Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.4e-87 326.2 165 100.0
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 2.5e-52 209.1 179 67.0
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.3e-50 202.6 179 63.1
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 2.3e-50 202.6 179 63.1
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.5e-49 199.9 179 61.5
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 3.4e-49 198.7 180 62.8
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 5.8e-49 198.0 179 61.5
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.3e-48 196.8 179 60.9
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.3e-48 196.8 180 62.2
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 6.4e-48 194.5 179 61.5
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.1e-47 193.7 179 61.5
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-47 193.7 179 60.3
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-47 193.7 179 60.3
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.1e-47 193.7 179 60.3
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.1e-47 193.7 179 60.3
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.1e-47 193.7 179 60.9
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.4e-47 193.4 179 61.5
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.9e-47 193.0 179 60.3
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.9e-47 193.0 179 60.3
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.4e-47 192.6 179 59.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.2e-47 192.2 179 60.3
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 3.2e-47 192.2 179 60.9
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 4.1e-47 191.8 179 60.3
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.1e-47 191.8 179 59.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.1e-47 191.8 179 59.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.1e-47 191.8 179 59.8
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.1e-47 191.8 179 59.2
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.4e-47 191.4 179 60.9
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 5.4e-47 191.4 179 60.3
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.4e-47 191.4 179 59.8
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 5.4e-47 191.4 179 60.9
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 7.1e-47 191.0 179 61.5
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 7.1e-47 191.0 179 59.8
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 9.2e-47 190.7 179 59.8
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 9.2e-47 190.7 154 66.2
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 9.2e-47 190.7 179 59.8
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.2e-46 190.3 179 59.8
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.2e-46 190.3 179 60.9
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.6e-46 189.9 179 59.2
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-46 189.9 179 59.2
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-46 189.9 179 59.2
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.6e-46 189.9 179 59.2
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.6e-46 189.9 179 59.8
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.6e-46 189.9 179 59.8
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.6e-46 189.9 179 60.3
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.1e-46 189.5 179 60.9
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 2.1e-46 189.5 179 59.2
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 2.1e-46 189.5 179 60.9
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.1e-46 189.5 179 60.3
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 2.1e-46 189.5 179 59.8
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 2.7e-46 189.1 179 59.2
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.7e-46 189.1 179 58.7
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.7e-46 189.1 179 59.8
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.7e-46 189.1 179 60.3
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 2.7e-46 189.1 179 59.2
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.7e-46 189.1 179 59.8
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 3.5e-46 188.7 179 59.2
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 3.5e-46 188.7 179 58.7
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.5e-46 188.7 179 58.7
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 3.5e-46 188.7 180 60.6
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 4.6e-46 188.3 179 59.2
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 6.0e-46 188.0 179 59.2
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 6.0e-46 188.0 179 59.2
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 6.0e-46 188.0 179 59.2
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 6.0e-46 188.0 179 59.8
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 7.8e-46 187.6 179 58.1
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 7.8e-46 187.6 179 58.1
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 7.8e-46 187.6 179 59.2
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.0e-45 187.2 179 58.1
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 2.3e-45 186.0 180 59.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.3e-45 186.0 179 57.5
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 2.3e-45 186.0 179 57.5
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.3e-45 186.0 179 57.5
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 3.0e-45 185.7 179 57.0
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.9e-45 185.3 179 58.1
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.9e-45 185.3 179 57.0
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 5.1e-45 184.9 179 57.5
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 6.6e-45 184.5 180 59.4
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 6.6e-45 184.5 180 59.4
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 8.6e-45 184.1 179 58.1
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.1e-44 183.7 180 59.4
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.1e-44 183.7 179 57.5
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 1.1e-44 183.7 176 58.5
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 2.5e-44 182.6 179 57.5
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 3.3e-44 182.2 180 58.9
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 3.3e-44 182.2 180 58.9
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.3e-44 182.2 179 57.5
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.3e-44 182.2 179 57.5
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 4.3e-44 181.8 179 57.0
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 4.3e-44 181.8 179 57.0
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 5.6e-44 181.4 179 55.3
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 5.6e-44 181.4 179 55.3
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 5.6e-44 181.4 179 54.7
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 7.3e-44 181.0 180 58.9
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 7.3e-44 181.0 180 57.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 7.3e-44 181.0 180 58.9
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 7.3e-44 181.0 179 57.5
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 9.5e-44 180.6 179 56.4
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.2e-43 180.3 179 57.0
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.2e-43 180.3 180 58.3
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.2e-43 180.3 180 58.3
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.8e-43 179.1 179 55.3
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 3.6e-43 178.7 179 56.4
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 3.6e-43 178.7 180 56.7
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.4e-42 176.8 180 57.2
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.8e-42 176.4 179 55.3
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 3.1e-42 175.6 180 57.8
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 3.1e-42 175.6 154 61.7
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 4.0e-42 175.3 180 57.2
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 8.9e-42 174.1 179 55.3
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 2.0e-41 172.9 179 54.7
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 4.4e-41 171.8 179 54.7
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 5.8e-41 171.4 179 54.2
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.8e-40 168.7 181 53.6
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 4.9e-40 168.3 180 53.3
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.1e-39 167.2 164 57.9
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.9e-39 166.4 180 52.8
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.4e-39 166.0 187 52.4
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 3.2e-39 165.6 176 55.1
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 5.4e-39 164.9 164 57.3
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.2e-38 163.7 180 48.9
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.5e-38 162.2 180 51.1
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 4.6e-38 161.8 179 54.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 6.0e-38 161.4 178 52.8
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 2.3e-37 159.5 165 57.0
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 2.3e-37 159.5 156 59.0
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 3.0e-37 159.1 187 49.2
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 5.6e-36 154.8 179 52.0
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.5e-33 146.7 180 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 2.6e-33 146.0 178 46.6
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.4e-31 140.2 180 42.8
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.9e-31 139.8 130 58.5
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.1e-30 136.3 164 49.4
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.5e-28 130.2 148 50.7
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 4.3e-28 128.6 116 61.2
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 2.8e-27 125.9 156 51.9
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 2.8e-27 125.9 184 44.0
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 6.2e-27 124.8 120 58.3
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.8e-26 123.2 176 44.3
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.5e-25 118.6 187 44.4
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 1.3e-24 117.1 180 41.7
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.3e-19 100.5 128 50.0
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 7.6e-17 91.3 127 46.5
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.8e-16 89.0 101 50.5
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 8.4e-16 87.8 166 38.6
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.4e-15 87.0 159 36.5
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.8e-11 72.8 159 31.4
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 2.5e-07 59.7 54 59.3


User provided reference genes

Program Settings