Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013650.2 Olea europaea HOM05D004720 ORTHO05D005359 2.0e-100 369.0 172 100.0
Oeu055483.1 Olea europaea HOM05D004720 ORTHO05D005359 1.7e-88 329.3 171 87.7
MSTRG.22346 Avicennia marina HOM05D004720 ORTHO05D005359 8.1e-70 267.3 168 72.6
Sc01g0002070 Simmondsia chinensis HOM05D004720 ORTHO05D005359 1.4e-69 266.5 168 72.6
TPR.G32794 Trifolium pratense HOM05D004720 ORTHO05D005359 2.2e-67 259.2 168 67.3
Cc11_g07400 Coffea canephora HOM05D004720 ORTHO05D005359 2.9e-67 258.8 171 68.4
Psat0s2980g0120 Pisum sativum HOM05D004720 ORTHO05D005359 3.8e-67 258.5 168 66.7
SalBow8G1957 Salvia bowleyana HOM05D004720 ORTHO05D005359 4.9e-67 258.1 168 69.0
AUR62004579 Chenopodium quinoa HOM05D004720 ORTHO05D005359 6.4e-67 257.7 168 67.3
Glyma.16G015900 Glycine max HOM05D004720 ORTHO05D005359 6.4e-67 257.7 168 67.9
Phvul.009G260400 Phaseolus vulgaris HOM05D004720 ORTHO05D005359 8.4e-67 257.3 168 68.5
Phvul.010G121600 Phaseolus vulgaris HOM05D004720 ORTHO05D005359 1.1e-66 256.9 168 67.9
Thecc.01G329700 Theobroma cacao HOM05D004720 ORTHO05D005359 1.1e-66 256.9 168 67.3
Lalb_Chr10g0101001 Lupinus albus HOM05D004720 ORTHO05D005359 1.9e-66 256.1 168 66.7
Medtr8g023760 Medicago truncatula HOM05D004720 ORTHO05D005359 2.4e-66 255.8 168 65.5
MSTRG.24235 Avicennia marina HOM05D004720 ORTHO05D005359 3.2e-66 255.4 168 69.6
Migut.N03177 Erythranthe guttata HOM05D004720 ORTHO05D005359 3.2e-66 255.4 168 67.9
Gohir.A12G118300 Gossypium hirsutum HOM05D004720 ORTHO05D005359 3.2e-66 255.4 168 66.7
EL10Ac1g00157 Beta vulgaris HOM05D004720 ORTHO05D005359 4.1e-66 255.0 168 66.7
AUR62023525 Chenopodium quinoa HOM05D004720 ORTHO05D005359 4.1e-66 255.0 168 66.7
Duzib138G1845 Durio zibethinus HOM05D004720 ORTHO05D005359 5.4e-66 254.6 168 66.7
Cfa003710 Carpinus fangiana HOM05D004720 ORTHO05D005359 7.1e-66 254.2 167 67.1
Gohir.D12G122100 Gossypium hirsutum HOM05D004720 ORTHO05D005359 7.1e-66 254.2 168 66.1
Lj3g0005748 Lotus japonicus HOM05D004720 ORTHO05D005359 9.2e-66 253.8 170 67.1
Rhsim01G0182300 Rhododendron simsii HOM05D004720 ORTHO05D005359 1.6e-65 253.1 175 63.4
Gorai.008G132900 Gossypium raimondii HOM05D004720 ORTHO05D005359 2.1e-65 252.7 168 66.1
Hund16763 Selenicereus undatus HOM05D004720 ORTHO05D005359 2.1e-65 252.7 168 66.1
HanXRQChr15g0480161 Helianthus annuus HOM05D004720 ORTHO05D005359 2.7e-65 252.3 167 66.5
Eucgr.I02738 Eucalyptus grandis HOM05D004720 ORTHO05D005359 3.5e-65 251.9 176 64.8
Glyma.07G047400 Glycine max HOM05D004720 ORTHO05D005359 3.5e-65 251.9 168 67.3
