Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013884.1 Olea europaea HOM05D003211 ORTHO05D003621 6.2e-48 193.7 94 100.0
Solyc04g081750.4 Solanum lycopersicum HOM05D003211 ORTHO05D003621 1.1e-33 146.4 82 86.6
Sopen04g035380 Solanum pennellii HOM05D003211 ORTHO05D003621 1.1e-33 146.4 82 86.6
PGSC0003DMG400009878 Solanum tuberosum HOM05D003211 ORTHO05D003621 1.1e-33 146.4 82 86.6
CAN.G311.51 Capsicum annuum HOM05D003211 ORTHO05D003621 1.6e-32 142.5 82 84.1
Nitab4.5_0006505g0010 Nicotiana tabacum HOM05D003211 ORTHO05D003621 1.2e-30 136.3 82 81.7
Cc10_g01390 Coffea canephora HOM05D003211 ORTHO05D003621 2.0e-30 135.6 82 80.5
Dinv39540 Davidia involucrata HOM05D003211 ORTHO05D003621 2.0e-30 135.6 82 80.5
ECA238G1606 Erigeron canadensis HOM05D003211 ORTHO05D003621 2.0e-30 135.6 82 75.6
Migut.C00865 Erythranthe guttata HOM05D003211 ORTHO05D003621 9.9e-30 133.3 82 80.5
Actinidia15442 Actinidia chinensis HOM05D003211 ORTHO05D003621 1.3e-29 132.9 82 78.0
MSTRG.1173 Avicennia marina HOM05D003211 ORTHO05D003621 1.3e-29 132.9 82 79.3
CANSAT25G3811 Cannabis sativa HOM05D003211 ORTHO05D003621 1.3e-29 132.9 82 78.0
unitig_26.g9886 Utricularia gibba HOM05D003211 ORTHO05D003621 1.3e-29 132.9 82 79.3
AL1G32920 Arabidopsis lyrata HOM05D003211 ORTHO05D003621 1.7e-29 132.5 82 75.6
AT1G20110 Arabidopsis thaliana HOM05D003211 ORTHO05D003621 1.7e-29 132.5 82 75.6
HanXRQChr14g0429841 Helianthus annuus HOM05D003211 ORTHO05D003621 1.7e-29 132.5 82 72.0
MD08G1009900 Malus domestica HOM05D003211 ORTHO05D003621 1.7e-29 132.5 82 76.8
A08p29490 Brassica napus HOM05D003211 ORTHO05D003621 2.2e-29 132.1 82 75.6
BraA08t34886Z Brassica rapa HOM05D003211 ORTHO05D003621 2.2e-29 132.1 82 75.6
HanXRQChr06g0183801 Helianthus annuus HOM05D003211 ORTHO05D003621 2.2e-29 132.1 82 72.0
BolC5t30571H Brassica oleracea HOM05D003211 ORTHO05D003621 2.9e-29 131.7 82 74.4
COL.COLO4_26114 Corchorus olitorius HOM05D003211 ORTHO05D003621 3.8e-29 131.3 82 76.8
MD15G1009800 Malus domestica HOM05D003211 ORTHO05D003621 3.8e-29 131.3 82 76.8
Thhalv10007122m.g Eutrema salsugineum HOM05D003211 ORTHO05D003621 4.9e-29 131.0 82 74.4
BcaB03g12880 Brassica carinata HOM05D003211 ORTHO05D003621 6.4e-29 130.6 82 74.4
BcaC07g39021 Brassica carinata HOM05D003211 ORTHO05D003621 6.4e-29 130.6 82 74.4
C08p19950 Brassica napus HOM05D003211 ORTHO05D003621 6.4e-29 130.6 82 74.4
BolC8t49632H Brassica oleracea HOM05D003211 ORTHO05D003621 6.4e-29 130.6 82 74.4
CARHR020600 Cardamine hirsuta HOM05D003211 ORTHO05D003621 6.4e-29 130.6 82 73.2
