Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014332.1 Olea europaea HOM05D004136 ORTHO05D004817 1.4e-56 222.6 109 100.0
Peaxi162Scf00003g01333 Petunia axillaris HOM05D004136 ORTHO05D004817 5.7e-29 131.0 109 57.8
SGA_v2.0_scaffold32G13150 Striga asiatica HOM05D004136 ORTHO05D004817 2.2e-28 129.0 108 56.5
Cc02_g17820 Coffea canephora HOM05D004136 ORTHO05D004817 3.7e-28 128.3 109 63.3
Migut.B00258 Erythranthe guttata HOM05D004136 ORTHO05D004817 4.8e-28 127.9 109 59.6
Nitab4.5_0005152g0080 Nicotiana tabacum HOM05D004136 ORTHO05D004817 1.8e-27 125.9 109 56.0
CSS0025580 Camellia sinensis var. sinensis HOM05D004136 ORTHO05D004817 5.4e-27 124.4 101 58.4
PGSC0003DMG400033909 Solanum tuberosum HOM05D004136 ORTHO05D004817 1.2e-26 123.2 109 54.1
MSTRG.20103 Avicennia marina HOM05D004136 ORTHO05D004817 1.6e-26 122.9 107 59.8
Nitab4.5_0001361g0200 Nicotiana tabacum HOM05D004136 ORTHO05D004817 3.5e-26 121.7 110 56.4
TAR628G0800 Trochodendron aralioides HOM05D004136 ORTHO05D004817 5.9e-26 120.9 109 55.0
TAR376G0015 Trochodendron aralioides HOM05D004136 ORTHO05D004817 1.0e-25 120.2 109 54.1
CSS0034503 Camellia sinensis var. sinensis HOM05D004136 ORTHO05D004817 3.8e-25 118.2 95 60.0
Solyc10g051300.2 Solanum lycopersicum HOM05D004136 ORTHO05D004817 3.8e-25 118.2 109 53.2
Sopen10g022980 Solanum pennellii HOM05D004136 ORTHO05D004817 3.8e-25 118.2 109 53.2
Actinidia00515 Actinidia chinensis HOM05D004136 ORTHO05D004817 2.5e-24 115.5 95 57.9
Manes.15G167200 Manihot esculenta HOM05D004136 ORTHO05D004817 3.3e-24 115.2 107 49.5
Actinidia22486 Actinidia chinensis HOM05D004136 ORTHO05D004817 5.5e-24 114.4 108 54.6
SalBow6G6921 Salvia bowleyana HOM05D004136 ORTHO05D004817 1.6e-23 112.8 104 54.8
Prupe.8G101900 Prunus persica HOM05D004136 ORTHO05D004817 2.8e-23 112.1 109 49.5
Rhsim11G0174000 Rhododendron simsii HOM05D004136 ORTHO05D004817 4.7e-23 111.3 125 50.4
RcHm_v2.0_Chr6g0263171 Rosa chinensis HOM05D004136 ORTHO05D004817 8.0e-23 110.5 109 51.4
SalBow6G5424 Salvia bowleyana HOM05D004136 ORTHO05D004817 8.0e-23 110.5 105 54.3
Atru.chr5.2955 Acer truncatum HOM05D004136 ORTHO05D004817 1.0e-22 110.2 109 49.5
QL06p045366 Quercus lobata HOM05D004136 ORTHO05D004817 1.0e-22 110.2 105 49.5
Potri.009G113400 Populus trichocarpa HOM05D004136 ORTHO05D004817 1.4e-22 109.8 109 49.5
EL10Ac9g21751 Beta vulgaris HOM05D004136 ORTHO05D004817 1.8e-22 109.4 104 48.1
vmacro02133 Vaccinium macrocarpon HOM05D004136 ORTHO05D004817 1.8e-22 109.4 107 54.2
GSVIVG01031926001 Vitis vinifera HOM05D004136 ORTHO05D004817 3.0e-22 108.6 95 56.8
CAN.G352.59 Capsicum annuum HOM05D004136 ORTHO05D004817 6.8e-22 107.5 109 50.5
MD10G1080600 Malus domestica HOM05D004136 ORTHO05D004817 1.5e-21 106.3 109 50.5
SGA_v2.0_scaffold58G20560 Striga asiatica HOM05D000001 ORTHO05D009502 2.0e-21 105.9 108 50.0
