Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013457.1 Olea europaea HOM05D003843 ORTHO05D004646 6.7e-128 460.7 232 100.0
SGA_v2.0_scaffold3G01428 Striga asiatica HOM05D003843 ORTHO05D004646 9.1e-101 370.5 229 83.0
Migut.N02389 Erythranthe guttata HOM05D003843 ORTHO05D004646 1.2e-100 370.2 229 83.0
SGA_v2.0_scaffold26G11383 Striga asiatica HOM05D003843 ORTHO05D004646 5.9e-100 367.9 229 82.1
Nitab4.5_0000492g0220 Nicotiana tabacum HOM05D003843 ORTHO05D004646 7.7e-100 367.5 229 82.1
Nitab4.5_0008505g0020 Nicotiana tabacum HOM05D003843 ORTHO05D004646 7.7e-100 367.5 229 82.1
MSTRG.21332 Avicennia marina HOM05D003843 ORTHO05D004646 1.7e-99 366.3 229 82.5
Peaxi162Scf00032g02619 Petunia axillaris HOM05D003843 ORTHO05D004646 2.3e-99 365.9 229 81.2
Sopen11g024630 Solanum pennellii HOM05D003843 ORTHO05D004646 2.9e-99 365.5 229 81.2
CSS0016417 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 8.6e-99 364.0 229 81.7
CSS0043612 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 8.6e-99 364.0 229 81.7
Cc00_g24230 Coffea canephora HOM05D003843 ORTHO05D004646 8.6e-99 364.0 229 80.3
Hma1.2p1_2801F.1_g328800 Hydrangea macrophylla HOM05D003843 ORTHO05D004646 1.5e-98 363.2 230 81.3
Solyc11g062430.2 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.9e-98 362.8 229 80.8
CAN.G96.3 Capsicum annuum HOM05D003843 ORTHO05D004646 2.5e-98 362.5 229 80.8
Peaxi162Scf00791g00019 Petunia axillaris HOM05D003843 ORTHO05D004646 2.5e-98 362.5 229 80.3
Rhsim13G0201300 Rhododendron simsii HOM05D003843 ORTHO05D004646 2.5e-98 362.5 229 81.2
THA.LOC104800481 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 2.5e-98 362.5 229 80.8
PSO339G6626 Papaver somniferum HOM05D003843 ORTHO05D004646 5.5e-98 361.3 229 79.5
PSO384G3915 Papaver somniferum HOM05D003843 ORTHO05D004646 5.5e-98 361.3 229 79.5
Ciclev10015276m.g Citrus clementina HOM05D003843 ORTHO05D004646 7.2e-98 360.9 229 80.3
Nitab4.5_0000718g0260 Nicotiana tabacum HOM05D003843 ORTHO05D004646 7.2e-98 360.9 229 81.2
Os01g0279200 Oryza sativa ssp. japonica HOM05D003843 ORTHO05D004646 1.2e-97 360.1 229 79.9
Lj2C938G6 Lonicera japonica HOM05D003843 ORTHO05D004646 1.6e-97 359.8 229 79.9
PGSC0003DMG400032509 Solanum tuberosum HOM05D003843 ORTHO05D004646 1.6e-97 359.8 229 79.9
Eucgr.B03772 Eucalyptus grandis HOM05D003843 ORTHO05D004646 2.1e-97 359.4 229 79.5
Atru.chr3.2831 Acer truncatum HOM05D003843 ORTHO05D004646 2.8e-97 359.0 229 79.9
ATR1096G029 Amborella trichopoda HOM05D003843 ORTHO05D004646 2.8e-97 359.0 229 79.0
Nn7g37169 Nelumbo nucifera HOM05D003843 ORTHO05D004646 3.6e-97 358.6 229 79.9
Potri.001G222700 Populus trichocarpa HOM05D003843 ORTHO05D004646 3.6e-97 358.6 229 79.5
Thecc.09G256000 Theobroma cacao HOM05D003843 ORTHO05D004646 3.6e-97 358.6 229 79.5
GSVIVG01025835001 Vitis vinifera HOM05D003843 ORTHO05D004646 3.6e-97 358.6 229 79.9
Cpa.g.sc84.81 Carica papaya HOM05D003843 ORTHO05D004646 4.7e-97 358.2 229 79.5
