Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 6.7e-154 547.4 283 100.0
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.5e-81 307.0 283 59.0
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.0e-81 306.6 278 59.0
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 2.3e-77 293.1 283 57.6
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 9.5e-76 287.7 274 57.3
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.1e-75 286.6 273 60.1
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 4.7e-75 285.4 273 59.0
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 6.4e-72 275.0 272 59.2
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.4e-71 273.9 263 57.4
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.9e-71 273.5 273 54.6
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 3.2e-71 272.7 266 57.5
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.6e-69 265.0 233 59.7
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 6.6e-69 265.0 267 55.8
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.9e-68 263.5 280 53.6
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.6e-67 260.4 259 54.8
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 3.6e-67 259.2 277 54.2
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 4.7e-67 258.8 278 53.6
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 6.2e-67 258.5 259 55.2
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 1.1e-66 257.7 272 51.8
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 8.9e-66 254.6 264 54.9
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.9e-66 254.6 262 52.7
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.5e-65 253.8 262 52.3
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.6e-65 253.1 249 57.0
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 2.6e-65 253.1 262 55.0
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.6e-65 253.1 266 51.9
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 3.4e-65 252.7 276 52.2
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 3.4e-65 252.7 264 53.0
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 3.4e-65 252.7 263 55.5
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 5.8e-65 251.9 269 54.3
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.5e-65 251.5 254 54.3
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.5e-65 251.5 254 54.3
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 7.5e-65 251.5 273 52.7
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 1.7e-64 250.4 272 53.7
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.7e-64 250.4 282 51.1
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.9e-64 249.6 254 53.9
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 2.9e-64 249.6 261 53.6
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.4e-64 248.4 254 53.5
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.4e-64 248.4 254 53.5
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.3e-64 248.1 221 59.3
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 8.3e-64 248.1 265 54.7
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 8.3e-64 248.1 261 52.5
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 8.3e-64 248.1 269 52.0
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.4e-63 247.3 278 50.7
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 3.2e-63 246.1 264 54.5
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.2e-63 246.1 262 52.3
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 5.4e-63 245.4 262 51.9
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.6e-62 243.8 259 52.5
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 3.5e-62 242.7 262 51.9
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 1.0e-61 241.1 264 50.4
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 3.9e-61 239.2 268 52.2
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 3.9e-61 239.2 267 52.8
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 5.1e-61 238.8 263 53.6
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.5e-60 237.3 231 57.6
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.5e-60 237.3 273 49.1
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 1.5e-60 237.3 256 54.7
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 5.6e-60 235.3 268 51.1
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 7.3e-60 235.0 266 50.4
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 4.7e-59 232.3 275 49.8
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 8.1e-59 231.5 264 49.6
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.4e-58 230.7 272 48.2
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 4.0e-58 229.2 264 53.4
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 5.2e-58 228.8 266 50.0
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.4e-57 225.7 260 51.2
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 5.8e-57 225.3 251 50.6
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 7.6e-57 224.9 260 50.4
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.3e-56 224.2 269 48.3
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 3.8e-56 222.6 268 48.9
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 3.8e-56 222.6 256 50.0
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 4.9e-56 222.2 263 52.1
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.1e-55 219.2 260 50.0
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 3.5e-54 216.1 259 47.9
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.0e-53 214.5 258 49.2
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 1.9e-52 210.3 262 47.7
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 3.3e-52 209.5 265 46.8
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.6e-52 208.0 281 45.2
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 9.6e-52 208.0 259 45.9
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.6e-51 207.2 272 47.1
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 2.8e-51 206.5 263 47.5
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 6.2e-51 205.3 259 45.2
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 3.1e-50 203.0 266 48.1
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.0e-50 202.6 181 56.9
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 5.2e-50 202.2 271 44.3
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 5.2e-50 202.2 254 49.2
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 9.0e-50 201.4 255 45.9
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.2e-49 201.1 260 46.2
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-49 201.1 255 48.6
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.5e-49 200.7 260 46.9
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.6e-49 199.9 170 59.4
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 2.6e-49 199.9 259 49.4
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.4e-49 199.1 205 52.2
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 5.8e-49 198.7 261 47.9
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.7e-48 197.2 272 45.2
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.7e-48 197.2 259 45.9
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 2.2e-48 196.8 250 45.2
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.9e-48 196.4 181 56.9
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 4.9e-48 195.7 255 47.5
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.4e-47 194.1 254 45.3
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.4e-47 193.4 259 44.0
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.4e-47 193.4 259 44.0
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.6e-46 190.7 257 44.0
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.6e-46 190.7 259 45.6
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 3.5e-46 189.5 260 45.4
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 7.8e-46 188.3 261 46.7
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 3.0e-45 186.4 270 42.2
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.6e-45 185.3 197 51.8
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.6e-45 185.3 197 51.8
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 1.5e-44 184.1 261 44.8
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 4.3e-44 182.6 261 43.3
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 4.3e-44 182.6 254 42.5
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 5.6e-44 182.2 261 44.4
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 7.3e-44 181.8 258 41.9
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 9.6e-44 181.4 254 42.5
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.6e-43 180.6 255 42.7
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.6e-43 179.5 254 42.1
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.6e-43 179.5 254 42.1
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 3.6e-43 179.5 196 50.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 4.8e-43 179.1 196 50.0
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.2e-43 178.7 278 39.6
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 6.2e-43 178.7 278 39.6
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.1e-42 177.9 259 44.0
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 2.4e-42 176.8 260 42.3
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 3.1e-42 176.4 260 43.5
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 6.9e-42 175.3 265 42.3
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.2e-41 174.5 256 42.2
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 2.0e-41 173.7 255 42.4
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.6e-41 173.3 196 48.5
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 4.5e-41 172.6 261 41.0
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 9.9e-41 171.4 270 42.6
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 2.2e-40 170.2 259 42.1
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.8e-40 169.5 263 39.2
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 3.2e-39 166.4 254 39.8
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 3.2e-39 166.4 168 50.6
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 4.2e-39 166.0 260 40.8
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 4.6e-38 162.5 252 39.7
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 7.9e-38 161.8 215 47.0
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 7.4e-36 155.2 276 39.1
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 8.1e-35 151.8 277 40.1
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 3.1e-34 149.8 182 48.9
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.3e-34 149.1 206 47.6
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.5e-33 146.0 112 63.4
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.7e-32 144.1 105 69.5
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.9e-32 143.3 135 54.1
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 4.9e-32 142.5 112 62.5
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 4.9e-32 142.5 259 37.5
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.6e-30 137.5 150 49.3
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.0e-30 135.6 136 52.9
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 5.1e-29 132.5 119 52.9
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.1e-23 114.8 113 54.0
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.1e-20 104.8 161 40.4
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.6e-19 100.9 82 64.6
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.3e-16 91.3 70 64.3
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 1.1e-15 88.2 254 32.3
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 7.9e-14 82.0 148 31.1
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 2.3e-13 80.5 231 27.7
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 2.2e-11 73.9 172 29.7
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.0e-09 67.4 155 30.3
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.7e-08 64.3 300 22.7


User provided reference genes

Program Settings