Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.1e-241 838.6 406 100.0
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 4.4e-143 511.9 456 61.0
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 5.8e-143 511.5 457 60.4
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 3.8e-142 508.8 457 61.1
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.8e-142 508.8 431 62.4
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.4e-141 506.9 465 59.6
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.9e-141 506.5 458 59.2
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 3.2e-141 505.8 456 59.9
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 2.1e-140 503.1 444 60.1
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 4.6e-140 501.9 454 58.6
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 6.0e-140 501.5 445 60.2
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.0e-139 500.7 465 59.1
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 2.5e-138 496.1 451 58.3
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 5.6e-138 495.0 451 57.9
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 9.6e-138 494.2 453 59.6
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 9.6e-138 494.2 443 58.9
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.6e-137 492.3 455 58.2
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.6e-137 492.3 443 58.9
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 6.2e-137 491.5 450 58.7
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 8.1e-137 491.1 461 57.3
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 1.1e-136 490.7 441 59.0
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.4e-136 490.3 449 58.1
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.4e-136 490.3 451 57.6
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.4e-136 489.6 450 59.1
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 4.0e-136 488.8 450 58.2
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 5.3e-136 488.4 457 58.2
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.2e-135 487.3 457 58.4
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.2e-135 487.3 451 58.3
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.5e-135 486.9 442 58.4
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.0e-135 486.5 445 59.3
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.6e-135 486.1 450 57.6
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.6e-135 486.1 450 58.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 5.8e-135 485.0 445 58.9
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 5.8e-135 485.0 447 57.3
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.3e-134 483.8 449 56.8
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.7e-134 483.4 448 58.3
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.7e-134 483.4 448 58.3
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.7e-134 483.4 450 57.8
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.7e-134 483.4 445 59.6
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.2e-134 483.0 459 58.4
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 8.4e-134 481.1 448 57.6
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.1e-133 480.7 431 60.8
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.1e-133 480.7 451 57.6
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.4e-133 480.3 448 57.8
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.4e-133 479.6 444 57.0
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 2.4e-133 479.6 444 57.7
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.4e-133 479.6 445 58.9
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 3.2e-133 479.2 451 56.3
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.2e-133 478.8 444 56.8
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.4e-133 478.4 444 56.5
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.1e-133 478.0 451 57.0
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 9.3e-133 477.6 457 56.5
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.6e-132 476.9 451 55.7
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.6e-132 476.9 462 56.3
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 2.1e-132 476.5 445 57.5
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.5e-132 475.7 457 56.2
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 4.6e-132 475.3 443 57.8
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.0e-131 474.2 447 57.3
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.0e-131 474.2 457 56.9
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.3e-131 473.8 441 59.0
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.8e-131 473.4 444 57.4
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.0e-131 472.6 432 58.3
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 3.9e-131 472.2 483 53.8
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 8.7e-131 471.1 444 56.5
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 8.7e-131 471.1 447 56.6
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 3.3e-130 469.2 434 57.6
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 3.3e-130 469.2 445 57.5
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 5.6e-130 468.4 446 57.0
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 2.1e-129 466.5 444 56.8
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 2.8e-129 466.1 455 54.9
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 3.7e-129 465.7 444 56.8
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 1.8e-128 463.4 446 56.3
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.8e-128 463.4 531 50.7
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.8e-128 463.4 452 56.0
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 2.4e-128 463.0 446 56.1
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.2e-127 460.7 446 56.1
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.2e-127 460.7 446 56.1
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 2.0e-127 459.9 445 56.2
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 2.6e-127 459.5 445 56.4
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 2.6e-127 459.5 453 55.8
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.5e-127 458.8 448 55.8
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 4.5e-127 458.8 444 56.3
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.7e-126 456.8 471 54.1
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 4.9e-126 455.3 455 54.1
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 8.4e-126 454.5 446 54.9
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 8.4e-126 454.5 456 53.9
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.4e-125 453.8 435 55.2
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 2.4e-125 453.0 441 55.8
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.4e-125 453.0 445 54.8
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 2.4e-125 453.0 451 54.3
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.2e-125 452.2 441 54.9
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.5e-125 451.8 443 54.4
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 5.5e-125 451.8 446 54.9
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 7.1e-125 451.4 445 54.4
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 9.3e-125 451.1 445 54.2
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.6e-124 450.3 446 54.7
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 2.1e-124 449.9 445 54.4
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.3e-123 447.2 445 53.9
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.3e-123 447.2 445 53.9
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.3e-123 447.2 445 53.9
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.3e-123 447.2 445 54.2
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.3e-123 446.4 446 53.8
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.3e-123 446.4 462 53.2
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 3.0e-123 446.0 456 52.9
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 6.7e-123 444.9 445 52.6
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 9.6e-122 441.0 510 51.2
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.1e-121 439.9 460 51.7
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 4.0e-120 435.6 458 52.8
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 2.9e-118 429.5 443 54.4
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.8e-113 412.9 439 52.8
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.8e-112 410.2 448 50.2
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.4e-112 409.8 444 50.9
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 5.0e-110 402.1 416 54.1
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 6.5e-110 401.7 439 50.3
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.1e-104 384.4 451 49.2
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.1e-104 382.9 466 50.0
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 5.3e-104 382.1 379 55.1
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.9e-103 378.6 410 52.4
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.9e-93 347.1 387 51.7
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.0e-90 337.0 382 50.0
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 7.0e-80 302.0 440 43.9
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 7.0e-80 302.0 329 52.9
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 3.6e-76 289.7 420 43.3
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 2.0e-74 283.9 210 68.1
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 2.0e-74 283.9 431 40.8
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.2e-71 274.6 293 54.3
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 1.6e-71 274.2 286 53.5
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 2.0e-63 247.3 198 61.6
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 9.5e-61 238.4 161 72.0
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.6e-58 230.3 355 41.1
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.8e-58 229.2 414 37.9
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 7.3e-53 212.2 136 71.3
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 2.1e-52 210.7 133 72.9
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.4e-50 203.4 132 69.7
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.1e-48 198.4 209 51.7
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-47 194.9 131 65.6
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 3.3e-45 186.8 195 51.8
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.6e-45 186.0 145 57.9
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.3e-43 180.6 145 60.7
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 6.2e-36 156.0 110 68.2
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 1.8e-35 154.5 98 73.5
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 4.9e-33 146.4 136 54.4
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.2e-31 141.7 178 39.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 9.9e-26 122.1 138 50.0
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.4e-24 117.5 75 73.3
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.2e-24 117.1 77 72.7
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.3e-22 111.7 71 71.8
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.3e-22 111.7 71 70.4
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.5e-21 107.5 69 71.0
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 9.6e-21 105.5 66 72.7
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 5.8e-18 96.3 79 55.7
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 5.4e-16 89.7 65 60.0
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 7.1e-16 89.4 68 57.4
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 2.7e-15 87.4 59 69.5
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 4.8e-12 76.6 52 73.1
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 1.8e-11 74.7 44 70.5
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 6.9e-11 72.8 49 63.3
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.5e-08 63.2 35 74.3
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 2.7e-07 60.8 36 80.6


User provided reference genes

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