Sc20g0005970 Simmondsia chinensis HOM05D003843 ORTHO05D004646 4.7e-97 358.2 229 79.0
CANSAT64G0238 Cannabis sativa HOM05D003843 ORTHO05D004646 6.1e-97 357.8 229 79.5
Gohir.A09G107400 Gossypium hirsutum HOM05D003843 ORTHO05D004646 6.1e-97 357.8 229 79.5
Gohir.D09G104200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 6.1e-97 357.8 229 79.5
Gorai.006G121500 Gossypium raimondii HOM05D003843 ORTHO05D004646 6.1e-97 357.8 229 79.5
MD11G1176300 Malus domestica HOM05D003843 ORTHO05D004646 6.1e-97 357.8 229 79.9
Potri.009G020900 Populus trichocarpa HOM05D003843 ORTHO05D004646 6.1e-97 357.8 229 79.5
Actinidia07000 Actinidia chinensis HOM05D003843 ORTHO05D004646 8.0e-97 357.5 229 79.9
ECA236G0656 Erigeron canadensis HOM05D003843 ORTHO05D004646 8.0e-97 357.5 229 79.5
Manes.01G175000 Manihot esculenta HOM05D003843 ORTHO05D004646 8.0e-97 357.5 229 79.5
Solyc01g008840.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 8.0e-97 357.5 229 79.5
TAR623G0430 Trochodendron aralioides HOM05D003843 ORTHO05D004646 8.0e-97 357.5 229 79.5
Zm00001eb128990 Zea mays HOM05D003843 ORTHO05D004646 1.0e-96 357.1 229 79.5
Gohir.A07G118200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.4e-96 356.7 229 79.0
Gohir.D07G122600 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.4e-96 356.7 229 79.0
HanXRQChr04g0125421 Helianthus annuus HOM05D003843 ORTHO05D004646 1.4e-96 356.7 229 79.0
RcHm_v2.0_Chr5g0050051 Rosa chinensis HOM05D003843 ORTHO05D004646 1.8e-96 356.3 229 79.0
Sabra16G0132300 Salix brachista HOM05D003843 ORTHO05D004646 2.3e-96 355.9 229 79.5
PGSC0003DMG400022712 Solanum tuberosum HOM05D003843 ORTHO05D004646 2.3e-96 355.9 229 79.0
TWI75G1397 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 2.3e-96 355.9 229 79.9
PGR102G1130 Punica granatum HOM05D003843 ORTHO05D004646 3.0e-96 355.5 229 78.6
AUR62033585 Chenopodium quinoa HOM05D003843 ORTHO05D004646 4.0e-96 355.1 229 78.6
AUR62041414 Chenopodium quinoa HOM05D003843 ORTHO05D004646 4.0e-96 355.1 229 78.6
Gorai.001G132400 Gossypium raimondii HOM05D003843 ORTHO05D004646 5.2e-96 354.8 229 78.6
MD00G1108200 Malus domestica HOM05D003843 ORTHO05D004646 6.8e-96 354.4 229 79.0
Nitab4.5_0005212g0010 Nicotiana tabacum HOM05D003843 ORTHO05D004646 6.8e-96 354.4 229 79.9
Sabra09G0011400 Salix brachista HOM05D003843 ORTHO05D004646 6.8e-96 354.4 229 78.6
THA.LOC104826467 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 6.8e-96 354.4 229 78.2
ClCG02G024160 Citrullus lanatus HOM05D003843 ORTHO05D004646 8.8e-96 354.0 229 79.0
Duzib168G0367 Durio zibethinus HOM05D003843 ORTHO05D004646 1.5e-95 353.2 229 79.0
Manes.02G133500 Manihot esculenta HOM05D003843 ORTHO05D004646 4.4e-95 351.7 229 77.7
MELO3C014699.2 Cucumis melo HOM05D003843 ORTHO05D004646 5.7e-95 351.3 229 78.2
HanXRQChr06g0178281 Helianthus annuus HOM05D003843 ORTHO05D004646 5.7e-95 351.3 229 78.2
EL10Ac7g16998 Beta vulgaris HOM05D003843 ORTHO05D004646 9.8e-95 350.5 229 77.3