VMungo0331G0756 Vigna mungo HOM05D004720 ORTHO05D005359 3.5e-65 251.9 171 66.7
Potri.014G109200 Populus trichocarpa HOM05D004720 ORTHO05D005359 6.0e-65 251.1 170 64.1
TAR629G2131 Trochodendron aralioides HOM05D004720 ORTHO05D005359 6.0e-65 251.1 168 65.5
Prupe.2G203800 Prunus persica HOM05D004720 ORTHO05D005359 7.8e-65 250.8 168 67.9
TWI14G1367 Tripterygium wilfordii HOM05D004720 ORTHO05D005359 7.8e-65 250.8 171 66.7
TWI59G0902 Tripterygium wilfordii HOM05D004720 ORTHO05D005359 1.3e-64 250.0 168 67.9
VMungo1309G1759 Vigna mungo HOM05D004720 ORTHO05D005359 1.3e-64 250.0 168 67.3
vmacro12631 Vaccinium macrocarpon HOM05D004720 ORTHO05D005359 1.7e-64 249.6 175 64.6
vmacro12632 Vaccinium macrocarpon HOM05D004720 ORTHO05D005359 1.7e-64 249.6 174 64.9
GSVIVG01027484001 Vitis vinifera HOM05D004720 ORTHO05D005359 1.7e-64 249.6 169 69.2
TAR375G0376 Trochodendron aralioides HOM05D004720 ORTHO05D005359 2.3e-64 249.2 169 66.9
FAN06G1212 Fragaria x ananassa HOM05D004720 ORTHO05D005359 5.1e-64 248.1 168 66.7
FAN06G1944 Fragaria x ananassa HOM05D004720 ORTHO05D005359 5.1e-64 248.1 168 66.7
Gohir.A11G102700 Gossypium hirsutum HOM05D004720 ORTHO05D005359 6.6e-64 247.7 168 64.3
SGA_v2.0_scaffold19G08558 Striga asiatica HOM05D004720 ORTHO05D005359 6.6e-64 247.7 168 68.5
Ah.05g178780 Amaranthus hybridus HOM05D004720 ORTHO05D005359 8.6e-64 247.3 168 66.1
FAN03G3442 Fragaria x ananassa HOM05D004720 ORTHO05D005359 8.6e-64 247.3 168 66.7
PGR142G1554 Punica granatum HOM05D004720 ORTHO05D005359 8.6e-64 247.3 171 62.0
CANSAT56G0093 Cannabis sativa HOM05D004720 ORTHO05D005359 1.1e-63 246.9 168 64.3
CANSAT56G0359 Cannabis sativa HOM05D004720 ORTHO05D005359 1.1e-63 246.9 168 64.3
HanXRQChr04g0118361 Helianthus annuus HOM05D004720 ORTHO05D005359 1.1e-63 246.9 167 64.7
SalBow8G2497 Salvia bowleyana HOM05D004720 ORTHO05D005359 1.1e-63 246.9 168 68.5
Gorai.007G114800 Gossypium raimondii HOM05D004720 ORTHO05D005359 1.5e-63 246.5 168 63.7
Cpa.g.sc57.64 Carica papaya HOM05D004720 ORTHO05D005359 2.5e-63 245.7 171 64.9
MD07G1165100 Malus domestica HOM05D004720 ORTHO05D005359 2.5e-63 245.7 168 66.7
QL08p048162 Quercus lobata HOM05D004720 ORTHO05D005359 2.5e-63 245.7 170 65.9
RcHm_v2.0_Chr1g0361841 Rosa chinensis HOM05D004720 ORTHO05D005359 2.5e-63 245.7 168 64.9
FAN01G2969 Fragaria x ananassa HOM05D004720 ORTHO05D005359 3.3e-63 245.4 168 66.1
Glyma.19G261600 Glycine max HOM05D004720 ORTHO05D005359 4.3e-63 245.0 168 64.9
Gohir.D11G107200 Gossypium hirsutum HOM05D004720 ORTHO05D005359 4.3e-63 245.0 168 63.1
Actinidia28079 Actinidia chinensis HOM05D004720 ORTHO05D005359 7.3e-63 244.2 173 66.5
