Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 5.1e-102 374.4 186 100.0
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 3.7e-36 155.6 87 92.0
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 6.3e-36 154.8 87 88.5
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 6.3e-36 154.8 87 88.5
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 8.3e-36 154.5 87 88.5
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 8.3e-36 154.5 87 88.5
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 1.1e-35 154.1 87 89.7
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 2.4e-35 152.9 87 87.4
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 2.4e-35 152.9 87 89.7
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 2.4e-35 152.9 87 89.7
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 5.3e-35 151.8 87 87.4
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 5.3e-35 151.8 87 88.5
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 5.3e-35 151.8 87 87.4
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 7.0e-35 151.4 87 88.5
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 9.1e-35 151.0 87 88.5
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 9.1e-35 151.0 87 89.7
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 9.1e-35 151.0 87 89.7
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.2e-34 150.6 87 88.5
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 1.2e-34 150.6 87 85.1
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.2e-34 150.6 87 87.4
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.2e-34 150.6 87 87.4
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.2e-34 150.6 87 88.5
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.2e-34 150.6 87 88.5
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.2e-34 150.6 87 88.5
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.2e-34 150.6 87 87.4
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.6e-34 150.2 87 86.2
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.6e-34 150.2 87 85.1
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 2.0e-34 149.8 87 87.4
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 2.0e-34 149.8 87 87.4
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 2.7e-34 149.4 87 85.1
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.7e-34 149.4 87 86.2
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.7e-34 149.4 87 85.1
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 2.7e-34 149.4 87 86.2
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.5e-34 149.1 87 86.2
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 3.5e-34 149.1 87 85.1
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.5e-34 148.7 87 86.2
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.5e-34 148.7 87 85.1
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 4.5e-34 148.7 87 85.1
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 4.5e-34 148.7 87 86.2
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 4.5e-34 148.7 87 86.2
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 5.9e-34 148.3 87 85.1
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 5.9e-34 148.3 87 81.6
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 5.9e-34 148.3 87 88.5
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 7.7e-34 147.9 87 85.1
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.0e-33 147.5 87 85.1
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.0e-33 147.5 87 86.2
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.0e-33 147.5 87 90.8
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.0e-33 147.5 87 88.5
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.3e-33 147.1 87 83.9
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.7e-33 146.7 97 77.3
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 2.2e-33 146.4 87 83.9
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.2e-33 146.4 87 83.9
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 3.8e-33 145.6 87 83.9
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 3.8e-33 145.6 87 83.9
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.0e-33 145.2 85 85.9
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 5.0e-33 145.2 88 81.8
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 6.5e-33 144.8 87 83.9
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.5e-33 144.4 87 82.8
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 8.5e-33 144.4 87 82.8
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 8.5e-33 144.4 87 82.8
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 8.5e-33 144.4 87 80.5
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 8.5e-33 144.4 84 88.1
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.1e-32 144.1 94 76.6
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.1e-32 144.1 87 83.9
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.1e-32 144.1 87 85.1
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.5e-32 143.7 87 82.8
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-32 143.3 87 82.8
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-32 143.3 87 82.8
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-32 143.3 87 82.8
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-32 143.3 87 82.8
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 81.6
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 82.8
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 82.8
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 82.8
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 82.8
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 82.8
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 82.8
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 82.8
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 82.8
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 82.8
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 83.9
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 2.5e-32 142.9 87 82.8
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 3.2e-32 142.5 87 81.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 3.2e-32 142.5 87 81.6
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 3.2e-32 142.5 87 82.8
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 3.2e-32 142.5 87 82.8
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 4.2e-32 142.1 87 82.8
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 4.2e-32 142.1 87 81.6
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.5e-32 141.7 87 81.6
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 7.2e-32 141.4 87 81.6
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.2e-31 140.6 87 81.6
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 79.3
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 79.3
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 82.8
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 82.8
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 82.8
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 81.6
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 81.6
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 80.5
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 80.5
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 80.5
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 81.6
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-31 140.2 87 81.6
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.1e-31 139.8 84 84.5
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-31 139.8 87 79.3
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 2.7e-31 139.4 87 80.5
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 2.7e-31 139.4 87 79.3
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.7e-31 139.4 87 79.3
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-31 139.4 87 80.5
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 3.6e-31 139.0 93 78.5
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 4.7e-31 138.7 87 80.5
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.0e-31 137.9 87 78.2
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.0e-30 137.5 87 79.3
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-30 137.1 87 78.2
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.8e-30 136.7 87 79.3
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 2.3e-30 136.3 87 78.2
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 2.3e-30 136.3 87 79.3
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 2.3e-30 136.3 87 80.5
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 6.8e-30 134.8 97 74.2
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.8e-30 134.4 87 77.0
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 8.8e-30 134.4 188 46.8
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.2e-29 134.0 87 77.0
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 7.5e-29 131.3 87 77.0
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.8e-28 129.4 87 79.3
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 8.3e-28 127.9 87 73.6
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 5.4e-27 125.2 92 69.6
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 9.1e-27 124.4 87 71.3
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 1.6e-26 123.6 87 70.1
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 2.0e-26 123.2 87 73.6
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-26 123.2 87 74.7
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 2.7e-26 122.9 87 70.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 2.7e-26 122.9 87 71.3
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.0e-25 120.9 70 84.3
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-25 120.9 87 72.4
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.0e-25 120.9 87 69.0
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.0e-25 118.6 87 72.4
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 7.2e-24 114.8 87 64.4
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 1.2e-23 114.0 77 74.0
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.2e-23 114.0 87 71.3
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-23 113.6 70 81.4
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-23 113.6 70 81.4
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-23 112.5 70 80.0
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 8.0e-23 111.3 87 60.9
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.3e-22 109.8 64 84.4
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 2.3e-22 109.8 85 63.5
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 4.0e-22 109.0 87 65.5
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 1.2e-21 107.5 87 59.8
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.0e-21 106.7 87 70.1
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 8.3e-20 101.3 64 79.7
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 2.1e-15 86.7 87 51.7
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.4e-14 84.0 60 75.0
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 8.9e-14 81.3 60 73.3
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 2.0e-13 80.1 53 75.5
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 3.2e-11 72.8 87 41.4
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-09 67.8 48 70.8
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-09 67.8 48 70.8
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 3.0e-09 66.2 89 37.1
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.5e-08 63.9 34 82.4
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.3e-08 62.8 47 70.2
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 5.6e-08 62.0 87 34.5
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.1e-06 57.8 32 81.2
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.4e-06 57.4 32 81.2


User provided reference genes

Program Settings