CiPaw.01G034600 Carya illinoinensis HOM05D004136 ORTHO05D004817 2.6e-21 105.5 101 49.5
Peaxi162Scf00089g00243 Petunia axillaris HOM05D004136 ORTHO05D004817 2.6e-21 105.5 109 50.5
Aqoxy6G01036 Aquilegia oxysepala HOM05D004136 ORTHO05D004817 3.4e-21 105.1 110 52.7
Hund00289 Selenicereus undatus HOM05D004136 ORTHO05D004817 4.4e-21 104.8 109 49.5
DCAR_022101 Daucus carota HOM05D004136 ORTHO05D004817 7.5e-21 104.0 109 49.5
Thecc.02G122900 Theobroma cacao HOM05D004136 ORTHO05D004817 7.5e-21 104.0 107 47.7
vmacro19436 Vaccinium macrocarpon HOM05D004136 ORTHO05D004817 7.5e-21 104.0 147 45.6
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 1.3e-20 103.2 106 48.1
Gohir.D02G202933 Gossypium hirsutum HOM05D004136 ORTHO05D004817 1.7e-20 102.8 108 46.3
Nn5g29529 Nelumbo nucifera HOM05D004136 ORTHO05D004817 1.7e-20 102.8 109 48.6
Gorai.005G228600 Gossypium raimondii HOM05D004136 ORTHO05D004817 2.2e-20 102.4 108 46.3
Solyc03g110920.2 Solanum lycopersicum HOM05D004136 ORTHO05D004817 2.2e-20 102.4 109 47.7
Sopen03g030110 Solanum pennellii HOM05D004136 ORTHO05D004817 2.2e-20 102.4 109 47.7
AUR62011354 Chenopodium quinoa HOM05D004136 ORTHO05D004817 3.7e-20 101.7 103 47.6
Gohir.A03G179700 Gossypium hirsutum HOM05D004136 ORTHO05D004817 3.7e-20 101.7 108 47.2
Ciclev10029342m.g Citrus clementina HOM05D004136 ORTHO05D004817 8.3e-20 100.5 109 46.8
Glyma.12G044900 Glycine max HOM05D004136 ORTHO05D004817 8.3e-20 100.5 105 47.6
Lsat_1_v5_gn_9_109341 Lactuca sativa HOM05D004136 ORTHO05D004817 1.4e-19 99.8 106 48.1
Lj5A200T57 Lonicera japonica HOM05D004136 ORTHO05D004817 1.4e-19 99.8 73 65.8
Nitab4.5_0001311g0020 Nicotiana tabacum HOM05D004136 ORTHO05D004817 1.8e-19 99.4 116 48.3
Nitab4.5_0011188g0010 Nicotiana tabacum HOM05D004136 ORTHO05D004817 1.8e-19 99.4 116 48.3
arahy.Tifrunner.gnm1.ann1.QP0UED Arachis hypogaea HOM05D004136 ORTHO05D004817 3.1e-19 98.6 108 47.2
Cfa004279 Carpinus fangiana HOM05D004136 ORTHO05D004817 3.1e-19 98.6 105 44.8
FvH4_2g08300 Fragaria vesca HOM05D004136 ORTHO05D004817 4.1e-19 98.2 109 46.8
FAN24G1607 Fragaria x ananassa HOM05D004136 ORTHO05D004817 4.1e-19 98.2 109 46.8
Glyma.11G119700 Glycine max HOM05D004136 ORTHO05D004817 4.1e-19 98.2 107 44.9
Lsat_1_v5_gn_9_109361 Lactuca sativa HOM05D004136 ORTHO05D004817 4.1e-19 98.2 107 47.7
Duzib248G0461 Durio zibethinus HOM05D004136 ORTHO05D004817 7.0e-19 97.4 108 44.4
Nn1g05079 Nelumbo nucifera HOM05D004136 ORTHO05D004817 7.0e-19 97.4 109 47.7
HanXRQChr08g0216581 Helianthus annuus HOM05D004136 ORTHO05D004817 9.2e-19 97.1 106 46.2
Ah.01g019590 Amaranthus hybridus HOM05D004136 ORTHO05D004817 1.6e-18 96.3 117 43.6
FAN15G1236 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.6e-18 96.3 109 45.9