Carub.0001s1964 Capsella rubella HOM05D003211 ORTHO05D003621 8.4e-29 130.2 82 74.4
Sp1g17880 Schrenkiella parvula HOM05D003211 ORTHO05D003621 8.4e-29 130.2 82 73.2
Manes.05G144900 Manihot esculenta HOM05D003211 ORTHO05D003621 1.1e-28 129.8 82 75.6
MELO3C003739.2 Cucumis melo HOM05D003211 ORTHO05D003621 1.4e-28 129.4 83 73.5
CsaV3_3G046000 Cucumis sativus L. HOM05D003211 ORTHO05D003621 1.4e-28 129.4 83 73.5
CSS0033408 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 1.9e-28 129.0 78 80.8
Aqoxy6G02156 Aquilegia oxysepala HOM05D003211 ORTHO05D003621 3.2e-28 128.3 82 75.6
BcaC05g25910 Brassica carinata HOM05D003211 ORTHO05D003621 4.2e-28 127.9 82 72.0
C05p18600 Brassica napus HOM05D003211 ORTHO05D003621 4.2e-28 127.9 82 72.0
PGR031G0024 Punica granatum HOM05D003211 ORTHO05D003621 4.2e-28 127.9 81 76.5
FvH4_2g38130 Fragaria vesca HOM05D003211 ORTHO05D003621 7.1e-28 127.1 82 74.4
Sed0016624 Sechium edule HOM05D003211 ORTHO05D003621 7.1e-28 127.1 83 71.1
Gorai.009G192800 Gossypium raimondii HOM05D003211 ORTHO05D003621 9.3e-28 126.7 82 75.6
SGA_v2.0_scaffold92G28198 Striga asiatica HOM05D003211 ORTHO05D003621 9.3e-28 126.7 83 73.5
Cpa.g.sc26.295 Carica papaya HOM05D003211 ORTHO05D003621 1.2e-27 126.3 82 73.2
Haze_22671 Corylus avellana HOM05D003211 ORTHO05D003621 1.2e-27 126.3 82 74.4
Potri.005G242700 Populus trichocarpa HOM05D003211 ORTHO05D003621 1.2e-27 126.3 82 73.2
TWI36G1632 Tripterygium wilfordii HOM05D003211 ORTHO05D003621 1.2e-27 126.3 82 73.2
Cfa013985 Carpinus fangiana HOM05D003211 ORTHO05D003621 1.6e-27 125.9 82 74.4
CiPaw.02G001000 Carya illinoinensis HOM05D003211 ORTHO05D003621 1.6e-27 125.9 82 73.2
ClCG05G015550 Citrullus lanatus HOM05D003211 ORTHO05D003621 1.6e-27 125.9 83 71.1
Hma1.2p1_0023F.1_g015680 Hydrangea macrophylla HOM05D003211 ORTHO05D003621 1.6e-27 125.9 82 73.2
Os07g0573300 Oryza sativa ssp. japonica HOM05D003211 ORTHO05D003621 1.6e-27 125.9 80 72.5
Prupe.1G362200 Prunus persica HOM05D003211 ORTHO05D003621 1.6e-27 125.9 89 73.0
Sabra05G0188000 Salix brachista HOM05D003211 ORTHO05D003621 1.6e-27 125.9 84 70.2
Duzib116G0338 Durio zibethinus HOM05D003211 ORTHO05D003621 2.1e-27 125.6 82 72.0
Lsat_1_v5_gn_2_9160 Lactuca sativa HOM05D003211 ORTHO05D003621 2.1e-27 125.6 81 72.8
THA.LOC104809587 Tarenaya hassleriana HOM05D003211 ORTHO05D003621 2.1e-27 125.6 82 73.2
GSVIVG01009956001 Vitis vinifera HOM05D003211 ORTHO05D003621 2.1e-27 125.6 82 73.2
CSS0036463 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 2.7e-27 125.2 82 72.0
Glyma.06G023000 Glycine max HOM05D003211 ORTHO05D003621 2.7e-27 125.2 83 72.3