Hma1.2p1_0904F.1_g235260 Hydrangea macrophylla HOM05D004720 ORTHO05D005359 7.3e-63 244.2 180 62.2
AL4G46350 Arabidopsis lyrata HOM05D004720 ORTHO05D005359 1.2e-62 243.4 168 65.5
AT2G46890 Arabidopsis thaliana HOM05D004720 ORTHO05D005359 1.2e-62 243.4 168 63.7
MELO3C005934.2 Cucumis melo HOM05D004720 ORTHO05D005359 1.2e-62 243.4 168 67.9
Sabra14G0080500 Salix brachista HOM05D004720 ORTHO05D005359 1.2e-62 243.4 170 61.8
Lj1g0024552 Lotus japonicus HOM05D004720 ORTHO05D005359 2.8e-62 242.3 168 63.1
arahy.Tifrunner.gnm1.ann1.4E6U7S Arachis hypogaea HOM05D004720 ORTHO05D005359 3.6e-62 241.9 168 63.7
THA.LOC104817408 Tarenaya hassleriana HOM05D004720 ORTHO05D005359 3.6e-62 241.9 171 63.2
arahy.Tifrunner.gnm1.ann1.51Q6V1 Arachis hypogaea HOM05D004720 ORTHO05D005359 4.7e-62 241.5 172 62.8
Manes.05G005900 Manihot esculenta HOM05D004720 ORTHO05D005359 4.7e-62 241.5 171 62.0
CiPaw.01G087200 Carya illinoinensis HOM05D004720 ORTHO05D005359 6.2e-62 241.1 173 63.6
FAN10G3292 Fragaria x ananassa HOM05D004720 ORTHO05D005359 8.1e-62 240.7 168 65.5
Nitab4.5_0009926g0010 Nicotiana tabacum HOM05D004720 ORTHO05D005359 8.1e-62 240.7 168 63.7
CAN.G215.8 Capsicum annuum HOM05D004720 ORTHO05D005359 1.8e-61 239.6 168 63.1
PSO063G0407 Papaver somniferum HOM05D004720 ORTHO05D005359 1.8e-61 239.6 168 63.7
THA.LOC104802106 Tarenaya hassleriana HOM05D004720 ORTHO05D005359 2.4e-61 239.2 171 61.4
CARHR142240 Cardamine hirsuta HOM05D004720 ORTHO05D005359 3.1e-61 238.8 168 63.1
Nn1g00486 Nelumbo nucifera HOM05D004720 ORTHO05D005359 3.1e-61 238.8 175 59.4
Nitab4.5_0000059g0020 Nicotiana tabacum HOM05D004720 ORTHO05D005359 3.1e-61 238.8 168 62.5
BraA05t19095Z Brassica rapa HOM05D004720 ORTHO05D005359 5.2e-61 238.0 168 62.5
ClCG05G000070 Citrullus lanatus HOM05D004720 ORTHO05D005359 5.2e-61 238.0 168 68.5
CsaV3_3G007120 Cucumis sativus L. HOM05D004720 ORTHO05D005359 5.2e-61 238.0 168 68.5
FvH4_7g18190 Fragaria vesca HOM05D004720 ORTHO05D005359 5.2e-61 238.0 168 64.9
C04p01090 Brassica napus HOM05D004720 ORTHO05D005359 9.0e-61 237.3 168 61.9
BolC4t21762H Brassica oleracea HOM05D004720 ORTHO05D005359 9.0e-61 237.3 168 61.9
A05p00950 Brassica napus HOM05D004720 ORTHO05D005359 1.2e-60 236.9 168 62.5
Carub.0004s2961 Capsella rubella HOM05D004720 ORTHO05D005359 1.2e-60 236.9 168 62.5
FAN01G0651 Fragaria x ananassa HOM05D004720 ORTHO05D005359 1.5e-60 236.5 168 64.3
Lsat_1_v5_gn_7_30260 Lactuca sativa HOM05D004720 ORTHO05D005359 1.5e-60 236.5 167 60.5
Manes.01G237600 Manihot esculenta HOM05D004720 ORTHO05D005359 3.4e-60 235.3 171 62.0