Eucgr.I01252 Eucalyptus grandis HOM05D004136 ORTHO05D004817 2.7e-18 95.5 109 47.7
Sabra07G0025200 Salix brachista HOM05D004136 ORTHO05D004817 2.7e-18 95.5 109 42.2
Atru.chr3.535 Acer truncatum HOM05D004136 ORTHO05D004817 7.8e-18 94.0 96 50.0
MBI16_g35701_MAGBIO Magnolia biondii HOM05D004136 ORTHO05D004817 1.0e-17 93.6 113 45.1
FAN20G0668 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.3e-17 93.2 109 45.0
Hma1.2p1_3707F.1_g337330 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 2.3e-17 92.4 104 45.2
QL11p042830 Quercus lobata HOM05D004136 ORTHO05D004817 2.3e-17 92.4 96 45.8
Cpa.g.sc62.117 Carica papaya HOM05D004136 ORTHO05D004817 2.9e-17 92.0 109 45.0
Glyma.01G177300 Glycine max HOM05D004136 ORTHO05D004817 2.9e-17 92.0 106 41.5
Hma1.2p1_0652F.1_g195840 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 2.9e-17 92.0 67 62.7
Phvul.011G046900 Phaseolus vulgaris HOM05D004136 ORTHO05D004817 2.9e-17 92.0 106 41.5
Gorai.012G146300 Gossypium raimondii HOM05D004136 ORTHO05D004817 3.8e-17 91.7 104 44.2
Lsat_1_v5_gn_7_89700 Lactuca sativa HOM05D004136 ORTHO05D004817 3.8e-17 91.7 82 51.2
Gohir.A04G117200 Gossypium hirsutum HOM05D004136 ORTHO05D004817 5.0e-17 91.3 104 44.2
Gohir.D04G158900 Gossypium hirsutum HOM05D004136 ORTHO05D004817 5.0e-17 91.3 104 44.2
PSO675G6408 Papaver somniferum HOM05D004136 ORTHO05D004817 5.0e-17 91.3 82 52.4
Potri.007G029300 Populus trichocarpa HOM05D004136 ORTHO05D004817 5.0e-17 91.3 81 49.4
VMungo1127G1479 Vigna mungo HOM05D004136 ORTHO05D004817 5.0e-17 91.3 105 41.9
Cpa.g.sc158.6 Carica papaya HOM05D004136 ORTHO05D004817 1.1e-16 90.1 105 41.0
Duzib187G0328 Durio zibethinus HOM05D004136 ORTHO05D004817 3.3e-16 88.6 88 54.5
ECA236G4692 Erigeron canadensis HOM05D000001 ORTHO05D009502 3.3e-16 88.6 82 50.0
Glyma.11G065100 Glycine max HOM05D004136 ORTHO05D004817 3.3e-16 88.6 103 43.7
Prupe.7G150800 Prunus persica HOM05D004136 ORTHO05D004817 3.3e-16 88.6 106 45.3
Thecc.01G039800 Theobroma cacao HOM05D004136 ORTHO05D004817 3.3e-16 88.6 109 45.0
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 5.6e-16 87.8 105 42.9
Sc18g0004640 Simmondsia chinensis HOM05D004136 ORTHO05D004817 7.3e-16 87.4 110 44.5
HanXRQChr04g0127871 Helianthus annuus HOM05D004136 ORTHO05D004817 9.5e-16 87.0 82 47.6
RcHm_v2.0_Chr2g0102181 Rosa chinensis HOM05D004136 ORTHO05D004817 9.5e-16 87.0 104 43.3
CANSAT01G2667 Cannabis sativa HOM05D004136 ORTHO05D004817 1.2e-15 86.7 86 46.5
PGR119G1684 Punica granatum HOM05D004136 ORTHO05D004817 1.2e-15 86.7 68 54.4
VMungo1215G0182 Vigna mungo HOM05D004136 ORTHO05D004817 1.2e-15 86.7 93 44.1
AL7G14290 Arabidopsis lyrata HOM05D004136 ORTHO05D004817 2.1e-15 85.9 105 43.8
TWI75G0712 Tripterygium wilfordii HOM05D004136 ORTHO05D004817 2.8e-15 85.5 115 41.7