Rhsim06G0018400 Rhododendron simsii HOM05D003211 ORTHO05D003621 2.7e-27 125.2 80 76.2
Thecc.08G048400 Theobroma cacao HOM05D003211 ORTHO05D003621 2.7e-27 125.2 82 70.7
Glyma.04G023067 Glycine max HOM05D003211 ORTHO05D003621 3.5e-27 124.8 83 72.3
MBI08_g10498_MAGBIO Magnolia biondii HOM05D003211 ORTHO05D003621 3.5e-27 124.8 82 74.4
CDE05G2100 Ceratophyllum demersum HOM05D003211 ORTHO05D003621 4.6e-27 124.4 82 74.4
Manes.18G011114 Manihot esculenta HOM05D003211 ORTHO05D003621 4.6e-27 124.4 82 73.2
Sed0006879 Sechium edule HOM05D003211 ORTHO05D003621 4.6e-27 124.4 83 68.7
THA.LOC104811427 Tarenaya hassleriana HOM05D003211 ORTHO05D003621 4.6e-27 124.4 82 72.0
Ciclev10000707m.g Citrus clementina HOM05D003211 ORTHO05D003621 6.0e-27 124.0 82 72.0
RcHm_v2.0_Chr6g0303371 Rosa chinensis HOM05D003211 ORTHO05D003621 6.0e-27 124.0 82 72.0
Aa31LG4G6080 Aethionema arabicum HOM05D003211 ORTHO05D003621 7.9e-27 123.6 82 69.5
TAR381G1330 Trochodendron aralioides HOM05D003211 ORTHO05D003621 7.9e-27 123.6 82 73.2
Atru.chr13.250 Acer truncatum HOM05D003211 ORTHO05D003621 1.0e-26 123.2 82 70.7
Potri.002G018900 Populus trichocarpa HOM05D003211 ORTHO05D003621 1.0e-26 123.2 82 70.7
arahy.Tifrunner.gnm1.ann1.WVQ74Q Arachis hypogaea HOM05D003211 ORTHO05D003621 1.3e-26 122.9 83 71.1
arahy.Tifrunner.gnm1.ann1.YJZ5EZ Arachis hypogaea HOM05D003211 ORTHO05D003621 1.3e-26 122.9 83 71.1
Duzib093G0924 Durio zibethinus HOM05D003211 ORTHO05D003621 1.3e-26 122.9 82 72.0
CAN.G2331.3 Capsicum annuum HOM05D003211 ORTHO05D003621 1.8e-26 122.5 82 72.0
Ca_15479_v3 Cicer arietinum L. HOM05D003211 ORTHO05D003621 1.8e-26 122.5 83 71.1
Eucgr.H00952 Eucalyptus grandis HOM05D003211 ORTHO05D003621 1.8e-26 122.5 83 73.5
Gohir.A05G184800 Gossypium hirsutum HOM05D003211 ORTHO05D003621 1.8e-26 122.5 82 72.0
Nn6g31986 Nelumbo nucifera HOM05D003211 ORTHO05D003621 1.8e-26 122.5 82 69.5
Eucgr.H00938 Eucalyptus grandis HOM05D003211 ORTHO05D003621 2.3e-26 122.1 82 72.0
Gohir.D05G187600 Gossypium hirsutum HOM05D003211 ORTHO05D003621 2.3e-26 122.1 81 74.1
Lj1g0003320 Lotus japonicus HOM05D003211 ORTHO05D003621 3.0e-26 121.7 83 69.9
Phvul.009G018000 Phaseolus vulgaris HOM05D003211 ORTHO05D003621 3.0e-26 121.7 83 69.9
Hund01677 Selenicereus undatus HOM05D003211 ORTHO05D003621 3.0e-26 121.7 83 71.1
AUR62013929 Chenopodium quinoa HOM05D003211 ORTHO05D003621 3.9e-26 121.3 82 69.5
FAN20G1651 Fragaria x ananassa HOM05D003211 ORTHO05D003621 3.9e-26 121.3 89 69.7
Medtr3g114080 Medicago truncatula HOM05D003211 ORTHO05D003621 3.9e-26 121.3 83 69.9
EL10Ac6g15518 Beta vulgaris HOM05D003211 ORTHO05D003621 5.1e-26 120.9 82 67.1
