160.6 331 38.1
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 4.9e-37 159.5 343 41.4
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.2e-36 156.8 278 42.4
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 5.4e-36 156.0 257 52.5
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 7.1e-36 155.6 343 37.6
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.2e-35 154.8 334 43.4
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.2e-35 154.8 226 53.1
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 2.1e-35 154.1 230 46.5
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.0e-34 151.8 335 35.8
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.8e-34 151.0 310 36.5
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 3.3e-33 146.7 355 34.1
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.3e-32 144.8 288 37.8
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 1.6e-32 144.4 340 42.6
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 6.2e-32 142.5 305 35.1
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 8.1e-32 142.1 337 35.0
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 2.4e-31 140.6 347 37.8
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 2.0e-30 137.5 290 36.2
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 3.4e-30 136.7 280 35.0
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 9.9e-30 135.2 337 35.3
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 2.1e-27 127.5 278 39.9
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 2.7e-27 127.1 224 40.2
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 3.0e-26 123.6 320 33.8
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.9e-26 123.2 124 63.7
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 1.8e-23 114.4 107 60.7
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.0e-21 108.6 115 60.0
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 1.1e-20 105.1 327 33.9
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.2e-19 101.7 329 32.8
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 3.0e-18 97.1 191 36.1
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 3.3e-17 93.6 213 34.7
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 4.3e-17 93.2 191 42.4
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 7.4e-17 92.4 371 32.1
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.6e-16 91.3 103 58.3
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 2.8e-16 90.5 96 56.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.7e-16 90.1 276 42.0
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 1.1e-15 88.6 87 59.8
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.4e-15 87.4 155 40.6
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.2e-13 80.9 289 27.7
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.3e-10 70.9 86 50.0
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 4.3e-09 66.6 80 46.2
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 2.4e-07 60.8 74 50.0
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.2e-06 58.5 111 38.7
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.5e-06 58.2 90 46.7


User provided reference genes

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