CAN.G128.106 Capsicum annuum HOM05D003843 ORTHO05D004646 9.8e-95 350.5 229 77.3
Aa31LG5G8390 Aethionema arabicum HOM05D003843 ORTHO05D004646 1.3e-94 350.1 229 77.7
Aqoxy2G00042 Aquilegia oxysepala HOM05D003843 ORTHO05D004646 1.3e-94 350.1 229 76.9
Haze_20342 Corylus avellana HOM05D003843 ORTHO05D004646 1.3e-94 350.1 240 76.7
Sed0007264 Sechium edule HOM05D003843 ORTHO05D004646 1.3e-94 350.1 229 77.7
CDE07G0877 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 1.7e-94 349.7 229 77.3
Duzib150G0366 Durio zibethinus HOM05D003843 ORTHO05D004646 1.7e-94 349.7 229 78.2
PGSC0003DMG400028109 Solanum tuberosum HOM05D003843 ORTHO05D004646 2.8e-94 349.0 229 76.9
RcHm_v2.0_Chr4g0435421 Rosa chinensis HOM05D003843 ORTHO05D004646 3.7e-94 348.6 229 76.9
Solyc10g081150.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 6.3e-94 347.8 229 76.4
CAN.G1332.3 Capsicum annuum HOM05D003843 ORTHO05D004646 8.3e-94 347.4 229 77.7
DCAR_013515 Daucus carota HOM05D003843 ORTHO05D004646 8.3e-94 347.4 229 77.7
FvH4_4g27570 Fragaria vesca HOM05D003843 ORTHO05D004646 8.3e-94 347.4 229 76.4
FAN07G2602 Fragaria x ananassa HOM05D003843 ORTHO05D004646 8.3e-94 347.4 229 76.4
FAN12G3037 Fragaria x ananassa HOM05D003843 ORTHO05D004646 8.3e-94 347.4 229 76.4
FAN12G3698 Fragaria x ananassa HOM05D003843 ORTHO05D004646 8.3e-94 347.4 229 76.4
Ca_03426_v3 Cicer arietinum L. HOM05D003843 ORTHO05D004646 1.1e-93 347.1 229 77.7
Sopen10g031650 Solanum pennellii HOM05D003843 ORTHO05D004646 1.8e-93 346.3 229 76.0
QL07p015334 Quercus lobata HOM05D003843 ORTHO05D004646 2.4e-93 345.9 229 78.2
vmacro04105 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 2.4e-93 345.9 229 77.7
arahy.Tifrunner.gnm1.ann1.286ZLS Arachis hypogaea HOM05D003843 ORTHO05D004646 7.0e-93 344.4 229 76.9
arahy.Tifrunner.gnm1.ann1.66YQP5 Arachis hypogaea HOM05D003843 ORTHO05D004646 7.0e-93 344.4 229 76.9
Lalb_Chr14g0365261 Lupinus albus HOM05D003843 ORTHO05D004646 7.0e-93 344.4 229 76.9
Mapoly0063s0071 Marchantia polymorpha HOM05D003843 ORTHO05D004646 7.0e-93 344.4 229 76.0
Pp3c9_2060 Physcomitrium patens HOM05D003843 ORTHO05D004646 7.0e-93 344.4 229 75.5
Prupe.6G156800 Prunus persica HOM05D003843 ORTHO05D004646 7.0e-93 344.4 229 78.2
Phvul.001G102200 Phaseolus vulgaris HOM05D003843 ORTHO05D004646 9.2e-93 344.0 229 76.9
Sp4g08320 Schrenkiella parvula HOM05D003843 ORTHO05D004646 9.2e-93 344.0 229 76.0
VMungo1383G3260 Vigna mungo HOM05D003843 ORTHO05D004646 9.2e-93 344.0 229 76.9
Lalb_Chr24g0400701 Lupinus albus HOM05D003843 ORTHO05D004646 1.2e-92 343.6 229 76.9
Medtr7g087530 Medicago truncatula HOM05D003843 ORTHO05D004646 1.2e-92 343.6 229 76.4
Pp3c17_10150 Physcomitrium patens HOM05D003843 ORTHO05D004646 1.2e-92 343.6 229 75.5
QL07p015316 Quercus lobata HOM05D003843 ORTHO05D004646 1.2e-92 343.6 229 76.4
CARHR119240 Cardamine hirsuta HOM05D003843 ORTHO05D004646 1.6e-92 343.2 229 76.4
CsaV3_4G017290 Cucumis sativus L. HOM05D003843 ORTHO05D004646 1.6e-92 343.2 239 74.9