Lalb_Chr03g0033451 Lupinus albus HOM05D003211 ORTHO05D003621 5.1e-26 120.9 83 69.9
Lalb_Chr19g0131471 Lupinus albus HOM05D003211 ORTHO05D003621 5.1e-26 120.9 80 72.5
Sabra02G0015100 Salix brachista HOM05D003211 ORTHO05D003621 5.1e-26 120.9 82 69.5
TAR376G0478 Trochodendron aralioides HOM05D003211 ORTHO05D003621 5.1e-26 120.9 82 69.5
arahy.Tifrunner.gnm1.ann1.R2EEBA Arachis hypogaea HOM05D003211 ORTHO05D003621 8.7e-26 120.2 80 72.5
EL10Ac1g02154 Beta vulgaris HOM05D003211 ORTHO05D003621 8.7e-26 120.2 82 68.3
QL06p051152 Quercus lobata HOM05D003211 ORTHO05D003621 8.7e-26 120.2 80 71.2
Ah.11g040010 Amaranthus hybridus HOM05D003211 ORTHO05D003621 1.1e-25 119.8 82 69.5
arahy.Tifrunner.gnm1.ann1.PQ7T65 Arachis hypogaea HOM05D003211 ORTHO05D003621 1.5e-25 119.4 80 71.2
AUR62018262 Chenopodium quinoa HOM05D003211 ORTHO05D003621 1.5e-25 119.4 82 68.3
Nn5g30788 Nelumbo nucifera HOM05D003211 ORTHO05D003621 1.5e-25 119.4 82 68.3
PSO541G4808 Papaver somniferum HOM05D003211 ORTHO05D003621 1.5e-25 119.4 82 70.7
PSO675G6715 Papaver somniferum HOM05D003211 ORTHO05D003621 1.5e-25 119.4 82 70.7
PGSC0003DMG400003585 Solanum tuberosum HOM05D003211 ORTHO05D003621 1.5e-25 119.4 82 68.3
ATR1155G038 Amborella trichopoda HOM05D003211 ORTHO05D003621 1.9e-25 119.0 81 71.6
FAN15G3158 Fragaria x ananassa HOM05D003211 ORTHO05D003621 1.9e-25 119.0 88 69.3
CDE05G2134 Ceratophyllum demersum HOM05D003211 ORTHO05D003621 2.5e-25 118.6 82 73.2
DCAR_010140 Daucus carota HOM05D003211 ORTHO05D003621 2.5e-25 118.6 82 68.3
VMungo1309G1711 Vigna mungo HOM05D003211 ORTHO05D003621 2.5e-25 118.6 83 68.7
Gohir.A02G083400 Gossypium hirsutum HOM05D003211 ORTHO05D003621 3.3e-25 118.2 82 72.0
Gohir.D02G098700 Gossypium hirsutum HOM05D003211 ORTHO05D003621 3.3e-25 118.2 82 72.0
Gorai.005G112600 Gossypium raimondii HOM05D003211 ORTHO05D003621 3.3e-25 118.2 82 72.0
Nitab4.5_0004653g0040 Nicotiana tabacum HOM05D003211 ORTHO05D003621 3.3e-25 118.2 81 69.1
Psat5g012920 Pisum sativum HOM05D003211 ORTHO05D003621 3.3e-25 118.2 80 71.2
TPR.G38138 Trifolium pratense HOM05D003211 ORTHO05D003621 4.3e-25 117.9 81 70.4
Actinidia28720 Actinidia chinensis HOM05D003211 ORTHO05D003621 5.6e-25 117.5 82 67.1
Eucgr.H00950 Eucalyptus grandis HOM05D003211 ORTHO05D003621 5.6e-25 117.5 83 69.9
Peaxi162Scf00328g00527 Petunia axillaris HOM05D003211 ORTHO05D003621 7.4e-25 117.1 82 68.3
Hund16506 Selenicereus undatus HOM05D003211 ORTHO05D003621 7.4e-25 117.1 82 65.9
Ah.03g149170 Amaranthus hybridus HOM05D003211 ORTHO05D003621 9.6e-25 116.7 82 67.1
