Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 7.7e-71 270.4 139 100.0
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 5.6e-21 104.8 79 63.3
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 5.6e-21 104.8 79 64.6
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 5.6e-21 104.8 79 63.3
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 9.6e-21 104.0 79 63.3
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 9.6e-21 104.0 79 62.0
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 9.6e-21 104.0 79 63.3
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 1.2e-20 103.6 79 62.0
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.2e-20 103.6 79 62.0
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.2e-20 103.6 79 62.0
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 2.1e-20 102.8 79 62.0
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 2.8e-20 102.4 79 62.0
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 4.7e-20 101.7 79 60.8
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 4.7e-20 101.7 79 60.8
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 4.7e-20 101.7 79 60.8
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 4.7e-20 101.7 79 60.8
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 4.7e-20 101.7 79 60.8
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 4.7e-20 101.7 79 60.8
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 4.7e-20 101.7 79 60.8
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 6.2e-20 101.3 79 60.8
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 8.1e-20 100.9 79 62.0
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 8.1e-20 100.9 79 62.0
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 8.1e-20 100.9 79 59.5
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.1e-19 100.5 79 59.5
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.1e-19 100.5 79 59.5
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 1.4e-19 100.1 79 59.5
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 1.8e-19 99.8 79 59.5
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.8e-19 99.8 79 60.8
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 1.8e-19 99.8 79 60.8
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 1.8e-19 99.8 79 60.8
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 2.4e-19 99.4 85 55.3
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 2.4e-19 99.4 79 57.0
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 2.4e-19 99.4 79 59.5
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 3.1e-19 99.0 79 59.5
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 3.1e-19 99.0 79 58.2
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 3.1e-19 99.0 79 58.2
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 3.1e-19 99.0 79 59.5
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 4.0e-19 98.6 79 59.5
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.0e-19 98.6 79 58.2
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.0e-19 98.6 79 58.2
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 4.0e-19 98.6 79 58.2
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 4.0e-19 98.6 79 58.2
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 5.2e-19 98.2 79 59.5
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 5.2e-19 98.2 79 58.2
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 5.2e-19 98.2 79 58.2
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 6.8e-19 97.8 79 57.0
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 6.8e-19 97.8 79 58.2
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 6.8e-19 97.8 79 60.8
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.9e-19 97.4 79 58.2
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.9e-19 97.4 79 58.2
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 8.9e-19 97.4 79 58.2
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 1.2e-18 97.1 79 57.0
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 1.2e-18 97.1 79 59.5
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.5e-18 96.7 79 55.7
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 1.5e-18 96.7 79 58.2
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.5e-18 96.7 79 57.0
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.5e-18 96.7 79 58.2
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.5e-18 96.7 79 58.2
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 2.0e-18 96.3 79 55.7
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 2.0e-18 96.3 79 55.7
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 2.0e-18 96.3 79 55.7
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.4e-18 95.5 79 58.2
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.4e-18 95.5 79 58.2
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.4e-18 95.5 79 58.2
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.4e-18 95.5 79 58.2
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 3.4e-18 95.5 79 58.2
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 3.4e-18 95.5 79 55.7
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 3.4e-18 95.5 79 58.2
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 4.4e-18 95.1 79 54.4
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 5.8e-18 94.7 79 57.0
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 5.8e-18 94.7 79 57.0
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 5.8e-18 94.7 79 55.7
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 7.6e-18 94.4 79 54.4
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 7.6e-18 94.4 79 54.4
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 7.6e-18 94.4 79 57.0
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 9.9e-18 94.0 79 55.7
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 1.3e-17 93.6 79 53.2
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 1.3e-17 93.6 78 57.7
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 1.3e-17 93.6 79 57.0
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.3e-17 93.6 79 53.2
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.7e-17 93.2 79 53.2
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.7e-17 93.2 79 54.4
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.7e-17 93.2 79 54.4
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.7e-17 93.2 79 54.4
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.7e-17 93.2 79 54.4
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.7e-17 93.2 79 55.7
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 1.7e-17 93.2 79 53.2
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.7e-17 93.2 79 55.7
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 2.2e-17 92.8 79 59.5
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 2.9e-17 92.4 79 53.2
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 2.9e-17 92.4 79 54.4
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 3.8e-17 92.0 79 53.2
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 3.8e-17 92.0 79 57.0
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 4.9e-17 91.7 79 51.9
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.9e-17 91.7 79 53.2
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.9e-17 91.7 79 53.2
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 6.4e-17 91.3 79 53.2
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 1.1e-16 90.5 79 53.2
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.4e-16 90.1 79 54.4
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.4e-16 90.1 79 54.4
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 1.4e-16 90.1 79 54.4
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.9e-16 89.7 79 54.4
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 4.2e-16 88.6 79 54.4
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 4.2e-16 88.6 79 50.6
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 4.2e-16 88.6 79 51.9
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 4.2e-16 88.6 79 51.9
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 7.1e-16 87.8 79 53.2
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 7.1e-16 87.8 79 53.2
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 7.1e-16 87.8 71 57.7
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 7.1e-16 87.8 71 57.7
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 7.1e-16 87.8 87 54.0
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 9.3e-16 87.4 85 52.9
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 2.1e-15 86.3 79 53.2
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 2.7e-15 85.9 79 50.6
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 4.6e-15 85.1 79 49.4
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.0e-14 84.0 79 49.4
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.3e-14 83.6 70 54.3
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.3e-14 83.6 80 51.2
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 1.7e-14 83.2 93 44.1
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 1.7e-14 83.2 71 54.9
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.9e-13 79.7 67 58.2
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 5.6e-13 78.2 79 46.8
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 5.6e-13 78.2 84 47.6
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 4.8e-12 75.1 80 47.5
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 6.2e-12 74.7 70 50.0
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 8.1e-12 74.3 70 50.0
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.1e-11 73.9 70 48.6
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 3.4e-10 68.9 65 50.8
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 4.4e-10 68.6 79 40.5
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 1.7e-09 66.6 69 46.4
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 2.2e-09 66.2 79 40.5
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.9e-09 65.9 69 47.8
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 6.4e-09 64.7 79 38.0
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 1.1e-08 63.9 67 47.8
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 1.4e-08 63.5 44 63.6
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.4e-08 62.8 71 47.9
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 3.2e-08 62.4 79 43.0
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 3.2e-08 62.4 69 46.4
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 4.6e-07 58.5 42 59.5
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 1.7e-06 56.6 99 31.3
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.7e-06 56.6 62 41.9
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 8.7e-06 54.3 51 49.0


User provided reference genes

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