Medtr7g117475 Medicago truncatula HOM05D004720 ORTHO05D005359 3.4e-60 235.3 168 63.1
BcaC02g12630 Brassica carinata HOM05D004720 ORTHO05D005359 4.4e-60 235.0 168 61.3
Sp4g28910 Schrenkiella parvula HOM05D004720 ORTHO05D005359 4.4e-60 235.0 168 61.9
CSS0029348 Camellia sinensis var. sinensis HOM05D004720 ORTHO05D005359 5.8e-60 234.6 168 64.3
arahy.Tifrunner.gnm1.ann1.RUW1QS Arachis hypogaea HOM05D004720 ORTHO05D005359 7.6e-60 234.2 168 61.3
BcaC02g12632 Brassica carinata HOM05D004720 ORTHO05D005359 7.6e-60 234.2 168 61.9
FAN10G2406 Fragaria x ananassa HOM05D004720 ORTHO05D005359 7.6e-60 234.2 168 63.7
PSO782G4800 Papaver somniferum HOM05D004720 ORTHO05D005359 9.9e-60 233.8 168 64.3
PGSC0003DMG400010408 Solanum tuberosum HOM05D004720 ORTHO05D005359 1.3e-59 233.4 168 61.3
arahy.Tifrunner.gnm1.ann1.VX11NR Arachis hypogaea HOM05D004720 ORTHO05D005359 2.2e-59 232.6 168 60.1
Aa31LG1G28250 Aethionema arabicum HOM05D004720 ORTHO05D005359 2.9e-59 232.3 168 61.3
Thhalv10001550m.g Eutrema salsugineum HOM05D004720 ORTHO05D005359 2.9e-59 232.3 168 60.7
RcHm_v2.0_Chr1g0361831 Rosa chinensis HOM05D004720 ORTHO05D005359 3.8e-59 231.9 168 62.5
Lju170A21G18 Lonicera japonica HOM05D004720 ORTHO05D005359 8.4e-59 230.7 169 64.5
Aqoxy5G04383 Aquilegia oxysepala HOM05D004720 ORTHO05D005359 1.1e-58 230.3 168 59.5
Lsat_1_v5_gn_1_96800 Lactuca sativa HOM05D004720 ORTHO05D005359 1.1e-58 230.3 171 60.8
Atru.chr5.811 Acer truncatum HOM05D004720 ORTHO05D005359 1.9e-58 229.6 171 60.2
Sed0019181 Sechium edule HOM05D004720 ORTHO05D005359 1.9e-58 229.6 168 63.1
MBI04_g26123_MAGBIO Magnolia biondii HOM05D004720 ORTHO05D005359 3.2e-58 228.8 168 60.7
Solyc02g063390.4 Solanum lycopersicum HOM05D004720 ORTHO05D005359 5.4e-58 228.0 169 60.4
Sopen02g014480 Solanum pennellii HOM05D004720 ORTHO05D005359 9.3e-58 227.3 169 59.8
Ciclev10021135m.g Citrus clementina HOM05D004720 ORTHO05D005359 1.7e-56 223.0 170 61.2
SEGI_12121 Sequoiadendron giganteum HOM05D004720 ORTHO05D005359 2.3e-56 222.6 166 58.4
Lalb_Chr15g0076631 Lupinus albus HOM05D004720 ORTHO05D005359 3.9e-56 221.9 169 59.8
Nitab4.5_0000198g0100 Nicotiana tabacum HOM05D004720 ORTHO05D005359 2.5e-55 219.2 170 60.6
Nitab4.5_0006641g0010 Nicotiana tabacum HOM05D004720 ORTHO05D005359 4.3e-55 218.4 169 60.4
MBI12_g26903_MAGBIO Magnolia biondii HOM05D004720 ORTHO05D005359 8.1e-54 214.2 169 56.8
Psat0s786g0040 Pisum sativum HOM05D004720 ORTHO05D005359 4.0e-53 211.8 167 59.3
SHI20006 Sapria himalayana HOM05D004720 ORTHO05D005359 5.8e-52 208.0 129 68.2