Sabra09G0086700 Salix brachista HOM05D004136 ORTHO05D004817 3.6e-15 85.1 144 35.4
BcaB03g12374 Brassica carinata HOM05D004136 ORTHO05D004817 4.7e-15 84.7 104 43.3
Sp7g34380 Schrenkiella parvula HOM05D004136 ORTHO05D004817 6.1e-15 84.3 105 42.9
Lalb_Chr05g0212951 Lupinus albus HOM05D004136 ORTHO05D004817 1.4e-14 83.2 107 38.3
Phvul.002G027400 Phaseolus vulgaris HOM05D004136 ORTHO05D004817 1.8e-14 82.8 106 39.6
BolC7t46611H Brassica oleracea HOM05D004136 ORTHO05D004817 2.3e-14 82.4 86 47.7
Sed0010733 Sechium edule HOM05D004136 ORTHO05D004817 2.3e-14 82.4 71 52.1
FAN26G1434 Fragaria x ananassa HOM05D004136 ORTHO05D004817 3.0e-14 82.0 71 47.9
Lj2g0019230 Lotus japonicus HOM05D004136 ORTHO05D004817 3.0e-14 82.0 104 40.4
A08p22370 Brassica napus HOM05D004136 ORTHO05D004817 6.8e-14 80.9 107 42.1
BraA08t34194Z Brassica rapa HOM05D004136 ORTHO05D004817 6.8e-14 80.9 107 42.1
AT4G36720 Arabidopsis thaliana HOM05D004136 ORTHO05D004817 1.5e-13 79.7 73 50.7
COL.COLO4_22117 Corchorus olitorius HOM05D004136 ORTHO05D004817 1.5e-13 79.7 74 50.0
FAN23G0822 Fragaria x ananassa HOM05D004136 ORTHO05D004817 2.0e-13 79.3 71 46.5
Carub.0007s0360 Capsella rubella HOM05D004136 ORTHO05D004817 2.6e-13 79.0 105 41.0
CsaV3_6G046090 Cucumis sativus L. HOM05D004136 ORTHO05D004817 2.6e-13 79.0 71 49.3
Thhalv10026250m.g Eutrema salsugineum HOM05D004136 ORTHO05D004817 3.4e-13 78.6 109 40.4
Sed0013019 Sechium edule HOM05D004136 ORTHO05D004817 3.4e-13 78.6 71 49.3
BcaC01g00446 Brassica carinata HOM05D004136 ORTHO05D004817 4.4e-13 78.2 108 44.4
BolC3t20246H Brassica oleracea HOM05D004136 ORTHO05D004817 4.4e-13 78.2 108 44.4
CDE04G1766 Ceratophyllum demersum HOM05D004136 ORTHO05D004817 4.4e-13 78.2 78 43.6
Dinv23548 Davidia involucrata HOM05D004136 ORTHO05D004817 4.4e-13 78.2 46 78.3
Aa31LG6G13530 Aethionema arabicum HOM05D004136 ORTHO05D004817 5.8e-13 77.8 86 46.5
AUR62016708 Chenopodium quinoa HOM05D004136 ORTHO05D004817 5.8e-13 77.8 88 42.0
Haze_15121 Corylus avellana HOM05D004136 ORTHO05D004817 5.8e-13 77.8 92 39.1
TWI75G1726 Tripterygium wilfordii HOM05D004136 ORTHO05D004817 5.8e-13 77.8 92 44.6
C03p79930 Brassica napus HOM05D004136 ORTHO05D004817 9.8e-13 77.0 108 44.4
DCAR_017235 Daucus carota HOM05D004136 ORTHO05D004817 9.8e-13 77.0 73 45.2
ATR0733G067 Amborella trichopoda HOM05D004136 ORTHO05D004817 1.3e-12 76.6 67 52.2
BcaNung04434 Brassica carinata HOM05D004136 ORTHO05D004817 1.3e-12 76.6 112 42.9
C07p61890 Brassica napus HOM05D004136 ORTHO05D004817 1.3e-12 76.6 89 46.1
CARHR245070 Cardamine hirsuta HOM05D004136 ORTHO05D004817 2.2e-12 75.9 74 44.6
Gohir.D10G093300 Gossypium hirsutum HOM05D004136 ORTHO05D004817 2.2e-12 75.9 71 52.1
TPR.G18804 Trifolium pratense HOM05D004136 ORTHO05D004817 2.2e-12 75.9 93 39.8