CsaV3_4G023170 Cucumis sativus L. HOM05D003843 ORTHO05D004646 1.6e-92 343.2 239 74.9
CsaV3_UNG234370 Cucumis sativus L. HOM05D003843 ORTHO05D004646 1.6e-92 343.2 239 74.9
Lj1g0018589 Lotus japonicus HOM05D003843 ORTHO05D004646 1.6e-92 343.2 229 76.4
arahy.Tifrunner.gnm1.ann1.802V4W Arachis hypogaea HOM05D003843 ORTHO05D004646 2.0e-92 342.8 229 76.4
arahy.Tifrunner.gnm1.ann1.CI8U65 Arachis hypogaea HOM05D003843 ORTHO05D004646 2.0e-92 342.8 229 76.4
Thhalv10001988m.g Eutrema salsugineum HOM05D003843 ORTHO05D004646 2.0e-92 342.8 229 76.0
BcaC02g10850 Brassica carinata HOM05D003843 ORTHO05D004646 2.7e-92 342.4 229 76.0
C04p24530 Brassica napus HOM05D003843 ORTHO05D004646 2.7e-92 342.4 229 76.0
BolC4t23951H Brassica oleracea HOM05D003843 ORTHO05D004646 2.7e-92 342.4 229 76.0
Glyma.03G004400 Glycine max HOM05D003843 ORTHO05D004646 2.7e-92 342.4 229 76.4
Hund19273 Selenicereus undatus HOM05D003843 ORTHO05D004646 4.5e-92 341.7 229 75.5
CiPaw.09G163100 Carya illinoinensis HOM05D003843 ORTHO05D004646 5.9e-92 341.3 229 76.0
Psat3g083920 Pisum sativum HOM05D003843 ORTHO05D004646 7.8e-92 340.9 229 76.0
BcaB02g10062 Brassica carinata HOM05D003843 ORTHO05D004646 1.0e-91 340.5 229 75.5
Glyma.19G121500 Glycine max HOM05D003843 ORTHO05D004646 1.0e-91 340.5 229 76.0
Pp3c15_2200 Physcomitrium patens HOM05D003843 ORTHO05D004646 1.0e-91 340.5 229 75.5
vmacro14282 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 1.3e-91 340.1 229 76.9
AL4G20470 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 2.3e-91 339.3 229 75.1
BcaB01g03038 Brassica carinata HOM05D003843 ORTHO05D004646 2.3e-91 339.3 229 75.5
A07p17930 Brassica napus HOM05D003843 ORTHO05D004646 2.3e-91 339.3 229 75.5
BraA07t29511Z Brassica rapa HOM05D003843 ORTHO05D004646 2.3e-91 339.3 229 75.5
DCAR_020626 Daucus carota HOM05D003843 ORTHO05D004646 2.9e-91 339.0 229 74.2
TPR.G23658 Trifolium pratense HOM05D003843 ORTHO05D004646 2.9e-91 339.0 229 76.0
C03p32130 Brassica napus HOM05D003843 ORTHO05D004646 6.6e-91 337.8 229 75.1
BolC3t15555H Brassica oleracea HOM05D003843 ORTHO05D004646 6.6e-91 337.8 229 75.1
Glyma.05G079400 Glycine max HOM05D003843 ORTHO05D004646 1.1e-90 337.0 229 74.2
AT2G26990 Arabidopsis thaliana HOM05D003843 ORTHO05D004646 1.5e-90 336.7 229 74.7
A03p26810 Brassica napus HOM05D003843 ORTHO05D004646 5.6e-90 334.7 229 74.7
BraA03t11892Z Brassica rapa HOM05D003843 ORTHO05D004646 5.6e-90 334.7 229 74.7
Carub.0004s0747 Capsella rubella HOM05D003843 ORTHO05D004646 5.6e-90 334.7 229 74.7
Glyma.19G072400 Glycine max HOM05D003843 ORTHO05D004646 9.5e-90 334.0 229 73.8
MBI19_g17996_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 1.2e-89 333.6 229 75.5
Sed0025468 Sechium edule HOM05D003843 ORTHO05D004646 3.6e-89 332.0 229 74.7
SEGI_33472 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 4.7e-89 331.6 226 73.9
SMO117G0130 Selaginella moellendorffii HOM05D003843 ORTHO05D004646 8.0e-89 330.9 229 72.1