Solyc01g005320.2 Solanum lycopersicum HOM05D004720 ORTHO05D005359 1.3e-51 206.8 169 58.0
PGSC0003DMG400019973 Solanum tuberosum HOM05D004720 ORTHO05D005359 1.3e-51 206.8 169 57.4
Zm00001eb418850 Zea mays HOM05D004720 ORTHO05D005359 8.4e-51 204.1 167 56.3
CAN.G282.131 Capsicum annuum HOM05D004720 ORTHO05D005359 1.1e-50 203.8 167 56.9
SalBow8G2700 Salvia bowleyana HOM05D035288 ORTHO05D005359 5.4e-50 201.4 154 59.1
ATR0579G058 Amborella trichopoda HOM05D004720 ORTHO05D005359 1.1e-47 193.7 160 56.2
FAN10G1043 Fragaria x ananassa HOM05D004720 ORTHO05D005359 2.1e-46 189.5 116 70.7
HPP92_007371 Vanilla planifolia HOM05D004720 ORTHO05D005359 2.8e-46 189.1 168 50.6
Mapoly0004s0057 Marchantia polymorpha HOM05D004720 ORTHO05D005359 5.3e-45 184.9 171 50.3
Pp3c5_6630 Physcomitrium patens HOM05D004720 ORTHO05D005359 8.4e-43 177.6 168 48.2
Dinv32658 Davidia involucrata HOM05D004720 ORTHO05D005359 3.9e-40 168.7 89 83.1
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 1.1e-39 167.2 170 45.9
Peaxi162Scf00937g00334 Petunia axillaris HOM05D004720 ORTHO05D005359 5.6e-39 164.9 144 56.2
SMO331G0060 Selaginella moellendorffii HOM05D004720 ORTHO05D005359 7.4e-39 164.5 169 45.6
ECA248G3521 Erigeron canadensis HOM05D004720 ORTHO05D005359 9.6e-39 164.1 96 71.9
Ca_23462_v3 Cicer arietinum L. HOM05D004720 ORTHO05D005359 2.1e-38 162.9 89 75.3
Ca_23475_v3 Cicer arietinum L. HOM05D004720 ORTHO05D005359 2.1e-38 162.9 89 75.3
Haze_15772 Corylus avellana HOM05D004720 ORTHO05D005359 2.0e-36 156.4 88 73.9
CiPaw.02G046300 Carya illinoinensis HOM05D004720 ORTHO05D005359 6.5e-35 151.4 89 69.7
Cre07.g325450 Chlamydomonas reinhardtii HOM05D004720 ORTHO05D005359 1.1e-34 150.6 184 41.8
CBR_g3145 Chara braunii HOM05D004720 ORTHO05D005359 1.4e-34 150.2 122 46.7
HanXRQChr11g0340921 Helianthus annuus HOM05D004720 ORTHO05D005359 1.9e-34 149.8 92 66.3
CDE04G1489 Ceratophyllum demersum HOM05D004720 ORTHO05D005359 2.1e-33 146.4 89 68.5
DCAR_010453 Daucus carota HOM05D004720 ORTHO05D005359 2.3e-32 142.9 89 66.3
unitig_21.g20150 Utricularia gibba HOM05D004720 ORTHO05D005359 4.3e-31 138.7 90 66.7
Sopen01g001340 Solanum pennellii HOM05D004720 ORTHO05D005359 2.8e-30 136.0 89 64.0
Cc11_g07410 Coffea canephora HOM05D004720 ORTHO05D005359 6.5e-19 98.2 115 46.1
COL.COLO4_23079 Corchorus olitorius HOM05D004720 ORTHO05D005359 1.1e-13 80.9 39 74.4
ECA236G2191 Erigeron canadensis HOM05D004720 ORTHO05D005359 9.1e-13 77.8 38 76.3
Os04g0105300 Oryza sativa ssp. japonica HOM05D004720 ORTHO05D005359 6.5e-11 71.6 83 45.8


User provided reference genes

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