ClCG01G019370 Citrullus lanatus HOM05D004136 ORTHO05D004817 2.9e-12 75.5 71 47.9
Gohir.A10G094600 Gossypium hirsutum HOM05D004136 ORTHO05D004817 4.9e-12 74.7 67 52.2
Gorai.011G102500 Gossypium raimondii HOM05D004136 ORTHO05D004817 4.9e-12 74.7 67 52.2
BraA01t00208Z Brassica rapa HOM05D001320 ORTHO05D006314 8.3e-12 73.9 115 38.3
BcaNung00706 Brassica carinata HOM05D004136 ORTHO05D004817 1.1e-11 73.6 72 48.6
A01p02190 Brassica napus HOM05D004136 ORTHO05D004817 1.1e-11 73.6 72 48.6
C01p02380 Brassica napus HOM05D004136 ORTHO05D004817 1.1e-11 73.6 72 48.6
FAN28G1223 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.4e-11 73.2 83 41.0
Mapoly0166s0019 Marchantia polymorpha HOM05D004136 ORTHO05D004817 1.4e-11 73.2 97 40.2
THA.LOC104807547 Tarenaya hassleriana HOM05D004136 ORTHO05D004817 1.4e-11 73.2 109 37.6
Psat2g161160 Pisum sativum HOM05D004136 ORTHO05D004817 1.9e-11 72.8 93 37.6
Zm00001eb148430 Zea mays HOM05D004136 ORTHO05D004817 1.9e-11 72.8 95 36.8
HPP92_007890 Vanilla planifolia HOM05D004136 ORTHO05D004817 5.4e-11 71.2 79 40.5
arahy.Tifrunner.gnm1.ann1.KSUC5C Arachis hypogaea HOM05D001320 ORTHO05D006314 9.2e-11 70.5 101 38.6
Os07g0568400 Oryza sativa ssp. japonica HOM05D004136 ORTHO05D004817 1.2e-10 70.1 95 35.8
HPP92_007875 Vanilla planifolia HOM05D004136 ORTHO05D004817 2.0e-10 69.3 79 39.2
Medtr5g019720 Medicago truncatula HOM05D004136 ORTHO05D004817 2.7e-10 68.9 108 35.2
GSVIVG01019007001 Vitis vinifera HOM05D004136 ORTHO05D004817 6.0e-10 67.8 48 62.5
PGSC0003DMG402015201 Solanum tuberosum HOM05D004136 ORTHO05D004817 1.0e-09 67.0 54 53.7
SMO215G0008 Selaginella moellendorffii HOM05D004136 ORTHO05D004817 6.6e-09 64.3 79 41.8
FAN19G3158 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.1e-08 63.5 46 56.5
PSO541G5216 Papaver somniferum HOM05D004136 ORTHO05D004817 1.1e-08 63.5 67 47.8
SEGI_19820 Sequoiadendron giganteum HOM05D004136 ORTHO05D004817 1.1e-08 63.5 105 32.4
Pp3c2_21660 Physcomitrium patens HOM05D004136 ORTHO05D004817 1.5e-08 63.2 66 45.5
Manes.13G137000 Manihot esculenta HOM05D004136 ORTHO05D004817 2.5e-08 62.4 57 50.9
MELO3C007812.2 Cucumis melo HOM05D004136 ORTHO05D004817 3.3e-08 62.0 69 40.6
SMO140G0008 Selaginella moellendorffii HOM05D004136 ORTHO05D004817 5.6e-08 61.2 58 48.3
AagrBONN_evm.TU.Sc2ySwM_344.5399 Anthoceros agrestis HOM05D004136 ORTHO05D004817 4.7e-07 58.2 67 43.3
arahy.Tifrunner.gnm1.ann1.65EKU6 Arachis hypogaea HOM05D004136 ORTHO05D004817 1.1e-06 57.0 132 30.3
FvH4_1g13870 Fragaria vesca HOM05D004136 ORTHO05D004817 3.1e-06 55.5 53 49.1
Ciclev10033473m.g Citrus clementina HOM05D004136 ORTHO05D004817 4.0e-06 55.1 39 66.7
SEGI_34010 Sequoiadendron giganteum HOM05D004136 ORTHO05D004817 5.2e-06 54.7 40 60.0


User provided reference genes

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