AagrBONN_evm.TU.Sc2ySwM_344.3619 Anthoceros agrestis HOM05D003843 ORTHO05D004646 1.0e-88 330.5 229 73.8
MD03G1163800 Malus domestica HOM05D003843 ORTHO05D004646 2.3e-88 329.3 229 75.1
Hund04069 Selenicereus undatus HOM05D003843 ORTHO05D004646 4.9e-86 321.6 230 73.0
CBR_g24102 Chara braunii HOM05D003843 ORTHO05D004646 1.4e-85 320.1 229 72.5
HPP92_012450 Vanilla planifolia HOM05D003843 ORTHO05D004646 3.5e-84 315.5 210 75.7
BcaC01g04918 Brassica carinata HOM05D003843 ORTHO05D004646 1.7e-83 313.2 229 71.2
Zm00001eb332660 Zea mays HOM05D003843 ORTHO05D004646 8.6e-83 310.8 210 76.2
Sopen01g004350 Solanum pennellii HOM05D003843 ORTHO05D004646 5.6e-82 308.1 200 78.0
CARHR063930 Cardamine hirsuta HOM05D003843 ORTHO05D004646 7.5e-79 297.7 231 68.0
Dinv12305 Davidia involucrata HOM05D003843 ORTHO05D004646 7.5e-79 297.7 229 70.3
Lsat_1_v5_gn_8_85240 Lactuca sativa HOM05D003843 ORTHO05D004646 9.8e-79 297.4 229 69.0
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 1.9e-77 293.1 200 74.5
TWI79G0192 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 4.7e-73 278.5 182 76.9
EL10Ac1g01678 Beta vulgaris HOM05D003843 ORTHO05D004646 9.9e-71 270.8 151 87.4
Haze_20346 Corylus avellana HOM05D003843 ORTHO05D004646 1.7e-70 270.0 158 84.2
MCO01G792 Micromonas commoda HOM05D003843 ORTHO05D004646 4.6e-68 261.9 230 57.8
Cre01.g030800 Chlamydomonas reinhardtii HOM05D003843 ORTHO05D004646 7.3e-66 254.6 231 57.6
COL.COLO4_24925 Corchorus olitorius HOM05D003843 ORTHO05D004646 2.8e-65 252.7 203 65.5
PRCOL_00002476 Prasinoderma coloniale HOM05D003843 ORTHO05D004646 1.1e-64 250.8 229 57.2
Haze_26275 Corylus avellana HOM05D003843 ORTHO05D004646 1.0e-59 234.2 230 54.3
Rhsim13G0197000 Rhododendron simsii HOM05D003843 ORTHO05D004646 1.7e-59 233.4 250 54.4
SHI24965 Sapria himalayana HOM05D003843 ORTHO05D004646 7.3e-58 228.0 130 84.6
CDE04G2865 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 2.9e-54 216.1 151 72.2
VMungo1309G2340 Vigna mungo HOM05D003843 ORTHO05D004646 1.9e-50 203.4 152 69.7
Cfa024421 Carpinus fangiana HOM05D003843 ORTHO05D004646 1.4e-45 187.2 212 44.8
AL8G39810 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 9.0e-40 167.9 232 40.9
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 6.3e-25 118.6 191 38.2
SEGI_37910 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 2.3e-19 100.1 54 88.9
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 2.6e-15 86.7 153 35.9
BcaC01g03723 Brassica carinata HOM05D003843 ORTHO05D091273 1.6e-12 77.4 153 35.9
SHI24968 Sapria himalayana HOM05D003843 ORTHO05D004646 2.1e-12 77.0 46 82.6
ClCG10G014090 Citrullus lanatus HOM05D006109 ORTHO05D007647 3.6e-12 76.3 67 62.7
Lsat_1_v5_gn_4_91020 Lactuca sativa HOM05D000919 ORTHO05D001187 1.4e-08 64.3 40 72.5
BcaB04g18969 Brassica carinata HOM05D003843 ORTHO05D092575 1.3e-06 57.8 50 52.0


User provided reference genes

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