Cc07_g11110 Coffea canephora HOM05D003211 ORTHO05D003621 9.6e-25 116.7 81 66.7
Nitab4.5_0001789g0140 Nicotiana tabacum HOM05D003211 ORTHO05D003621 9.6e-25 116.7 81 69.1
TWI12G0893 Tripterygium wilfordii HOM05D003211 ORTHO05D003621 9.6e-25 116.7 82 69.5
HPP92_002479 Vanilla planifolia HOM05D003211 ORTHO05D003621 9.6e-25 116.7 82 68.3
SalBow3G1150 Salvia bowleyana HOM05D003211 ORTHO05D003621 1.3e-24 116.3 78 70.5
SalBow3G3139 Salvia bowleyana HOM05D003211 ORTHO05D003621 1.3e-24 116.3 78 70.5
Glyma.17G259400 Glycine max HOM05D003211 ORTHO05D003621 1.6e-24 115.9 80 70.0
Sopen02g012960 Solanum pennellii HOM05D003211 ORTHO05D003621 1.6e-24 115.9 82 65.9
SMO358G0360 Selaginella moellendorffii HOM05D003211 ORTHO05D003621 2.1e-24 115.5 80 68.8
vmacro18428 Vaccinium macrocarpon HOM05D003211 ORTHO05D003621 2.1e-24 115.5 82 67.1
HPP92_002464 Vanilla planifolia HOM05D003211 ORTHO05D003621 2.1e-24 115.5 82 68.3
Dinv40121 Davidia involucrata HOM05D003211 ORTHO05D003621 2.8e-24 115.2 82 68.3
FAN27G3060 Fragaria x ananassa HOM05D003211 ORTHO05D003621 3.7e-24 114.8 88 67.0
PGSC0003DMG400023883 Solanum tuberosum HOM05D003211 ORTHO05D003621 3.7e-24 114.8 82 64.6
Dinv31872 Davidia involucrata HOM05D003211 ORTHO05D003621 4.8e-24 114.4 79 69.6
HanXRQChr16g0531491 Helianthus annuus HOM05D003211 ORTHO05D003621 4.8e-24 114.4 82 68.3
CSS0050063 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 8.2e-24 113.6 82 64.6
Solyc02g062000.4 Solanum lycopersicum HOM05D003211 ORTHO05D003621 8.2e-24 113.6 82 64.6
Lsat_1_v5_gn_3_72021 Lactuca sativa HOM05D003211 ORTHO05D003621 1.4e-23 112.8 83 61.4
Zm00001eb228270 Zea mays HOM05D003211 ORTHO05D003621 1.8e-23 112.5 84 63.1
ECA246G2864 Erigeron canadensis HOM05D003211 ORTHO05D003621 3.1e-23 111.7 82 67.1
vmacro07568 Vaccinium macrocarpon HOM05D003211 ORTHO05D003621 3.1e-23 111.7 70 75.7
Lj4C20G11 Lonicera japonica HOM05D003211 ORTHO05D003621 5.3e-23 110.9 120 52.5
Sc03g0003710 Simmondsia chinensis HOM05D003211 ORTHO05D003621 5.3e-23 110.9 82 62.2
MSTRG.2734 Avicennia marina HOM05D003211 ORTHO05D003621 1.2e-22 109.8 78 67.9
Pp3c14_11260 Physcomitrium patens HOM05D003211 ORTHO05D003621 1.2e-22 109.8 86 64.0
Rhsim08G0031800 Rhododendron simsii HOM05D003211 ORTHO05D003621 1.2e-22 109.8 82 64.6
CAN.G2331.1 Capsicum annuum HOM05D003211 ORTHO05D003621 1.5e-22 109.4 73 72.6
DCAR_013883 Daucus carota HOM05D003211 ORTHO05D003621 1.5e-22 109.4 70 72.9
SEGI_01879 Sequoiadendron giganteum HOM05D003211 ORTHO05D003621 1.5e-22 109.4 81 64.2
Zm00001eb065070 Zea mays HOM05D003211 ORTHO05D003621 2.0e-22 109.0 79 64.6
