Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 3.0e-78 295.0 144 100.0
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 1.7e-73 279.3 150 92.7
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 3.6e-23 112.1 131 45.0
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 4.7e-23 111.7 140 39.3
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 8.1e-23 110.9 132 41.7
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 8.1e-23 110.9 133 40.6
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 4.0e-22 108.6 139 41.0
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 5.2e-22 108.2 138 42.0
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.2e-22 108.2 138 42.0
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 1.2e-21 107.1 137 39.4
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 2.2e-20 102.8 140 35.7
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 4.9e-20 101.7 126 41.3
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 4.9e-20 101.7 128 39.8
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 6.4e-20 101.3 139 37.4
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 1.4e-19 100.1 129 40.3
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 1.9e-19 99.8 121 37.2
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 3.2e-19 99.0 119 42.9
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.2e-19 99.0 129 41.1
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 3.2e-19 99.0 129 41.1
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 3.2e-19 99.0 114 43.9
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 4.2e-19 98.6 138 37.7
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.2e-19 98.6 126 42.9
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 9.3e-19 97.4 141 38.3
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 9.3e-19 97.4 129 41.1
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 9.3e-19 97.4 129 41.1
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 1.6e-18 96.7 127 38.6
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.6e-18 96.7 128 40.6
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.6e-18 96.7 139 38.1
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 2.1e-18 96.3 119 42.0
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 2.1e-18 96.3 126 42.1
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.1e-18 96.3 126 42.1
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.1e-18 96.3 141 37.6
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 2.1e-18 96.3 112 39.3
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 4.6e-18 95.1 127 42.5
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 7.8e-18 94.4 124 39.5
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 7.8e-18 94.4 120 42.5
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 7.8e-18 94.4 123 37.4
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 1.0e-17 94.0 125 35.2
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 1.0e-17 94.0 129 35.7
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 1.7e-17 93.2 139 33.8
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 1.7e-17 93.2 116 37.1
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 2.3e-17 92.8 115 41.7
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 2.3e-17 92.8 120 37.5
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 3.0e-17 92.4 125 43.2
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 6.6e-17 91.3 114 43.0
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 6.6e-17 91.3 126 36.5
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 8.7e-17 90.9 137 37.2
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 8.7e-17 90.9 137 37.2
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 8.7e-17 90.9 124 38.7
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 8.7e-17 90.9 109 41.3
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 1.1e-16 90.5 134 37.3
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 1.5e-16 90.1 125 36.8
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 1.5e-16 90.1 137 32.8
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 1.5e-16 90.1 128 34.4
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 1.9e-16 89.7 123 41.5
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 1.9e-16 89.7 137 32.1
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 2.5e-16 89.4 129 38.0
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 2.5e-16 89.4 139 32.4
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 2.5e-16 89.4 117 43.6
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 3.3e-16 89.0 143 32.9
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 4.3e-16 88.6 114 38.6
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 5.6e-16 88.2 123 36.6
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 5.6e-16 88.2 122 40.2
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 7.3e-16 87.8 133 36.8
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 7.3e-16 87.8 121 38.0
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 7.3e-16 87.8 122 35.2
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 9.6e-16 87.4 113 42.5
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 9.6e-16 87.4 126 37.3
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 1.3e-15 87.0 122 35.2
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.3e-15 87.0 132 35.6
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 1.3e-15 87.0 128 35.9
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.6e-15 86.7 108 38.0
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 2.8e-15 85.9 129 39.5
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.6e-15 85.5 126 37.3
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 3.6e-15 85.5 119 37.0
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 6.2e-15 84.7 114 40.4
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 6.2e-15 84.7 134 38.1
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 6.2e-15 84.7 116 39.7
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 8.1e-15 84.3 115 39.1
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 1.1e-14 84.0 100 39.0
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 1.1e-14 84.0 125 40.8
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 1.4e-14 83.6 116 40.5
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.8e-14 83.2 126 36.5
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 2.4e-14 82.8 121 35.5
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.1e-14 82.4 122 38.5
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 3.1e-14 82.4 122 34.4
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 4.0e-14 82.0 116 38.8
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 5.3e-14 81.6 118 36.4
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.3e-14 81.6 115 38.3
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 5.3e-14 81.6 103 41.7
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 9.0e-14 80.9 136 34.6
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.5e-13 80.1 132 33.3
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.5e-13 80.1 112 40.2
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.6e-13 79.3 108 38.0
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 4.5e-13 78.6 121 38.8
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 4.5e-13 78.6 116 35.3
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 4.5e-13 78.6 134 33.6
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 4.5e-13 78.6 111 38.7
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 5.8e-13 78.2 107 36.4
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 9.9e-13 77.4 122 33.6
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 9.9e-13 77.4 121 34.7
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.3e-12 77.0 124 32.3
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 2.9e-12 75.9 100 37.0
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 4.9e-12 75.1 125 33.6
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 8.4e-12 74.3 119 32.8
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.9e-11 73.2 126 33.3
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 1.9e-11 73.2 87 43.7
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.9e-11 73.2 106 36.8
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.9e-11 73.2 106 36.8
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 2.4e-11 72.8 138 29.0
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.2e-11 72.0 115 37.4
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 4.2e-11 72.0 81 49.4
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 9.3e-11 70.9 118 35.6
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.2e-10 70.5 124 32.3
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.6e-10 70.1 116 35.3
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.1e-10 69.7 80 42.5
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.5e-10 68.9 116 35.3
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 4.6e-10 68.6 133 33.8
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.6e-10 68.6 95 36.8
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.0e-10 68.2 126 32.5
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 1.0e-09 67.4 92 37.0
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.0e-09 67.4 127 31.5
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.8e-09 66.6 118 31.4
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 1.8e-09 66.6 90 42.2
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 3.0e-09 65.9 101 34.7
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 1.1e-08 63.9 90 43.3
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 1.5e-08 63.5 83 38.6
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 1.9e-08 63.2 97 36.1
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 4.3e-08 62.0 123 34.1
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 7.4e-08 61.2 110 34.5
Nitab4.5_0006031g0060 Nicotiana tabacum HOM05D010896 ORTHO05D011162 1.6e-07 60.1 80 36.2
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 3.7e-07 58.9 104 27.9
PGR102G2156 Punica granatum HOM05D000838 ORTHO05D000656 4.8e-07 58.5 90 36.7
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.2e-07 58.2 103 32.0
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 1.4e-06 57.0 92 33.7
Nitab4.5_0000216g0220 Nicotiana tabacum HOM05D010896 ORTHO05D011162 1.8e-06 56.6 75 37.3
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.4e-06 56.2 65 46.2
Thecc.01G047200 Theobroma cacao HOM05D000395 ORTHO05D000088 3.1e-06 55.8 101 34.7
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 4.0e-06 55.5 98 31.6
PGSC0003DMG400015771 Solanum tuberosum HOM05D000838 ORTHO05D000656 4.0e-06 55.5 110 31.8
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.0e-06 54.3 89 39.3


User provided reference genes

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