Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 3.1e-117 425.2 230 100.0
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 6.9e-101 370.9 220 85.9
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 4.7e-81 305.1 220 69.1
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.8e-77 293.1 193 74.1
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 9.1e-77 290.8 192 72.4
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.3e-75 287.0 193 73.1
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 2.2e-75 286.2 191 72.3
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.1e-74 283.9 193 73.6
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.5e-74 283.5 193 74.1
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.5e-74 282.7 192 73.4
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.0e-71 273.1 225 68.4
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 5.9e-68 261.5 195 65.1
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 8.6e-67 257.7 196 63.8
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 4.7e-65 251.9 196 61.7
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 4.7e-65 251.9 196 63.8
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.0e-64 250.8 200 62.0
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 1.8e-64 250.0 196 61.7
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 6.8e-64 248.1 198 61.6
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.9e-64 247.7 200 61.0
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.5e-63 246.9 200 61.0
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.5e-63 246.9 200 61.5
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 2.0e-63 246.5 219 67.6
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 3.4e-63 245.7 195 62.6
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 3.4e-63 245.7 196 61.2
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 3.7e-62 242.3 195 62.1
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 6.3e-62 241.5 198 60.1
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 6.3e-62 241.5 195 61.5
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.4e-61 239.6 196 61.2
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 3.1e-61 239.2 198 61.1
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 4.1e-61 238.8 178 65.7
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 5.4e-61 238.4 200 58.0
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 5.4e-61 238.4 197 60.9
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 9.2e-61 237.7 192 62.5
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 9.2e-61 237.7 197 58.9
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.6e-60 236.9 197 58.4
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 2.0e-60 236.5 193 62.2
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 2.0e-60 236.5 197 58.9
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.0e-59 234.2 197 58.4
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.0e-59 234.2 197 59.9
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.7e-59 233.4 198 58.6
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.7e-59 233.4 195 61.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 2.3e-59 233.0 196 60.2
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 3.9e-59 232.3 197 57.9
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 6.6e-59 231.5 200 56.5
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 6.6e-59 231.5 194 58.8
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 8.6e-59 231.1 197 57.9
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 8.6e-59 231.1 193 58.5
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.5e-58 230.3 198 58.6
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.9e-58 229.9 197 56.9
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.9e-58 229.9 198 60.1
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 2.5e-58 229.6 196 56.1
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.5e-58 229.6 198 56.6
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 4.3e-58 228.8 197 56.9
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 4.3e-58 228.8 197 56.9
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 4.3e-58 228.8 197 56.9
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 4.3e-58 228.8 197 56.9
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 5.6e-58 228.4 198 57.6
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 9.5e-58 227.6 197 57.4
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.2e-57 227.3 199 56.8
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.8e-57 226.1 198 57.6
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.8e-57 226.1 198 57.6
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 3.6e-57 225.7 184 60.3
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 6.1e-57 224.9 195 57.4
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 6.1e-57 224.9 195 56.4
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.0e-56 224.2 191 58.6
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.4e-56 223.8 198 57.1
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.4e-56 223.8 180 62.2
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 2.3e-56 223.0 198 55.1
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 2.3e-56 223.0 198 55.1
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 2.3e-56 223.0 190 58.4
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.1e-56 222.6 181 59.1
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 4.0e-56 222.2 182 61.0
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 5.2e-56 221.9 198 56.6
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 6.8e-56 221.5 196 57.1
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 6.8e-56 221.5 194 56.7
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.8e-56 221.5 194 56.7
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 8.9e-56 221.1 178 62.4
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.2e-55 220.7 182 60.4
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.0e-55 219.9 197 57.9
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.0e-55 219.9 191 58.1
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 2.0e-55 219.9 197 56.9
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.0e-55 219.9 205 54.1
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 4.4e-55 218.8 183 57.9
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.7e-54 216.9 194 55.2
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 3.7e-54 215.7 226 51.8
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 6.4e-54 214.9 182 58.2
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.1e-53 214.2 192 57.3
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.9e-53 213.4 196 54.6
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.4e-53 211.8 171 62.0
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 9.2e-53 211.1 173 59.0
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.7e-52 209.5 199 55.3
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.7e-52 209.5 210 53.3
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 3.5e-52 209.1 155 61.3
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.3e-51 207.2 194 56.2
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.3e-51 207.2 194 56.2
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.3e-51 207.2 226 51.3
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.7e-51 206.8 226 48.7
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 8.6e-51 204.5 155 66.5
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.5e-50 203.0 176 58.0
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 7.3e-50 201.4 199 54.3
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.2e-49 200.7 196 51.5
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 3.6e-49 199.1 203 54.2
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 4.7e-49 198.7 198 53.0
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 6.8e-48 194.9 141 67.4
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 8.9e-48 194.5 200 52.0
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.5e-47 193.7 182 53.8
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.0e-47 193.4 199 50.3
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 4.4e-47 192.2 144 64.6
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 5.8e-47 191.8 198 50.5
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 9.8e-47 191.0 182 53.3
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.9e-46 189.5 182 54.9
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.9e-45 186.8 177 53.1
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 7.0e-45 184.9 172 57.6
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 7.0e-45 184.9 199 49.2
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 8.6e-43 177.9 202 50.0
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 4.3e-42 175.6 182 50.5
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 9.5e-42 174.5 181 51.4
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.2e-41 174.1 162 54.3
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 4.7e-41 172.2 195 46.2
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.2e-39 167.5 203 46.8
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 2.6e-39 166.4 204 46.6
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.3e-38 164.1 201 48.3
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 8.3e-38 161.4 169 50.3
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 1.2e-36 157.5 171 48.5
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 6.0e-36 155.2 191 43.5
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 5.6e-34 148.7 146 48.6
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.8e-33 146.4 183 43.7
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.1e-32 142.9 180 42.8
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 4.0e-32 142.5 106 60.4
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.3e-30 137.5 157 46.5
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.4e-29 133.3 181 38.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 3.2e-29 132.9 159 42.8
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.0e-27 127.9 137 42.3
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.3e-27 126.7 108 56.5
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.1e-25 120.2 139 45.3
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.0e-24 115.9 126 52.4
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.9e-21 107.1 66 68.2
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 5.1e-19 99.0 65 66.2
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.1e-19 99.0 65 66.2
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 3.8e-14 82.8 137 32.8
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 3.5e-12 76.3 176 33.0
unitig_8.g3591 Utricularia gibba HOM05D004580 ORTHO05D005917 5.1e-11 72.4 65 56.9
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 7.4e-10 68.6 41 78.0
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.1e-08 64.7 142 28.9
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 4.0e-08 62.8 176 26.1
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.5e-07 60.8 33 81.8


User provided reference genes

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