SHI30908 Sapria himalayana HOM05D003211 ORTHO05D003621 3.4e-22 108.2 77 66.2
Migut.H02184 Erythranthe guttata HOM05D003211 ORTHO05D003621 5.8e-22 107.5 78 65.4
Os06g0724100 Oryza sativa ssp. japonica HOM05D003211 ORTHO05D003621 5.8e-22 107.5 81 63.0
CBR_g30242 Chara braunii HOM05D003211 ORTHO05D003621 1.0e-21 106.7 75 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2325 Anthoceros agrestis HOM05D003211 ORTHO05D003621 3.8e-21 104.8 80 62.5
Mapoly0053s0010 Marchantia polymorpha HOM05D003211 ORTHO05D003621 1.9e-20 102.4 86 57.0
MBI05_g22093_MAGBIO Magnolia biondii HOM05D003211 ORTHO05D003621 3.2e-20 101.7 70 70.0
Nitab4.5_0000188g0210 Nicotiana tabacum HOM05D003211 ORTHO05D003621 5.5e-20 100.9 73 64.4
Nitab4.5_0009349g0010 Nicotiana tabacum HOM05D003211 ORTHO05D003621 5.5e-20 100.9 73 64.4
Lj4A223T32 Lonicera japonica HOM05D003211 ORTHO05D003621 7.1e-20 100.5 70 67.1
CSS0039753 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 9.3e-20 100.1 82 61.0
SGA_v2.0_scaffold108G31000 Striga asiatica HOM05D003211 ORTHO05D003621 2.7e-19 98.6 97 53.6
Lsat_1_v5_gn_5_63960 Lactuca sativa HOM05D003211 ORTHO05D003621 1.8e-18 95.9 67 62.7
Lsat_1_v5_gn_1_113880 Lactuca sativa HOM05D003211 ORTHO05D003621 2.3e-18 95.5 65 64.6
BcaB03g14334 Brassica carinata HOM05D000152 ORTHO05D000609 3.3e-17 91.7 81 55.6
Hma1.2p1_0869F.1_g230680 Hydrangea macrophylla HOM05D003211 ORTHO05D003621 4.3e-17 91.3 70 60.0
Actinidia27236 Actinidia chinensis HOM05D003211 ORTHO05D003621 2.8e-16 88.6 71 62.0
HPP92_012942 Vanilla planifolia HOM05D003211 ORTHO05D003621 1.8e-15 85.9 110 47.3
Lsat_1_v5_gn_0_42440 Lactuca sativa HOM05D003211 ORTHO05D003621 5.0e-13 77.8 40 77.5
QL02p012254 Quercus lobata HOM05D003211 ORTHO05D003621 5.0e-13 77.8 41 78.0
MSTRG.2735 Avicennia marina HOM05D003211 ORTHO05D003621 2.5e-12 75.5 38 78.9
FAN24G1870 Fragaria x ananassa HOM05D003211 ORTHO05D003621 1.6e-11 72.8 38 68.4
C07p23340 Brassica napus HOM05D003211 ORTHO05D003621 1.8e-10 69.3 69 55.1
BolC7t42867H Brassica oleracea HOM05D003211 ORTHO05D003621 1.8e-10 69.3 69 55.1
BcaNung03340 Brassica carinata HOM05D003211 ORTHO05D003621 2.0e-09 65.9 67 53.7
Peaxi162Scf00860g00435 Petunia axillaris HOM05D003211 ORTHO05D003621 1.4e-07 59.7 44 72.7
C08p52780 Brassica napus HOM05D003211 ORTHO05D021914 3.1e-07 58.5 59 54.2
ECA238G2455 Erigeron canadensis HOM05D003211 ORTHO05D003621 2.0e-06 55.8 44 52.3
Aqoxy7G00938 Aquilegia oxysepala HOM05D000903 ORTHO05D000731 7.7e-06 53.9 75 38.7


User provided reference genes

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